On the public citation graph

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

https://doi.org/10.1101/138685
0 signed · 43 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.cell.2009.04.020openalex-snapshot
A Unifying Model for the Selective Regulation of Inducible Transcription by CpG Islands and Nucleosome Remodeling
inferredcites →https://doi.org/10.1016/j.stem.2013.06.004openalex-snapshot
FGF Signaling Inhibition in ESCs Drives Rapid Genome-wide Demethylation to the Epigenetic Ground State of Pluripotency
inferredcites →https://doi.org/10.1038/7734openalex-snapshot
Tsix, a gene antisense to Xist at the X-inactivation centre
inferredcites →https://doi.org/10.1038/cr.2016.23openalex-snapshot
Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas
inferredcites →https://doi.org/10.1038/cr.2017.82openalex-snapshot
Single-cell multi-omics sequencing of mouse early embryos and embryonic stem cells
inferredcites →https://doi.org/10.1038/nature08514openalex-snapshot
Human DNA methylomes at base resolution show widespread epigenomic differences
inferredcites →https://doi.org/10.1038/nature10808openalex-snapshot
DNase I sensitivity QTLs are a major determinant of human expression variation
inferredcites →https://doi.org/10.1038/nature11232openalex-snapshot
The accessible chromatin landscape of the human genome
inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot
An integrated encyclopedia of DNA elements in the human genome
inferredcites →https://doi.org/10.1038/nature14590openalex-snapshot
Single-cell chromatin accessibility reveals principles of regulatory variation
inferredcites →https://doi.org/10.1038/nature15740openalex-snapshot
Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples
inferredcites →https://doi.org/10.1038/nmeth.2639openalex-snapshot
Smart-seq2 for sensitive full-length transcriptome profiling in single cells
inferredcites →https://doi.org/10.1038/nmeth.3035openalex-snapshot
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
inferredcites →https://doi.org/10.1038/nmeth.3370openalex-snapshot
G&T-seq: parallel sequencing of single-cell genomes and transcriptomes
inferredcites →https://doi.org/10.1038/nmeth.3728openalex-snapshot
Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity
inferredcites →https://doi.org/10.1038/nmeth.3971openalex-snapshot
Diffusion pseudotime robustly reconstructs lineage branching
inferredcites →https://doi.org/10.1038/nprot.2014.006openalex-snapshot
Full-length RNA-seq from single cells using Smart-seq2
inferredcites →https://doi.org/10.1038/nprot.2016.138openalex-snapshot
Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&T-seq
inferredcites →https://doi.org/10.1038/nprot.2016.187openalex-snapshot
Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing (scBS-seq)
inferredcites →https://doi.org/10.1073/pnas.0914005107openalex-snapshot
Independent filtering increases detection power for high-throughput experiments
inferredcites →https://doi.org/10.1093/bioinformatics/btr167openalex-snapshot
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btw432openalex-snapshot
Higher order methylation features for clustering and prediction in epigenomic studies
inferredcites →https://doi.org/10.1093/nar/gkv1157openalex-snapshot
Ensembl 2016
inferredcites →https://doi.org/10.1101/gr.143008.112openalex-snapshot
Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules
inferredcites →https://doi.org/10.1101/gr.147942.112openalex-snapshot
Dynamic DNA methylation across diverse human cell lines and tissues
inferredcites →https://doi.org/10.1186/s13059-015-0805-zopenalex-snapshot
ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis
inferredcites →https://doi.org/10.1186/s13059-016-0944-xopenalex-snapshot
Single-cell epigenomics: powerful new methods for understanding gene regulation and cell identity
inferredcites →https://doi.org/10.1186/s13059-016-0947-7openalex-snapshot
Pooling across cells to normalize single-cell RNA sequencing data with many zero counts
inferredcites →https://doi.org/10.1186/s13059-016-0950-zopenalex-snapshot
Simultaneous profiling of transcriptome and DNA methylome from a single cell
inferredcites →https://doi.org/10.1523/jneurosci.0473-10.2010openalex-snapshot
Protogenin Defines a Transition Stage during Embryonic Neurogenesis and Prevents Precocious Neuronal Differentiation
inferredcites →https://doi.org/10.7554/elife.23203openalex-snapshot
Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.coisb.2018.01.003openalex-snapshot
Statistical single cell multi-omics integration
inferred← citeshttps://doi.org/10.1016/j.mam.2017.08.006openalex-snapshot
Single cell analysis of normal and leukemic hematopoiesis
inferred← citeshttps://doi.org/10.1016/j.mam.2017.09.002openalex-snapshot
Single cell epigenome sequencing technologies
inferred← citeshttps://doi.org/10.1038/s41467-017-02762-zopenalex-snapshot
Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo
inferred← citeshttps://doi.org/10.1093/bfgp/elx046openalex-snapshot
Mapping gene regulatory networks from single-cell omics data
inferred← citeshttps://doi.org/10.1093/nar/gkad566openalex-snapshot
Integration of gene expression and DNA methylation data across different experiments
inferred← citeshttps://doi.org/10.1098/rsif.2017.0387openalex-snapshot
Opportunities and obstacles for deep learning in biology and medicine
inferred← citeshttps://doi.org/10.1101/199547openalex-snapshot
Deciphering programs of transcriptional regulation by combined deconvolution of multiple omics layers
inferred← citeshttps://doi.org/10.1126/science.aan6826openalex-snapshot
Single-cell epigenomics: Recording the past and predicting the future
inferred← citeshttps://doi.org/10.4018/979-8-3373-4849-0.ch001openalex-snapshot
Spatial and Single-Cell Multi-Omics for Precision Medicine
inferred← citeshttps://doi.org/10.70675/69543fb0zccf0z4c4dzbd34z6aa4482b1101openalex-snapshot
Structure learning to unravel mechanisms of the immune system
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.