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Ecophysiology of freshwater Verrucomicrobia inferred from metagenome-assembled genomes

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/prot.21018openalex-snapshot

Prediction of protein subcellular localization

inferredcites →https://doi.org/10.1007/0-387-30747-8_37openalex-snapshot

The Phylum Verrucomicrobia: A Phylogenetically Heterogeneous Bacterial Group

inferredcites →https://doi.org/10.1007/bf00138541openalex-snapshot

Production, isolation and preliminary characterization of the exopolysaccharide of the cyanobacterium Spirulina platensis

inferredcites →https://doi.org/10.1007/s00248-004-0244-yopenalex-snapshot

Annual Patterns in Bacterioplankton Community Variability in a Humic Lake

inferredcites →https://doi.org/10.1007/s00248-005-0049-7openalex-snapshot

Effect of Nutrient Loading on Bacterioplankton Community Composition in Lake Mesocosms

inferredcites →https://doi.org/10.1007/s00248-010-9722-6openalex-snapshot

Temporal Patterns in Glycolate-Utilizing Bacterial Community Composition Correlate with Phytoplankton Population Dynamics in Humic Lakes

inferredcites →https://doi.org/10.1016/j.femsle.2004.06.007openalex-snapshot

Novel protein domains and motifs in the marine planctomycete Rhodopirellula baltica

inferredcites →https://doi.org/10.1016/j.mimet.2010.08.003openalex-snapshot

Real-time PCR detection of Holophagae (Acidobacteria) and Verrucomicrobia subdivision 1 groups in bulk and leek (Allium porrum) rhizosphere soils

inferredcites →https://doi.org/10.1016/j.syapm.2009.12.005openalex-snapshot

Development of a 16S rRNA-targeted probe set for Verrucomicrobia and its application for fluorescence in situ hybridization in a humic lake

inferredcites →https://doi.org/10.1016/s0168-6496(97)00092-5openalex-snapshot

Divergent members of the bacterial division Verrucomicrobiales in a temperate freshwater lake

inferredcites →https://doi.org/10.1016/s0723-2020(87)80010-3openalex-snapshot

Verrucomicrobium spinosum gen. nov., sp. nov.: a Fimbriated Prosthecate Bacterium

inferredcites →https://doi.org/10.1023/a:1000348616863openalex-snapshot

Verrucomicrobia div. nov., a new division of the Bacteria containing three new species of Prosthecobacter

inferredcites →https://doi.org/10.1038/382445a0openalex-snapshot

Humic substances as electron acceptors for microbial respiration

inferredcites →https://doi.org/10.1038/ismej.2007.6openalex-snapshot

Synchrony in aquatic microbial community dynamics

inferredcites →https://doi.org/10.1038/ismej.2012.3openalex-snapshot

Global distribution and diversity of marine Verrucomicrobia

inferredcites →https://doi.org/10.1038/ismej.2016.84openalex-snapshot

Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum

inferredcites →https://doi.org/10.1038/nature06222openalex-snapshot

Methanotrophy below pH 1 by a new Verrucomicrobia species

inferredcites →https://doi.org/10.1038/ngeo2084openalex-snapshot

Humic substances as fully regenerable electron acceptors in recurrently anoxic environments

inferredcites →https://doi.org/10.1038/nmicrobiol.2016.198openalex-snapshot

Genome reduction in an abundant and ubiquitous soil bacterium ‘Candidatus Udaeobacter copiosus’

inferredcites →https://doi.org/10.1038/s41396-017-0001-0openalex-snapshot

Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations

inferredcites →https://doi.org/10.1093/bioinformatics/btq249openalex-snapshot

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

inferredcites →https://doi.org/10.1093/gbe/evs113openalex-snapshot

Analysis of Genome Content Evolution in PVC Bacterial Super-Phylum: Assessment of Candidate Genes Associated with Cellular Organization and Lifestyle

inferredcites →https://doi.org/10.1093/nar/gkh417openalex-snapshot

PRED-TMBB: a web server for predicting the topology of -barrel outer membrane proteins

inferredcites →https://doi.org/10.1093/nar/gks479openalex-snapshot

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

inferredcites →https://doi.org/10.1093/nar/gkt963openalex-snapshot

IMG 4 version of the integrated microbial genomes comparative analysis system

inferredcites →https://doi.org/10.1093/plankt/fbh010openalex-snapshot

Response of a member of the Verrucomicrobia, among the dominating bacteria in a hypolimnion, to increased phosphorus availability

inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

inferredcites →https://doi.org/10.1099/00207713-46-4-960openalex-snapshot

Phylogeny of Prosthecobacter, the Fusiform Caulobacters: Members of a Recently Discovered Division of the Bacteria

inferredcites →https://doi.org/10.1099/00207713-51-6-1965openalex-snapshot

Opitutus terrae gen. nov., sp. nov., to accommodate novel strains of the division 'Verrucomicrobia' isolated from rice paddy soil.

