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Fine stratification of microbial communities through a metagenomic profile of the photic zone

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/springerreference_3873openalex-snapshot

Sphingomonas and Related Genera

inferredcites →https://doi.org/10.1016/0003-2697(90)90598-4openalex-snapshot

Standard methods: For the examination of water and waste water

inferredcites →https://doi.org/10.1016/0043-1354(82)90249-4openalex-snapshot

Standard Methods for the Examination of Water and Wastewater

inferredcites →https://doi.org/10.1016/b978-0-12-065602-8.50009-1openalex-snapshot

Algal Polysaccharides

inferredcites →https://doi.org/10.1016/j.ecocom.2012.10.002openalex-snapshot

Spatio-temporal behaviour of the deep chlorophyll maximum in Mediterranean Sea: Development of a stochastic model for picophytoplankton dynamics

inferredcites →https://doi.org/10.1016/j.femsec.2004.04.002openalex-snapshot

Diversity of planktonic photoautotrophic microorganisms along a salinity gradient as depicted by microscopy, flow cytometry, pigment analysis and DNA-based methods

inferredcites →https://doi.org/10.1016/j.mib.2016.03.014openalex-snapshot

Flexible genomic islands as drivers of genome evolution

inferredcites →https://doi.org/10.1016/j.syapm.2008.12.001openalex-snapshot

Biogeography and phylogeny of the NOR5/OM60 clade of Gammaproteobacteria

inferredcites →https://doi.org/10.1016/j.syapm.2016.04.004openalex-snapshot

Revised phylogeny of Bacteroidetes and proposal of sixteen new taxa and two new combinations including Rhodothermaeota phyl. nov.

inferredcites →https://doi.org/10.1016/s0168-6496(01)00217-3openalex-snapshot

Molecular ecology of the marine cyanobacterial genera Prochlorococcus and Synechococcus

inferredcites →https://doi.org/10.1016/s0168-9525(00)02024-2openalex-snapshot

EMBOSS: The European Molecular Biology Open Software Suite

inferredcites →https://doi.org/10.1016/s0924-7963(02)00062-3openalex-snapshot

Primary production, carbon export and nutrients availability in western and eastern Mediterranean Sea in early summer 1996 (MINOS cruise)

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Iron cycling and nutrient-limitation patterns in surface waters of the World Ocean

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On the rheological models used for time‐domain methods of seismic wave propagation

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Seasonal variability of the mixed layer depth in the Mediterranean Sea as derived from in situ profiles

inferredcites →https://doi.org/10.1038/ismej.2007.10openalex-snapshot

Adaptation and spectral tuning in divergent marine proteorhodopsins from the eastern Mediterranean and the Sargasso Seas

inferredcites →https://doi.org/10.1038/ismej.2008.40openalex-snapshot

Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions

inferredcites →https://doi.org/10.1038/ismej.2009.135openalex-snapshot

Significant roles of bacteriochlorophylla supplemental to chlorophylla in the ocean

inferredcites →https://doi.org/10.1038/ismej.2010.189openalex-snapshot

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean

inferredcites →https://doi.org/10.1038/ismej.2010.44openalex-snapshot

Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing

inferredcites →https://doi.org/10.1038/ismej.2011.49openalex-snapshot

Transcriptome response of high- and low-light-adapted Prochlorococcus strains to changing iron availability

inferredcites →https://doi.org/10.1038/ismej.2012.169openalex-snapshot

Ecology of marine Bacteroidetes: a comparative genomics approach

inferredcites →https://doi.org/10.1038/ismej.2012.78openalex-snapshot

Isolation of an aerobic sulfur oxidizer from the SUP05/Arctic96BD-19 clade

inferredcites →https://doi.org/10.1038/ismej.2013.243openalex-snapshot

Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype

inferredcites →https://doi.org/10.1038/ismej.2014.153openalex-snapshot

Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years

inferredcites →https://doi.org/10.1038/ismej.2014.249openalex-snapshot

A new class of marine Euryarchaeota group II from the mediterranean deep chlorophyll maximum

inferredcites →https://doi.org/10.1038/ismej.2015.125openalex-snapshot

Seasonal time bombs: dominant temperate viruses affect Southern Ocean microbial dynamics

