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Pleistocene climate change and the formation of regional species pools

https://doi.org/10.1101/149617
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Very high resolution interpolated climate surfaces for global land areas
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Origins of Biogeography
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Rapid thermal adaptation during field temperature variations in Drosophila melanogaster
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The Iberian Peninsula – corridor or cul-de-sac? Mammalian faunal change and possible routes of dispersal in the last 2 million years
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Phylogeographic insights into cryptic glacial refugia
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Hypothesis testing in biogeography
inferredcites →https://doi.org/10.1016/j.tree.2014.08.003openalex-snapshot
Mistaking geography for biology: inferring processes from species distributions
inferredcites →https://doi.org/10.1016/j.tree.2015.02.008openalex-snapshot
Ecological and evolutionary perspectives on community assembly
inferredcites →https://doi.org/10.1016/j.ympev.2012.06.015openalex-snapshot
Molecular systematics and evolutionary history of the genus Carabus (Col. Carabidae)
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Phylogenetic comparative methods and the geography of speciation
inferredcites →https://doi.org/10.1038/nature03288openalex-snapshot
Functional cartography of complex metabolic networks
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Deciphering the evolution of birdwing butterflies 150 years after Alfred Russel Wallace
inferredcites →https://doi.org/10.1038/srep18793openalex-snapshot
Macroevolution of hyperdiverse flightless beetles reflects the complex geological history of the Sunda Arc
inferredcites →https://doi.org/10.1038/srep32233openalex-snapshot
Complementarity effects on tree growth are contingent on tree size and climatic conditions across Europe
inferredcites →https://doi.org/10.1073/pnas.0901650106openalex-snapshot
Hutchinson's duality: The once and future niche
inferredcites →https://doi.org/10.1073/pnas.1018642108openalex-snapshot
Applying a regional community concept to forest birds of eastern North America
inferredcites →https://doi.org/10.1073/pnas.1523683113openalex-snapshot
Region effects influence local tree species diversity
inferredcites →https://doi.org/10.1073/pnas.1608381113openalex-snapshot
Geography and major host evolutionary transitions shape the resource use of plant parasites
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Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis
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Disintegration of the Ecological Community
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Phylogenetic Signal in Module Composition and Species Connectivity in Compartmentalized Host-Parasite Networks
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Available Climate Regimes Drive Niche Diversification during Range Expansion
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Fast unfolding of communities in large networks
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APE: Analyses of Phylogenetics and Evolution in R language
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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btq166openalex-snapshot
Picante: R tools for integrating phylogenies and ecology
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/nar/22.22.4673openalex-snapshot
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkl191openalex-snapshot
Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment
inferredcites →https://doi.org/10.1093/sysbio/syu056openalex-snapshot
Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades
inferredcites →https://doi.org/10.1098/rspb.1998.0492openalex-snapshot
Speciation durations and Pleistocene effects on vertebrate phylogeography
inferredcites →https://doi.org/10.1098/rstb.2011.0021openalex-snapshot
Phylogenetic structure of mammal assemblages at large geographical scales: linking phylogenetic community ecology with macroecology
inferredcites →https://doi.org/10.1101/038695openalex-snapshot
An Extended Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction and Cladogenesis
inferredcites →https://doi.org/10.1103/physreve.76.066102openalex-snapshot
Modularity and community detection in bipartite networks
inferredcites →https://doi.org/10.1111/ele.12431openalex-snapshot
Intrinsic dynamics of the regional community
inferredcites →https://doi.org/10.1111/gcb.13196openalex-snapshot
Ecological change predicts population dynamics and genetic diversity over 120 000 years
inferredcites →https://doi.org/10.1111/geb.12114openalex-snapshot
Climatic niche at physiological and macroecological scales: the thermal tolerance–geographical range interface and niche dimensionality
inferredcites →https://doi.org/10.1111/j.0014-3820.2004.tb00445.xopenalex-snapshot
NEW MITOCHONDRIAL DNA DATA AFFIRM THE IMPORTANCE OF PLEISTOCENE SPECIATION IN NORTH AMERICAN BIRDS
inferredcites →https://doi.org/10.1111/j.1095-8312.1999.tb01160.xopenalex-snapshot
Post-glacial re-colonization of European biota
inferredcites →https://doi.org/10.1111/j.1096-0031.1998.tb00328.xopenalex-snapshot
Total Evidence Or Taxonomic Congruence: Cladistics Or Consensus Classification
inferredcites →https://doi.org/10.1111/j.1365-2699.2012.02684.xopenalex-snapshot
Integrating biogeographical processes and local community assembly
inferredcites →https://doi.org/10.1111/j.1365-2699.2012.02793.xopenalex-snapshot
Glacial survival and post‐glacial recolonization of an arctic–alpine freshwater insect (Arcynopteryx dichroa, Plecoptera, Perlodidae) in Europe
inferredcites →https://doi.org/10.1111/j.1365-2907.2006.00093.xopenalex-snapshot
Glacial refugia of mammals in Europe: evidence from fossil records
inferredcites →https://doi.org/10.1111/j.1365-294x.2006.03031.xopenalex-snapshot
Phylogeography and Pleistocene refugia of the adder (Vipera berus) as inferred from mitochondrial DNA sequence data
inferredcites →https://doi.org/10.1111/j.1461-0248.2007.01038.xopenalex-snapshot
Could the tree diversity pattern in Europe be generated by postglacial dispersal limitation?