inferredcites →https://doi.org/10.1099/ijs.0.02873-0openalex-snapshot

Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium

inferredcites →https://doi.org/10.1099/ijs.0.041848-0openalex-snapshot

Roseimicrobium gellanilyticum gen. nov., sp. nov., a new member of the class Verrucomicrobiae

inferredcites →https://doi.org/10.1099/ijs.0.048793-0openalex-snapshot

Brevifollis gellanilyticus gen. nov., sp. nov., a gellan-gum-degrading bacterium of the phylum Verrucomicrobia

inferredcites →https://doi.org/10.1099/ijs.0.060244-0openalex-snapshot

Terrimicrobium sacchariphilum gen. nov., sp. nov., an anaerobic bacterium of the class ‘Spartobacteria’ in the phylum Verrucomicrobia, isolated from a rice paddy field

inferredcites →https://doi.org/10.1099/ijs.0.2008/000711-0openalex-snapshot

Haloferula rosea gen. nov., sp. nov., Haloferula harenae sp. nov., Haloferula phyci sp. nov., Haloferula helveola sp. nov. and Haloferula sargassicola sp. nov., five marine representatives of the family Verrucomicrobiaceae within the phylum 'Verrucomicrobia'

inferredcites →https://doi.org/10.1099/ijs.0.64360-0openalex-snapshot

Rubritalea marina gen. nov., sp. nov., a marine representative of the phylum ‘Verrucomicrobia’, isolated from a sponge (Porifera)

inferredcites →https://doi.org/10.1099/ijs.0.64755-0openalex-snapshot

Coraliomargarita akajimensis gen. nov., sp. nov., a novel member of the phylum ‘Verrucomicrobia’ isolated from seawater in Japan

inferredcites →https://doi.org/10.1099/mic.0.058404-0openalex-snapshot

Outer-membrane cytochrome-independent reduction of extracellular electron acceptors in Shewanella oneidensis

inferredcites →https://doi.org/10.1101/106856openalex-snapshot

Metabolic Network Analysis and Metatranscriptomics Reveals Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage aci

inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

inferredcites →https://doi.org/10.1111/1758-2229.12204openalex-snapshot

A trans‐outer membrane porin‐cytochrome protein complex for extracellular electron transfer by G eobacter sulfurreducens PCA

inferredcites →https://doi.org/10.1111/j.1462-2920.2004.00657.xopenalex-snapshot

Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes

inferredcites →https://doi.org/10.1111/j.1462-2920.2007.01527.xopenalex-snapshot

The influence of habitat heterogeneity on freshwater bacterial community composition and dynamics

inferredcites →https://doi.org/10.1111/j.1574-6941.2012.01469.xopenalex-snapshot

Temporal dynamics and phylogenetic diversity of free-living and particle-associatedVerrucomicrobiacommunities in relation to environmental variables in a mesotrophic lake

inferredcites →https://doi.org/10.1128/aem.00899-14openalex-snapshot

Verrucomicrobia Are Candidates for Polysaccharide-Degrading Bacterioplankton in an Arctic Fjord of Svalbard

inferredcites →https://doi.org/10.1128/aem.02250-09openalex-snapshot

Role ofGeobacter sulfurreducensOuter Surfacec-Type Cytochromes in Reduction of Soil Humic Acid and Anthraquinone-2,6-Disulfonate

inferredcites →https://doi.org/10.1128/aem.03887-13openalex-snapshot

Characterization of a Planctomycetal Organelle: a Novel Bacterial Microcompartment for the Aerobic Degradation of Plant Saccharides

inferredcites →https://doi.org/10.1128/aem.06466-11openalex-snapshot

Genomic and Physiological Characterization of the Verrucomicrobia Isolate Diplosphaera colitermitum gen. nov., sp. nov., Reveals Microaerophily and Nitrogen Fixation Genes