inferredcites →https://doi.org/10.1038/ismej.2015.175openalex-snapshot

Bacterial diversity and community composition from seasurface to subseafloor

inferredcites →https://doi.org/10.1038/ismej.2015.241openalex-snapshot

Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations

inferredcites →https://doi.org/10.1038/ismej.2015.92openalex-snapshot

Tritagonist as a new term for uncharacterised microorganisms in environmental systems

inferredcites →https://doi.org/10.1038/ismej.2016.188openalex-snapshot

New insights into marine group III Euryarchaeota, from dark to light

inferredcites →https://doi.org/10.1038/ismej.2016.84openalex-snapshot

Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum

inferredcites →https://doi.org/10.1038/msb4100087openalex-snapshot

Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability

inferredcites →https://doi.org/10.1038/nature08465openalex-snapshot

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

inferredcites →https://doi.org/10.1038/nature19068openalex-snapshot

SAR11 bacteria linked to ocean anoxia and nitrogen loss

inferredcites →https://doi.org/10.1038/nbt.2579openalex-snapshot

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

inferredcites →https://doi.org/10.1038/nmeth.3176openalex-snapshot

Fast and sensitive protein alignment using DIAMOND

inferredcites →https://doi.org/10.1038/nrmicro1893openalex-snapshot

Proteorhodopsins: an array of physiological roles?

inferredcites →https://doi.org/10.1038/nrmicro2235openalex-snapshot

Explaining microbial population genomics through phage predation

inferredcites →https://doi.org/10.1038/nrmicro3378openalex-snapshot

Prochlorococcus: the structure and function of collective diversity

inferredcites →https://doi.org/10.1038/srep02471openalex-snapshot

Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria

inferredcites →https://doi.org/10.1073/pnas.1216863110openalex-snapshot

Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters

inferredcites →https://doi.org/10.1073/pnas.1304246110openalex-snapshot

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

inferredcites →https://doi.org/10.1073/pnas.1416223112openalex-snapshot

Genomic and proteomic characterization of “ Candidatus Nitrosopelagicus brevis”: An ammonia-oxidizing archaeon from the open ocean

inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

inferredcites →https://doi.org/10.1093/bioinformatics/btp161openalex-snapshot

Identification of ribosomal RNA genes in metagenomic fragments

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot

Search and clustering orders of magnitude faster than BLAST

inferredcites →https://doi.org/10.1093/bioinformatics/bts174openalex-snapshot

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

inferredcites →https://doi.org/10.1093/database/bav080openalex-snapshot

MicRhoDE: a curated database for the analysis of microbial rhodopsin diversity and evolution

inferredcites →https://doi.org/10.1093/emboj/cdg183openalex-snapshot

Diversification and spectral tuning in marine proteorhodopsins

inferredcites →https://doi.org/10.1093/gbe/evs112openalex-snapshot

Polyclonality of Concurrent Natural Populations of Alteromonas macleodii

inferredcites →https://doi.org/10.1093/molbev/msv149openalex-snapshot

Selection Maintains Low Genomic GC Content in Marine SAR11 Lineages

inferredcites →https://doi.org/10.1093/molbev/msw054openalex-snapshot

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

inferredcites →https://doi.org/10.1093/nar/25.5.955openalex-snapshot

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

inferredcites →https://doi.org/10.1093/nar/29.1.22openalex-snapshot

The COG database: new developments in phylogenetic classification of proteins from complete genomes

inferredcites →https://doi.org/10.1093/nar/29.1.41openalex-snapshot

TIGRFAMs: a protein family resource for the functional identification of proteins

inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot

MUSCLE: multiple sequence alignment with high accuracy and high throughput

inferredcites →https://doi.org/10.1093/nar/gkt1244openalex-snapshot

Ribosomal Database Project: data and tools for high throughput rRNA analysis

inferredcites →https://doi.org/10.1099/ijs.0.64755-0openalex-snapshot

Coraliomargarita akajimensis gen. nov., sp. nov., a novel member of the phylum ‘Verrucomicrobia’ isolated from seawater in Japan

inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

inferredcites →https://doi.org/10.1111/1574-6941.12348openalex-snapshot

Genomic differentiation among two strains of the PS1 clade isolated from geographically separated marine habitats

