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The evolutionary history of Nebraska deer mice: local adaptation in the face of strong gene flow

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline
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The genetics of pigmentation: from fancy genes to complex traits
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Not just black and white: Pigment pattern development and evolution in vertebrates
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Gene flow and the limits to natural selection
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The genetic variability of polygenic characters under optimizing selection, mutation and drift
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Changes of gene-frequency in Cepaea nemoralis (L); the estimation of selective values
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The genomic basis of adaptive evolution in threespine sticklebacks
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Differences in dorsal and ventral pigmentation result from regional expression of the mouse agouti gene.
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Joint Influence of Gene Flow and Selection on a Reproductively Important Genetic Polymorphism in the Fire Ant Solenopsis invicta
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PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
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Rapid and Accurate Haplotype Phasing and Missing-Data Inference for Whole-Genome Association Studies By Use of Localized Haplotype Clustering
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Genome-Wide Association Mapping of Phenotypic Traits Subject to a Range of Intensities of Natural Selection inTimema cristinae
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The Sequence Alignment/Map format and SAMtools
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Improving SNP discovery by base alignment quality
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The variant call format and VCFtools
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A high-performance computing toolset for relatedness and principal component analysis of SNP data
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S weep F inder 2: increased sensitivity, robustness and flexibility
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Genetic Differentiation and Estimation of Gene Flow from F -Statistics Under Isolation by Distance
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The Evolution of Recombination in a Heterogeneous Environment
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Recent Progress in Polymorphism-Based Population Genetic Inference
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On the Origin of Flightlessness in Ephemeroptera
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Convergence in pigmentation at multiple levels: mutations, genes and function
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Molecular analysis of reverse mutations from nonagouti (a) to black-and-tan (a(t)) and white-bellied agouti (Aw) reveals alternative forms of agouti transcripts.
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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
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Genomic scans for selective sweeps using SNP data
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Measuring Natural Selection on Genotypes and Phenotypes in the Wild
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A new look at the statistical model identification
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TESS3: fast inference of spatial population structure and genome scans for selection
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LEA: An R package for landscape and ecological association studies
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GENOME DIVERGENCE AND THE GENETIC ARCHITECTURE OF BARRIERS TO GENE FLOW BETWEENLYCAEIDES IDASANDL. MELISSA
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A migration-selection model for the morph frequency variation in the peppered moth over England and Wales
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ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE
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THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE
inferredcites →https://doi.org/10.1111/j.1558-5646.2011.01277.xopenalex-snapshot
ESTABLISHMENT AND MAINTENANCE OF ADAPTIVE GENETIC DIVERGENCE UNDER MIGRATION, SELECTION, AND DRIFT
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Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
inferredcites →https://doi.org/10.1111/jeb.13124openalex-snapshot
Neutral processes forming large clones during colonization of new areas
inferredcites →https://doi.org/10.1111/mec.12352openalex-snapshot
Uncovering the genetic basis of adaptive change: on the intersection of landscape genomics and theoretical population genetics
inferredcites →https://doi.org/10.1111/mec.13493openalex-snapshot
The past, present and future of genomic scans for selection
inferredcites →https://doi.org/10.1111/mec.13606openalex-snapshot