inferredcites →https://doi.org/10.1128/aem.65.9.4252-4254.1999openalex-snapshot

Role of Humic-Bound Iron as an Electron Transfer Agent in Dissimilatory Fe(III) Reduction

inferredcites →https://doi.org/10.1128/aem.69.10.5875-5883.2003openalex-snapshot

Rapid Screening for Freshwater Bacterial Groups by Using Reverse Line Blot Hybridization

inferredcites →https://doi.org/10.1128/aem.70.10.5875-5881.2004openalex-snapshot

Chthoniobacter flavus gen. nov., sp. nov., the First Pure-Culture Representative of Subdivision Two, Spartobacteria classis nov., of the Phylum Verrucomicrobia

inferredcites →https://doi.org/10.1128/aem.71.12.8201-8206.2005openalex-snapshot

Distribution of Typical Freshwater Bacterial Groups Is Associated with pH, Temperature, and Lake Water Retention Time

inferredcites →https://doi.org/10.1128/aem.71.12.8402-8410.2005openalex-snapshot

Detection and Cultivation of Soil Verrucomicrobia

inferredcites →https://doi.org/10.1128/aem.71.12.8634-8641.2005openalex-snapshot

Outer Membranec-Type Cytochromes Required for Fe(III) and Mn(IV) Oxide Reduction inGeobacter sulfurreducens

inferredcites →https://doi.org/10.1128/jb.184.6.1806-1810.2002openalex-snapshot

Protective Role of tolC in Efflux of the Electron Shuttle Anthraquinone-2,6-Disulfonate

inferredcites →https://doi.org/10.1128/mmbr.00028-10openalex-snapshot

A Guide to the Natural History of Freshwater Lake Bacteria

inferredcites →https://doi.org/10.1128/msphere.00296-17openalex-snapshot

Erratum for Linz et al., “Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes”

inferredcites →https://doi.org/10.1139/cjm-44-7-637openalex-snapshot

Alterococcus agarolyticus, gen.nov., sp.nov., a halophilic thermophilic bacterium capable of agar degradation

inferredcites →https://doi.org/10.1186/1471-2105-5-113openalex-snapshot

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

inferredcites →https://doi.org/10.1371/journal.pone.0000224openalex-snapshot

Plant Carbohydrate Scavenging through TonB-Dependent Receptors: A Feature Shared by Phytopathogenic and Aquatic Bacteria

inferredcites →https://doi.org/10.1371/journal.pone.0035314openalex-snapshot

Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia

inferredcites →https://doi.org/10.1371/journal.pone.0056103openalex-snapshot

The Role of Nitrogen Fixation in Cyanobacterial Bloom Toxicity in a Temperate, Eutrophic Lake

inferredcites →https://doi.org/10.3354/ame036201openalex-snapshot

Diversity of cyanobacteria and heterotrophic bacteria in cyanobacterial blooms in Lake Joutikas, Finland

inferredcites →https://doi.org/10.3389/fmicb.2014.00657openalex-snapshot

Genomic analyses of bacterial porin-cytochrome gene clusters

inferredcites →https://doi.org/10.3390/ijms13010961openalex-snapshot

Freshwater Plants Synthesize Sulfated Polysaccharides: Heterogalactans from Water Hyacinth (Eicchornia crassipes)

inferredcites →https://doi.org/10.3390/md9020196openalex-snapshot

Chemical Structures and Bioactivities of Sulfated Polysaccharides from Marine Algae

inferredcites →https://doi.org/10.4319/lo.2013.58.3.0921openalex-snapshot

Physical responses of small temperate lakes to variation in dissolved organic carbon concentrations

inferredcites →https://doi.org/10.7717/peerj.1165openalex-snapshot

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

inferredcites →https://doi.org/10.7717/peerj.243openalex-snapshot

PhyloSift: phylogenetic analysis of genomes and metagenomes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/lno.11346openalex-snapshot

Stratification of microbiomes during the holomictic period of Lake Fuxian, an alpine monomictic lake

inferred← citeshttps://doi.org/10.1007/s11356-022-24517-0openalex-snapshot

Contribution of pollution gradient to the sediment microbiome and potential pathogens in urban streams draining into Lake Victoria (Kenya)

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