inferredcites →https://doi.org/10.1111/1574-6941.12408openalex-snapshot

Molecular ecology of microbial mats

inferredcites →https://doi.org/10.1111/j.1462-2920.2007.01246.xopenalex-snapshot

Basin‐scale distribution patterns of picocyanobacterial lineages in the Atlantic Ocean

inferredcites →https://doi.org/10.1111/j.1574-6941.2007.00297.xopenalex-snapshot

High vertical and low horizontal diversity of Prochlorococcus ecotypes in the Mediterranean Sea in summer

inferredcites →https://doi.org/10.1111/j.1574-6968.2011.02457.xopenalex-snapshot

Differential photoinhibition of bacterial and archaeal ammonia oxidation

inferredcites →https://doi.org/10.1126/science.1120250openalex-snapshot

Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior

inferredcites →https://doi.org/10.1126/science.1175309openalex-snapshot

Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones

inferredcites →https://doi.org/10.1126/science.1198078openalex-snapshot

Seasonality in Ocean Microbial Communities

inferredcites →https://doi.org/10.1126/science.1203690openalex-snapshot

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

inferredcites →https://doi.org/10.1126/science.1212665openalex-snapshot

Untangling Genomes from Metagenomes: Revealing an Uncultured Class of Marine Euryarchaeota

inferredcites →https://doi.org/10.1126/science.1248575openalex-snapshot

Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus

inferredcites →https://doi.org/10.1126/science.1261359openalex-snapshot

Structure and function of the global ocean microbiome

inferredcites →https://doi.org/10.1126/science.281.5374.237openalex-snapshot

Primary Production of the Biosphere: Integrating Terrestrial and Oceanic Components

inferredcites →https://doi.org/10.1128/aem.00432-12openalex-snapshot

Ecophysiological Characterization of Ammonia-Oxidizing Archaea and Bacteria from Freshwater

inferredcites →https://doi.org/10.1128/aem.00473-09openalex-snapshot

Comparative Metagenomic Analysis of a Microbial Community Residing at a Depth of 4,000 Meters at Station ALOHA in the North Pacific Subtropical Gyre

inferredcites →https://doi.org/10.1128/aem.00899-14openalex-snapshot

Verrucomicrobia Are Candidates for Polysaccharide-Degrading Bacterioplankton in an Arctic Fjord of Svalbard

inferredcites →https://doi.org/10.1128/aem.03777-12openalex-snapshot

SUP05 Dominates the Gammaproteobacterial Sulfur Oxidizer Assemblages in Pelagic Redoxclines of the Central Baltic and Black Seas

inferredcites →https://doi.org/10.1128/aem.63.1.186-193.1997openalex-snapshot

Enumeration and Cell Cycle Analysis of Natural Populations of Marine Picoplankton by Flow Cytometry Using the Nucleic Acid Stain SYBR Green I

inferredcites →https://doi.org/10.1128/aem.70.1.432-440.2004openalex-snapshot

Cultivation and Growth Characteristics of a Diverse Group of Oligotrophic Marine Gammaproteobacteria

inferredcites →https://doi.org/10.1128/mbio.00252-12openalex-snapshot

Streamlining and Core Genome Conservation among Highly Divergent Members of the SAR11 Clade

inferredcites →https://doi.org/10.1128/mbio.02083-14openalex-snapshot

Genomes of PlanktonicAcidimicrobiales: Widening Horizons for MarineActinobacteriaby Metagenomics

inferredcites →https://doi.org/10.1128/mmbr.00003-16openalex-snapshot

Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology

inferredcites →https://doi.org/10.1186/1471-2105-11-119openalex-snapshot

Prodigal: prokaryotic gene recognition and translation initiation site identification

inferredcites →https://doi.org/10.1186/1471-2105-6-298openalex-snapshot

Kalign – an accurate and fast multiple sequence alignment algorithm

inferredcites →https://doi.org/10.1186/gb-2007-8-1-r10openalex-snapshot

Prediction of effective genome size in metagenomic samples

inferredcites →https://doi.org/10.1186/s13059-015-0611-7openalex-snapshot

Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome

inferredcites →https://doi.org/10.1186/s13059-015-0834-7openalex-snapshot

Metagenome-assembled genomes uncover a global brackish microbiome

inferredcites →https://doi.org/10.1371/journal.pbio.0050077openalex-snapshot

The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific

inferredcites →https://doi.org/10.1371/journal.pcbi.1004957openalex-snapshot

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

inferredcites →https://doi.org/10.1371/journal.pone.0078858openalex-snapshot

Comparative and Phylogenomic Evidence That the Alphaproteobacterium HIMB59 Is Not a Member of the Oceanic SAR11 Clade

