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Signatures of the evolution of parthenogenesis and cryptobiosis in panagrolaimid nematodes
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Sex ratio and unisexual sterility in hybrid animals
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Comparative and experimental embryogenesis of Plectidae (Nematoda)
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Developmental variations among Panagrolaimid nematodes indicate developmental system drift within a small taxonomic unit
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A comparative genomic analysis of the small heat shock proteins in Caenorhabditis elegans and briggsae
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Expression of heat shock protein-coding genes associated with anhydrobiosis in an African chironomid Polypedilum vanderplanki
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DNA photolyases: Physical properties, action mechanism, and roles in dark repair
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Induction of Hsp70 by desiccation, ionising radiation and heat-shock in the eutardigrade Richtersius coronifer
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BLOC-1 Brings Together the Actin and Microtubule Cytoskeletons to Generate Recycling Endosomes
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Tissue specific response to DNA damage: C. elegans as role model
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Insect diapause-specific peptide from the leaf beetle has consensus with a putative iridovirus peptide
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Roles of a membrane-bound caleosin and putative peroxygenase in biotic and abiotic stress responses in Arabidopsis
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Homoeologs: What Are They and How Do We Infer Them?
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Structure and function of a virally encoded fungal toxin from Ustilago maydis: a fungal and mammalian Ca2+ channel inhibitor
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A molecular evolutionary framework for the phylum Nematoda
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Sister chromosome pairing maintains heterozygosity in parthenogenetic lizards
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“Disentangling nestedness” disentangled
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Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein
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Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge
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Systematic evaluation of spliced alignment programs for RNA-seq data
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Intrinsically disordered proteins as molecular shields
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Mechanism of action of a flavin-containing monooxygenase
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Sequence and genetic map of Meloidogyne hapla : A compact nematode genome for plant parasitism
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The gene regulatory program of Acrobeloides nanus reveals conservation of phylum-specific expression
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Identification of Anhydrobiosis-related Genes from an Expressed Sequence Tag Database in the Cryptobiotic Midge Polypedilum vanderplanki (Diptera; Chironomidae)
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The FAR Protein Family of the Nematode Caenorhabditis elegans
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NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees
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Gene prediction with a hidden Markov model and a new intron submodel
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CRANN: detecting adaptive evolution in protein-coding DNA sequences
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The Sequence Alignment/Map format and SAMtools
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Fast and SNP-tolerant detection of complex variants and splicing in short reads
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Mugsy: fast multiple alignment of closely related whole genomes
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BamTools: a C++ API and toolkit for analyzing and managing BAM files
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InterProScan 5: genome-scale protein function classification
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Figmop: a profile HMM to identify genes and bypass troublesome gene models in draft genomes
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OrthoInspector 2.0: Software and database updates
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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
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THE EVOLUTIONARY ADVANTAGE OF RECOMBINATION
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Divergence Times in Caenorhabditis and Drosophila Inferred from Direct Estimates of the Neutral Mutation Rate
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Evolution of Mutation Rates: Phylogenomic Analysis of the Photolyase/Cryptochrome Family
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FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program: Table 1.
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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Ab initio gene identification in metagenomic sequences
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Redundans: an assembly pipeline for highly heterozygous genomes
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Real-time PCR-based method for the estimation of genome sizes
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The Mutational Meltdown in Asexual Populations
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Abscisic Acid-Induced Secretory Proteins in Suspension-Cultured Cells of Winter Wheat
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Gene-Tree Reconciliation with MUL-Trees to Resolve Polyploidy Events
inferredcites →https://doi.org/10.1094/mpmi-03-11-0055openalex-snapshot
Horizontal Gene Transfer in Nematodes: A Catalyst for Plant Parasitism?
inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
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VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
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The Reductase Activity of the Arabidopsis Caleosin RESPONSIVE TO DESSICATION20 Mediates Gibberellin-Dependent Flowering Time, Abscisic Acid Sensitivity, and Tolerance to Oxidative Stress
inferredcites →https://doi.org/10.1105/tpc.112.108340openalex-snapshot
A DEAD Box RNA Helicase Is Critical for Pre-mRNA Splicing, Cold-Responsive Gene Regulation, and Cold Tolerance in Arabidopsis
inferredcites →https://doi.org/10.1111/j.1420-9101.2004.00745.xopenalex-snapshot
Recombination and loss of complementation: a more than two-fold cost for parthenogenesis
inferredcites →https://doi.org/10.1111/jeb.12326openalex-snapshot
Gateway to genetic exchange? DNA double‐strand breaks in the bdelloid rotifer A dineta vaga submitted to desiccation
inferredcites →https://doi.org/10.1111/jeb.12337openalex-snapshot
Parasitic success without sex – the nematode experience
inferredcites →https://doi.org/10.1126/science.1144363openalex-snapshot
Functional Divergence of Former Alleles in an Ancient Asexual Invertebrate
inferredcites →https://doi.org/10.1126/science.1156407openalex-snapshot
Massive Horizontal Gene Transfer in Bdelloid Rotifers
inferredcites →https://doi.org/10.1126/science.278.5338.631openalex-snapshot
A Genomic Perspective on Protein Families
inferredcites →https://doi.org/10.1126/science.288.5469.1211openalex-snapshot
Evidence for the Evolution of Bdelloid Rotifers Without Sexual Reproduction or Genetic Exchange
inferredcites →https://doi.org/10.1146/annurev.genet.35.102401.085719openalex-snapshot
Genetics and the Fitness of Hybrids
inferredcites →https://doi.org/10.1163/156854199507938openalex-snapshot
Generation times of some free-living nematodes cultured at three temperatures
inferredcites →https://doi.org/10.1186/1471-2105-12-323openalex-snapshot
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
inferredcites →https://doi.org/10.1186/1471-2105-6-31openalex-snapshot
Automated generation of heuristics for biological sequence comparison
inferredcites →https://doi.org/10.1186/1471-2148-8-194openalex-snapshot
Genetic tests of ancient asexuality in Root Knot Nematodes reveal recent hybrid origins
inferredcites →https://doi.org/10.1186/1471-2148-9-15openalex-snapshot
Molecular evolution in Panagrolaimus nematodes: origins of parthenogenesis, hermaphroditism and the Antarctic species P. davidi
inferredcites →https://doi.org/10.1186/1471-2164-15-239openalex-snapshot
Characterization of the caleosin gene family in the Triticeae
inferredcites →https://doi.org/10.1186/1471-2164-7-229openalex-snapshot
AgBase: a functional genomics resource for agriculture
inferredcites →https://doi.org/10.1186/1471-2199-11-6openalex-snapshot
Expression profiling and cross-species RNA interference (RNAi) of desiccation-induced transcripts in the anhydrobiotic nematode Aphelenchus avenae
inferredcites →https://doi.org/10.1186/1756-0500-5-68openalex-snapshot
A molecular analysis of desiccation tolerance mechanisms in the anhydrobiotic nematode Panagrolaimus superbus using expressed sequenced tags
inferredcites →https://doi.org/10.1186/gb-2013-14-6-r66openalex-snapshot
Separating homeologs by phasing in the tetraploid wheat transcriptome
inferredcites →https://doi.org/10.1186/s12864-017-3860-xopenalex-snapshot
Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction
inferredcites →https://doi.org/10.1186/s13059-015-0721-2openalex-snapshot
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
inferredcites →https://doi.org/10.1186/s13227-017-0074-xopenalex-snapshot
Evolutionary loss of melanogenesis in the tunicate Molgula occulta
inferredcites →https://doi.org/10.1242/jeb.01629openalex-snapshot
The anhydrobiotic potential and molecular phylogenetics of species and strains ofPanagrolaimus(Nematoda, Panagrolaimidae)
inferredcites →https://doi.org/10.1371/journal.pbio.2002266openalex-snapshot
Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus
inferredcites →https://doi.org/10.1371/journal.pgen.1006777openalex-snapshot
Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes
inferredcites →https://doi.org/10.1371/journal.pone.0104526openalex-snapshot
Molecular Analysis of the Cold Tolerant Antarctic Nematode, Panagrolaimus davidi
inferredcites →https://doi.org/10.1371/journal.pone.0116084openalex-snapshot
Anhydrobiosis and Freezing-Tolerance: Adaptations That Facilitate the Establishment of Panagrolaimus Nematodes in Polar Habitats
inferredcites →https://doi.org/10.1534/g3.117.300233openalex-snapshot
KinFin: Software for Taxon-Aware Analysis of Clustered Protein Sequences
inferredcites →https://doi.org/10.1534/genetics.112.148809openalex-snapshot
The Draft Genome and Transcriptome of Panagrellus redivivus Are Shaped by the Harsh Demands of a Free-Living Lifestyle
inferredcites →https://doi.org/10.1534/genetics.115.176719openalex-snapshot
Allele Sharing and Evidence for Sexuality in a Mitochondrial Clade of Bdelloid Rotifers
inferredcites →https://doi.org/10.3389/fgene.2013.00237openalex-snapshot
Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots
inferredcites →https://doi.org/10.3390/genes8100248openalex-snapshot
Alienness: Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
inferredcites →https://doi.org/10.7717/peerj.356openalex-snapshot
The complex hybrid origins of the root knot nematodes revealed through comparative genomics
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1093/gbe/evx269openalex-snapshot
A Genome Resequencing-Based Genetic Map Reveals the Recombination Landscape of an Outbred Parasitic Nematode in the Presence of Polyploidy and Polyandry
inferred← citeshttps://doi.org/10.1186/s12864-018-5334-1openalex-snapshot
Evolutionary, structural and functional analysis of the caleosin/peroxygenase gene family in the Fungi
inferred← citeshttps://doi.org/10.1186/s13227-017-0081-yopenalex-snapshot
Differences in the genetic control of early egg development and reproduction between C. elegans and its parthenogenetic relative D. coronatus
inferred← citeshttps://doi.org/10.1371/journal.pbio.2004830openalex-snapshot
Comparative genomics of bdelloid rotifers: Insights from desiccating and nondesiccating species
inferred← citeshttps://doi.org/10.3390/genes8100248openalex-snapshot
Alienness: Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
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