inferredcites →https://doi.org/10.1111/j.1461-0248.2011.01634.xopenalex-snapshot
Ice age climate, evolutionary constraints and diversity patterns of European dung beetles
inferredcites →https://doi.org/10.1111/j.1466-8238.2011.00698.xopenalex-snapshot
Measuring ecological niche overlap from occurrence and spatial environmental data
inferredcites →https://doi.org/10.1111/j.1472-4642.2007.00341.xopenalex-snapshot
Using generalized dissimilarity modelling to analyse and predict patterns of beta diversity in regional biodiversity assessment
inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb00264.xopenalex-snapshot
GENETICS, SPECIATION AND THE FOUNDER PRINCIPLE
inferredcites →https://doi.org/10.1111/j.1600-0587.2009.06428.xopenalex-snapshot
Understanding (insect) species distributions across spatial scales
inferredcites →https://doi.org/10.1111/j.1600-0587.2013.00095.xopenalex-snapshot
Species richness of epiphytic bryophytes: drivers across scales on the edge of the Mediterranean
inferredcites →https://doi.org/10.1111/j.2006.0030-1299.14782.xopenalex-snapshot
Ecosystem consequences of the regional species pool
inferredcites →https://doi.org/10.1111/j.2007.0906-7590.05318.xopenalex-snapshot
Quaternary climate changes explain diversity among reptiles and amphibians
inferredcites →https://doi.org/10.1111/jbi.12214openalex-snapshot
Identifying global zoogeographical regions: lessons from W allace
inferredcites →https://doi.org/10.1111/jbi.12592openalex-snapshot
Breaking out of biogeographical modules: range expansion and taxon cycles in the hyperdiverse ant genus Pheidole
inferredcites →https://doi.org/10.1111/jbi.12741openalex-snapshot
Historical biogeography of Polyura butterflies in the oriental Palaeotropics: trans‐archipelagic routes and South Pacific island hopping
inferredcites →https://doi.org/10.1111/jbi.12747openalex-snapshot
Integrating systematics and biogeography to disentangle the roles of history and ecology in biotic assembly
inferredcites →https://doi.org/10.1111/jbi.12811openalex-snapshot
Glaciations, deciduous forests, water availability and current geographical patterns in the diversity of European Carabus species
inferredcites →https://doi.org/10.1111/jbi.13173openalex-snapshot
Conceptual and statistical problems with the DEC +J model of founder‐event speciation and its comparison with DEC via model selection
inferredcites →https://doi.org/10.1111/jbi.13349openalex-snapshot
Phylogeography, evolutionary history and effects of glaciations in a species ( Zootoca vivipara ) inhabiting multiple biogeographic regions
inferredcites →https://doi.org/10.1111/rssc.12068openalex-snapshot
Generalized Additive Models for Large Data Sets
inferredcites →https://doi.org/10.1126/science.1067814openalex-snapshot
Dynamics of Pleistocene Population Extinctions in Beringian Brown Bears
inferredcites →https://doi.org/10.1126/science.1184819openalex-snapshot
Community Structure in Time-Dependent, Multiscale, and Multiplex Networks
inferredcites →https://doi.org/10.1126/science.1228282openalex-snapshot
An Update of Wallace’s Zoogeographic Regions of the World
inferredcites →https://doi.org/10.1146/annurev-ecolsys-112414-054314openalex-snapshot
The Influence of Paleoclimate on Present-Day Patterns in Biodiversity and Ecosystems
inferredcites →https://doi.org/10.1186/1471-2105-6-1openalex-snapshot
A novel method for prokaryotic promoter prediction based on DNA stability
inferredcites →https://doi.org/10.1186/1471-2148-12-40openalex-snapshot
Winding up the molecular clock in the genus Carabus (Coleoptera: Carabidae): assessment of methodological decisions on rate and node age estimation
inferredcites →https://doi.org/10.1371/journal.pone.0061185openalex-snapshot
Multiple Glacial Refugia of the Low-Dispersal Ground Beetle Carabus irregularis: Molecular Data Support Predictions of Species Distribution Models
inferredcites →https://doi.org/10.18637/jss.v067.i01openalex-snapshot
Fitting Linear Mixed-Effects Models Using lme4
inferredcites →https://doi.org/10.2307/1935376openalex-snapshot
Nonsynchronous Spatial Overlap of Lizards in Patchy Habitats
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.4322/natcon.2012.029openalex-snapshot
Basic questions in biogeography and the (lack of) simplicity of species distributions: Putting species distribution models in the right place
inferredcites →https://doi.org/10.5962/bhl.title.46581openalex-snapshot
Geographical distribution of animals : with a study of the relations of living and extinct faunas as elucidating the past changes of the earth's surface

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ecy.3870openalex-snapshot
Warming reverses directionality in the richness–abundance relationship in ephemeral Mediterranean plant communities
inferred← citeshttps://doi.org/10.1038/s41467-022-29267-8openalex-snapshot
Congruent evolutionary responses of European steppe biota to late Quaternary climate change
inferred← citeshttps://doi.org/10.1038/s41559-024-02484-8openalex-snapshot
Generalism in species interactions is more the consequence than the cause of ecological success
inferred← citeshttps://doi.org/10.1111/ele.13321openalex-snapshot
Human activity is altering the world’s zoogeographical regions
inferred← citeshttps://doi.org/10.21425/f5fbg44158openalex-snapshot
A tale of two niches: methods, concepts, and evolution
inferred← citeshttps://doi.org/10.24072/pci.evolbiol.100053openalex-snapshot
Recent assembly of European biogeographic species pool
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