inferredcites →https://doi.org/10.1371/journal.pone.0097338openalex-snapshot

Core Microbial Functional Activities in Ocean Environments Revealed by Global Metagenomic Profiling Analyses

inferredcites →https://doi.org/10.18637/jss.v025.i01openalex-snapshot

FactoMineR : An R Package for Multivariate Analysis

inferredcites →https://doi.org/10.18637/jss.v025.i14openalex-snapshot

GEEQBOX : A MATLAB Toolbox for Generalized Estimating Equations and Quasi-Least Squares

inferredcites →https://doi.org/10.23818/limn.32.13openalex-snapshot

Spectrophotometric methods for the determination of photosynthetic pigments in stratified lakes: a critical analysis based on comparisons with HPLC determinations in a model lake

inferredcites →https://doi.org/10.3389/fmicb.2012.00345openalex-snapshot

Genomic and Physiological Analysis of Carbon Storage in the Verrucomicrobial Methanotroph “Ca. Methylacidiphilum Fumariolicum” SolV

inferredcites →https://doi.org/10.3389/fmicb.2016.00996openalex-snapshot

Not All Particles Are Equal: The Selective Enrichment of Particle-Associated Bacteria from the Mediterranean Sea

inferredcites →https://doi.org/10.4056/sigs.952166openalex-snapshot

Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24T)

inferredcites →https://doi.org/10.4319/lo.2004.49.2.0508openalex-snapshot

Light driven seasonal patterns of chlorophyll and nitrate in the lower euphotic zone of the North Pacific Subtropical Gyre

inferredcites →https://doi.org/10.5194/bg-8-1839-2011openalex-snapshot

Microbial food webs and metabolic state across oligotrophic waters of the Mediterranean Sea during summer

inferredcites →https://doi.org/10.5194/bg-8-2785-2011openalex-snapshot

Is the distribution of Prochlorococcus and Synechococcus ecotypes in the Mediterranean Sea affected by global warming?

inferredcites →https://doi.org/10.7287/peerj.preprints.1900v1openalex-snapshot

The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes

inferredcites →https://doi.org/10.7936/k78050mpopenalex-snapshot

Structural RNA Homology Search and Alignment Using Covariance Models

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.micres.2018.08.015openalex-snapshot

Profiles of quorum sensing (QS)-related sequences in phycospheric microorganisms during a marine dinoflagellate bloom, as determined by a metagenomic approach

inferred← citeshttps://doi.org/10.1101/349548openalex-snapshot

Metabolic Diversity within the Globally Abundant Marine Group II Euryarchaea Offers Insight into Ecological Patterns

inferred← citeshttps://doi.org/10.1111/1462-2920.14268openalex-snapshot

Raman‐activated cell sorting and metagenomic sequencing revealing carbon‐fixing bacteria in the ocean

inferred← citeshttps://doi.org/10.1186/s12862-019-1365-8openalex-snapshot

Aerobic prokaryotes do not have higher GC contents than anaerobic prokaryotes, but obligate aerobic prokaryotes have

inferred← citeshttps://doi.org/10.1371/journal.pgen.1007018openalex-snapshot

Genome diversity of marine phages recovered from Mediterranean metagenomes: Size matters

inferred← citeshttps://doi.org/10.3390/genes9020100openalex-snapshot

High Prevalence of Quorum-Sensing and Quorum-Quenching Activity among Cultivable Bacteria and Metagenomic Sequences in the Mediterranean Sea

inferred← citeshttps://doi.org/10.70675/f3ff24d0z251cz4a0az8b0dz8f8c6ee0e15fopenalex-snapshot

La métagénomique pour étudier diversité et fonction des communautés microbiennes marines : un focus sur les Archaea du Marine Groupe II (MGII)

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