Genomics of local adaptation with gene flow
inferredcites →https://doi.org/10.1111/mec.13663openalex-snapshot
The role of isoforms in the evolution of cryptic coloration in Peromyscus mice
inferredcites →https://doi.org/10.1111/mec.13743openalex-snapshot
Genomic variation at the tips of the adaptive radiation of Darwin's finches
inferredcites →https://doi.org/10.1111/mec.13972openalex-snapshot
History, geography and host use shape genomewide patterns of genetic variation in the redheaded pine sawfly (Neodiprion lecontei)
inferredcites →https://doi.org/10.1126/science.1175826openalex-snapshot
On the Origin and Spread of an Adaptive Allele in Deer Mice
inferredcites →https://doi.org/10.1126/science.1200684openalex-snapshot
The Developmental Role of Agouti in Color Pattern Evolution
inferredcites →https://doi.org/10.1126/science.1233213openalex-snapshot
Adaptive Evolution of Multiple Traits Through Multiple Mutations at a Single Gene
inferredcites →https://doi.org/10.1146/annurev.ge.28.120194.001201openalex-snapshot
MOLECULAR AND DEVELOPMENTAL GENETICS OF MOUSE COAT COLOR
inferredcites →https://doi.org/10.1371/journal.pgen.1002967openalex-snapshot
Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1003264openalex-snapshot
Polygenic Modeling with Bayesian Sparse Linear Mixed Models
inferredcites →https://doi.org/10.1371/journal.pgen.1003905openalex-snapshot
Robust Demographic Inference from Genomic and SNP Data
inferredcites →https://doi.org/10.1371/journal.pgen.1005414openalex-snapshot
Correction: Genomics of Divergence along a Continuum of Parapatric Population Differentiation
inferredcites →https://doi.org/10.1371/journal.pone.0006435openalex-snapshot
Melanism in Peromyscus Is Caused by Independent Mutations in Agouti
inferredcites →https://doi.org/10.1371/journal.pone.0110579openalex-snapshot
On the Prospect of Identifying Adaptive Loci in Recently Bottlenecked Populations
inferredcites →https://doi.org/10.1534/genetics.105.047985openalex-snapshot
Chromosome Inversions, Local Adaptation and Speciation
inferredcites →https://doi.org/10.1534/genetics.112.147231openalex-snapshot
Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations
inferredcites →https://doi.org/10.1534/genetics.113.160572openalex-snapshot
Fast and Efficient Estimation of Individual Ancestry Coefficients
inferredcites →https://doi.org/10.1534/genetics.114.163477openalex-snapshot
The Effect of Linkage on Establishment and Survival of Locally Beneficial Mutations
inferredcites →https://doi.org/10.1554/03-418openalex-snapshot
ECOLOGICAL GENETICS OF ADAPTIVE COLOR POLYMORPHISM IN POCKET MICE: GEOGRAPHIC VARIATION IN SELECTED AND NEUTRAL GENES
inferredcites →https://doi.org/10.2307/2413122openalex-snapshot
Multiple Regression and Correlation Extensions of the Mantel Test of Matrix Correspondence
inferredcites →https://doi.org/10.3389/fgene.2013.00235openalex-snapshot
The impact of equilibrium assumptions on tests of selection

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41559-018-0742-9openalex-snapshot
Rapid niche expansion by selection on functional genomic variation after ecosystem recovery
inferred← citeshttps://doi.org/10.1038/s42003-022-03088-3openalex-snapshot
Local adaptation to climate anomalies relates to species phylogeny
inferred← citeshttps://doi.org/10.1038/s42003-023-04494-xopenalex-snapshot
Life on a beach leads to phenotypic divergence despite gene flow for an island lizard
inferred← citeshttps://doi.org/10.1093/molbev/msy154openalex-snapshot
Integrative Population and Physiological Genomics Reveals Mechanisms of Adaptation in Killifish
inferred← citeshttps://doi.org/10.1093/oso/9780198862291.003.0009openalex-snapshot
Complex Traits in Natural Populations
inferred← citeshttps://doi.org/10.1098/rstb.2021.0009openalex-snapshot
The response of a metapopulation to a changing environment
inferred← citeshttps://doi.org/10.1101/249755openalex-snapshot
Shallow evolutionary divergence between two Andean hummingbirds: Speciation with gene flow?
inferred← citeshttps://doi.org/10.1101/383240openalex-snapshot
The fitness consequences of genetic variation in wild populations of mice
inferred← citeshttps://doi.org/10.1111/brv.12952openalex-snapshot
Analysis of the genetic loci of pigment pattern evolution in vertebrates
inferred← citeshttps://doi.org/10.1111/mec.17138openalex-snapshot
Rapid evolution of novel biotic interactions in the UK Brown Argus butterfly uses genomic variation from across its geographical range
inferred← citeshttps://doi.org/10.1111/mec.17163openalex-snapshot
An evolutionarily distinct ringed seal in the Ilulissat Icefjord
inferred← citeshttps://doi.org/10.1111/mec.17594openalex-snapshot
Genomic Architecture Underlying the Striking Colour Variation in the Presence of Gene Flow for the Guinan Toad‐Headed Lizard
inferred← citeshttps://doi.org/10.22541/au.165164226.69412407/v1openalex-snapshot
Life on a beach for island lizards: phenotypic divergence in the face of gene flow
inferred← citeshttps://doi.org/10.31274/etd-20210609-83openalex-snapshot
Selection and population demography shape evolution of two long-lived ectotherms
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