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RNA Transcriptome Mapping with GraphMap

https://doi.org/10.1101/160085
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-61779-089-8_4openalex-snapshot
Transcriptome Profiling Using Single-Molecule Direct RNA Sequencing
inferredcites →https://doi.org/10.1016/j.bdq.2015.02.001openalex-snapshot
Assessing the performance of the Oxford Nanopore Technologies MinION
inferredcites →https://doi.org/10.1038/ncomms11307openalex-snapshot
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
inferredcites →https://doi.org/10.1038/nmeth.1613openalex-snapshot
Computational methods for transcriptome annotation and quantification using RNA-seq
inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot
HISAT: a fast spliced aligner with low memory requirements
inferredcites →https://doi.org/10.1038/nmeth.4577openalex-snapshot
Highly parallel direct RNA sequencing on an array of nanopores
inferredcites →https://doi.org/10.1093/bioinformatics/bti310openalex-snapshot
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
inferredcites →https://doi.org/10.1093/bioinformatics/btq057openalex-snapshot
Fast and SNP-tolerant detection of complex variants and splicing in short reads
inferredcites →https://doi.org/10.1093/bioinformatics/btr247openalex-snapshot
Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling
inferredcites →https://doi.org/10.1093/bioinformatics/btr427openalex-snapshot
Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/bts649openalex-snapshot
PBSIM: PacBio reads simulator—toward accurate genome assembly
inferredcites →https://doi.org/10.1093/bioinformatics/btw152openalex-snapshot
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
inferredcites →https://doi.org/10.1093/bioinformatics/btw237openalex-snapshot
Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads
inferredcites →https://doi.org/10.1093/nar/gkq622openalex-snapshot
MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery
inferredcites →https://doi.org/10.1093/nar/gku1341openalex-snapshot
Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
inferredcites →https://doi.org/10.1101/048603openalex-snapshot
Third-generation sequencing and the future of genomics
inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
inferredcites →https://doi.org/10.1186/gb-2013-14-6-405openalex-snapshot
The advantages of SMRT sequencing
inferredcites →https://doi.org/10.1186/gb-2013-14-7-405openalex-snapshot
The advantages of SMRT sequencing
inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

What points at this work

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inferred← citeshttps://doi.org/10.3389/fgene.2020.00606openalex-snapshot
Methodologies for Transcript Profiling Using Long-Read Technologies
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