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High-Definition Electronic Genome Maps from Single Molecule Data

https://doi.org/10.1101/139840
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/0968-4328(93)90056-7openalex-snapshot
Electron microscopy of RecA-DNA complexes: Two different states, their functional significance and relation to the solved crystal structure
inferredcites →https://doi.org/10.1016/j.bpj.2011.05.034openalex-snapshot
Origins and Consequences of Velocity Fluctuations during DNA Passage through a Nanopore
inferredcites →https://doi.org/10.1016/s0006-3495(99)77153-5openalex-snapshot
Microsecond Time-Scale Discrimination Among Polycytidylic Acid, Polyadenylic Acid, and Polyuridylic Acid as Homopolymers or as Segments Within Single RNA Molecules
inferredcites →https://doi.org/10.1021/acs.nanolett.6b01661openalex-snapshot
Measurement of DNA Translocation Dynamics in a Solid-State Nanopore at 100 ns Temporal Resolution
inferredcites →https://doi.org/10.1021/ar000138mopenalex-snapshot
Characterization of Nucleic Acids by Nanopore Analysis
inferredcites →https://doi.org/10.1021/nl504375copenalex-snapshot
Velocity of DNA during Translocation through a Solid-State Nanopore
inferredcites →https://doi.org/10.1021/nl803189kopenalex-snapshot
Translocation of RecA-Coated Double-Stranded DNA through Solid-State Nanopores
inferredcites →https://doi.org/10.1021/nl9027318openalex-snapshot
Electrophoretic Force on a Protein-Coated DNA Molecule in a Solid-State Nanopore
inferredcites →https://doi.org/10.1021/nl903631mopenalex-snapshot
Detection of Local Protein Structures along DNA Using Solid-State Nanopores
inferredcites →https://doi.org/10.1038/90216openalex-snapshot
Nanopores with a spark for single-molecule detection
inferredcites →https://doi.org/10.1038/nbt.1495openalex-snapshot
The potential and challenges of nanopore sequencing
inferredcites →https://doi.org/10.1038/nbt.2478openalex-snapshot
Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)
inferredcites →https://doi.org/10.1038/nbt.3423openalex-snapshot
Three decades of nanopore sequencing
inferredcites →https://doi.org/10.1038/nmat965openalex-snapshot
DNA molecules and configurations in a solid-state nanopore microscope
inferredcites →https://doi.org/10.1038/nmeth.3454openalex-snapshot
Assembly and diploid architecture of an individual human genome via single-molecule technologies
inferredcites →https://doi.org/10.1038/nnano.2011.129openalex-snapshot
Nanopore sensors for nucleic acid analysis
inferredcites →https://doi.org/10.1038/nrg3933openalex-snapshot
Genetic variation and the de novo assembly of human genomes
inferredcites →https://doi.org/10.1063/1.3264632openalex-snapshot
Origin of translocation barriers for polyelectrolyte chains
inferredcites →https://doi.org/10.1063/1.4938732openalex-snapshot
Measurements of DNA barcode label separations in nanochannels from time-series data
inferredcites →https://doi.org/10.1073/pnas.1001831107openalex-snapshot
Nanopore DNA sequencing with MspA
inferredcites →https://doi.org/10.1073/pnas.1608271113openalex-snapshot
Design and characterization of a nanopore-coupled polymerase for single-molecule DNA sequencing by synthesis on an electrode array
inferredcites →https://doi.org/10.1073/pnas.1613365113openalex-snapshot
Deep sequencing of 10,000 human genomes
inferredcites →https://doi.org/10.1073/pnas.93.24.13770openalex-snapshot
Characterization of individual polynucleotide molecules using a membrane channel
inferredcites →https://doi.org/10.1073/pnas.96.18.10109openalex-snapshot
Polymerization and mechanical properties of single RecA–DNA filaments
inferredcites →https://doi.org/10.1089/cmb.2006.13.442openalex-snapshot
Alignment of Optical Maps
inferredcites →https://doi.org/10.1093/jb/mvm033openalex-snapshot
Visualization of RecA Filaments and DNA by Fluorescence Microscopy
inferredcites →https://doi.org/10.1098/rsif.2011.0222openalex-snapshot
Controlling molecular transport through nanopores
inferredcites →https://doi.org/10.1103/physrevlett.86.3435openalex-snapshot
Voltage-Driven DNA Translocations through a Nanopore
inferredcites →https://doi.org/10.1111/pbi.12513openalex-snapshot
BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes
inferredcites →https://doi.org/10.1126/science.8211127openalex-snapshot
A New Five-Year Plan for the U.S. Human Genome Project
inferredcites →https://doi.org/10.1186/1471-2164-8-321openalex-snapshot
Optical mapping as a routine tool for bacterial genome sequence finishing
inferredcites →https://doi.org/10.1186/2047-217x-3-34openalex-snapshot
Rapid detection of structural variation in a human genome using nanochannel-based genome mapping technology
inferredcites →https://doi.org/10.1371/journal.pone.0055864openalex-snapshot
Rapid Genome Mapping in Nanochannel Arrays for Highly Complete and Accurate De Novo Sequence Assembly of the Complex Aegilops tauschii Genome
inferredcites →https://doi.org/10.1534/genetics.115.183483openalex-snapshot
Genome-Wide Structural Variation Detection by Genome Mapping on Nanochannel Arrays
inferredcites →https://doi.org/10.48550/arxiv.1607.04612openalex-snapshot
Direct measurements reveal non-Markovian fluctuations of DNA threading through a solid-state nanopore

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/b978-0-323-90148-2.00003-1openalex-snapshot
Advances in sequencing technology, databases, and analyses tools for the assessment of microbial diversity
inferred← citeshttps://doi.org/10.1016/j.csbj.2020.07.018openalex-snapshot
Advances in optical mapping for genomic research
inferred← citeshttps://doi.org/10.1016/j.micres.2020.126665openalex-snapshot
Characterization of Lysinibacillus fusiformis strain S4C11: In vitro, in planta, and in silico analyses reveal a plant-beneficial microbe
inferred← citeshttps://doi.org/10.1038/s41557-023-01322-xopenalex-snapshot
Nanopore DNA sequencing technologies and their applications towards single-molecule proteomics
inferred← citeshttps://doi.org/10.1038/s41576-020-0236-xopenalex-snapshot
Long-read human genome sequencing and its applications
inferred← citeshttps://doi.org/10.1101/140699openalex-snapshot
Automated Structural Variant Verification in Human Genomes using Single-Molecule Electronic DNA Mapping
inferred← citeshttps://doi.org/10.1105/tpc.17.00514openalex-snapshot
Is It Ordered Correctly? Validating Genome Assemblies by Optical Mapping
inferred← citeshttps://doi.org/10.33612/diss.570000248openalex-snapshot
Smaller, denser, smarter: improved Strand-seq library preparation, inversion genotyping, and phasing
inferred← citeshttps://doi.org/10.3390/plants12020320openalex-snapshot
Structural Refinement by Direct Mapping Reveals Assembly Inconsistencies near Hi-C Junctions
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