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Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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SMURF: Genomic mapping of fungal secondary metabolite clusters
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Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus
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A high-performance computing toolset for relatedness and principal component analysis of SNP data
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QUAST: quality assessment tool for genome assemblies
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The MaSuRCA genome assembler
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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Genome sequence ofAspergillus luchuensisNBRC 4314
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
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Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
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inferredcites →https://doi.org/10.1105/tpc.8.5.887openalex-snapshot
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inferredcites →https://doi.org/10.1111/1462-2920.13007openalex-snapshot
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inferredcites →https://doi.org/10.1111/j.1365-2958.2009.06927.xopenalex-snapshot
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inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02696.xopenalex-snapshot
Production of novel fusarielins by ectopic activation of the polyketide synthase 9 cluster in Fusarium graminearum
inferredcites →https://doi.org/10.1111/mmi.12362openalex-snapshot
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inferredcites →https://doi.org/10.1128/aem.70.11.6518-6524.2004openalex-snapshot
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inferredcites →https://doi.org/10.1128/aem.70.3.1253-1262.2004openalex-snapshot
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inferredcites →https://doi.org/10.1128/ec.05224-11openalex-snapshot
Genome Sequence of the White Koji Mold Aspergillus kawachii IFO 4308, Used for Brewing the Japanese Distilled Spirit Shochu
inferredcites →https://doi.org/10.1128/genomea.00112-14openalex-snapshot
Draft Genome Sequence of Colletotrichum acutatum Sensu Lato ( Colletotrichum fioriniae )
inferredcites →https://doi.org/10.1128/genomea.00363-16openalex-snapshot
Genome Sequence of Penicillium solitum RS1, Which Causes Postharvest Apple Decay
inferredcites →https://doi.org/10.1128/genomea.01045-13openalex-snapshot
Draft Genome Sequences of Human Pathogenic Fungus Geomyces pannorum Sensu Lato and Bat White Nose Syndrome Pathogen Geomyces ( Pseudogymnoascus ) destructans
inferredcites →https://doi.org/10.1128/iai.00192-11openalex-snapshot
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inferredcites →https://doi.org/10.1128/mbio.00036-12openalex-snapshot
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A NEW GENERATION OF HOMOLOGY SEARCH TOOLS BASED ON PROBABILISTIC INFERENCE
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FUNCTIONS OF SECONDARY METABOLITES
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inferredcites →https://doi.org/10.1186/1471-2148-7-111openalex-snapshot
Gene duplication, modularity and adaptation in the evolution of the aflatoxin gene cluster
inferredcites →https://doi.org/10.1186/1471-2148-7-174openalex-snapshot
Origin and distribution of epipolythiodioxopiperazine (ETP) gene clusters in filamentous ascomycetes
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Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae
inferredcites →https://doi.org/10.1186/gb-2008-9-1-r18openalex-snapshot
Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi
inferredcites →https://doi.org/10.1186/s12864-015-1756-1openalex-snapshot
The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum
inferredcites →https://doi.org/10.1371/journal.pgen.1000046openalex-snapshot
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inferredcites →https://doi.org/10.1371/journal.pgen.1002353openalex-snapshot
Multiple Means to the Same End: The Genetic Basis of Acquired Stress Resistance in Yeast
inferredcites →https://doi.org/10.1371/journal.pgen.1005096openalex-snapshot
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inferredcites →https://doi.org/10.1371/journal.pone.0031218openalex-snapshot
The Functions of Myosin II and Myosin V Homologs in Tip Growth and Septation in Aspergillus nidulans
inferredcites →https://doi.org/10.1371/journal.pone.0041903openalex-snapshot
Two Different Secondary Metabolism Gene Clusters Occupied the Same Ancestral Locus in Fungal Dermatophytes of the Arthrodermataceae
inferredcites →https://doi.org/10.1371/journal.ppat.1003475openalex-snapshot
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Resequencing and Comparative Genomics of Stagonospora nodorum: Sectional Gene Absence and Effector Discovery
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In Silico Whole Genome Sequencer and Analyzer (iWGS): a Computational Pipeline to Guide the Design and Analysis of de novo Genome Sequencing Studies
inferredcites →https://doi.org/10.3389/fmicb.2015.00161openalex-snapshot
Fungal metabolic gene clusters—caravans traveling across genomes and environments
inferredcites →https://doi.org/10.4061/2011/423821openalex-snapshot
Evolutionary Origins of the Fumonisin Secondary Metabolite Gene Cluster inFusarium verticillioidesandAspergillus niger
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A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Freshwater fungal biology
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