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Ecological selection of siderophore-producing microbial taxa in response to heavy metal contamination

https://doi.org/10.1101/163774
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Ecologically meaningful transformations for ordination of species data
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Universal chemical assay for the detection and determination of siderophores
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The Ecology and Evolution of Microbial Competition
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Immunological genomics of Brugia malayi: filarial genes implicated in immune evasion and protective immunity
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The diversity and biogeography of soil bacterial communities
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Editorial board
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Siderophore cooperation of the bacterium Pseudomonas fluorescens in soil
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Cooperation, virulence and siderophore production in bacterial parasites
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Viscous medium promotes cooperation in the pathogenic bacteriumPseudomonas aeruginosa
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Social evolution of toxic metal bioremediation in Pseudomonas aeruginosa
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Jensen-Shannon divergence and Hilbert space embedding
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A new method for non‐parametric multivariate analysis of variance
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inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02480.xopenalex-snapshot
The bacterial biogeography of British soils
inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02556.xopenalex-snapshot
New roles for bacterial siderophores in metal transport and tolerance
inferredcites →https://doi.org/10.1111/j.1574-6941.2007.00388.xopenalex-snapshot
Siderophore-mediated cooperation and virulence in Pseudomonas aeruginosa
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Presence of the siderophores pyoverdine and pyochelin in the extracellular medium reduces toxic metal accumulation in Pseudomonas aeruginosa and increases bacterial metal tolerance
inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00171.xopenalex-snapshot
Cascade multivariate regression tree: a novel approach for modelling nested explanatory sets
inferredcites →https://doi.org/10.1126/science.1112665openalex-snapshot
Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil
inferredcites →https://doi.org/10.1126/science.7466396openalex-snapshot
The Evolution of Cooperation
inferredcites →https://doi.org/10.1128/aem.00342-13openalex-snapshot
Distribution-Based Clustering: Using Ecology To Refine the Operational Taxonomic Unit
inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
inferredcites →https://doi.org/10.1128/aem.03520-14openalex-snapshot
Pseudomonas fluorescens Pirates both Ferrioxamine and Ferricoelichelin Siderophores from Streptomyces ambofaciens
inferredcites →https://doi.org/10.1128/aem.07878-11openalex-snapshot
Simple Absolute Quantification Method Correcting for Quantitative PCR Efficiency Variations for Microbial Community Samples
inferredcites →https://doi.org/10.1128/jb.00837-06openalex-snapshot
Survival and Growth in the Presence of Elevated Copper: Transcriptional Profiling of Copper-Stressed Pseudomonas aeruginosa
inferredcites →https://doi.org/10.1128/mbio.00036-12openalex-snapshot
The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss
inferredcites →https://doi.org/10.1146/annurev-genet-111212-133307openalex-snapshot
The Genotypic View of Social Interactions in Microbial Communities
inferredcites →https://doi.org/10.1146/annurev.ecolsys.38.091206.095740openalex-snapshot
The Social Lives of Microbes
inferredcites →https://doi.org/10.1146/annurev.mi.48.100194.003523openalex-snapshot
MICROBIAL IRON TRANSPORT
inferredcites →https://doi.org/10.1146/annurev.micro.54.1.881openalex-snapshot
Iron Metabolism in Pathogenic Bacteria
inferredcites →https://doi.org/10.1201/9781420005271openalex-snapshot
Soil Sampling and Methods of Analysis
inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
inferredcites →https://doi.org/10.1371/journal.ppat.1005792openalex-snapshot
Rampant Cheating by Pathogens?
inferredcites →https://doi.org/10.1385/mb:12:2:149openalex-snapshot
Heavy Metals Bioremediation of Soil
inferredcites →https://doi.org/10.15252/embr.201541064openalex-snapshot
The sociality of bioremediation
inferredcites →https://doi.org/10.18637/jss.v067.i01openalex-snapshot
Fitting Linear Mixed-Effects Models Using lme4
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MULTIVARIATE REGRESSION TREES: A NEW TECHNIQUE FOR MODELING SPECIES–ENVIRONMENT RELATIONSHIPS
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breakaway: Species Richness Estimation and Modeling
inferredcites →https://doi.org/10.3389/fcimb.2014.00003openalex-snapshot
Pathogenic adaptations to host-derived antibacterial copper

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41579-023-00980-5openalex-snapshot
The interplay between microbial communities and soil properties
inferred← citeshttps://doi.org/10.1099/mgen.0.000196openalex-snapshot
Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations
inferred← citeshttps://doi.org/10.1186/s40643-022-00548-wopenalex-snapshot
Genome and transcriptome analysis of rock-dissolving Pseudomonas sp. NLX-4 strain
inferred← citeshttps://doi.org/10.12692/ijb/15.2.439-444openalex-snapshot
Hyperaccumulation of silver in Indian mustard Brassica juncea
inferred← citeshttps://doi.org/10.12692/ijb/15.3.42-47openalex-snapshot
Hyperaccumulation of silver in Indian mustard Brassica juncea
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Hyperaccumulation of silver in Indian mustard Brassica juncea
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EFFECTS OF PYOCYANIN PIGMENT ON THE CHEMICAL AND PHYSICAL CHARACTERISTICS OF AGRICULTURAL SOILS
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1091120/v1openalex-snapshot
Genome and Transcriptome Sequencing of Novel Pseudomonas sp. NLX-4 Strain Involved in Bio-Restoration of Over Exploited Mining Sites
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1836682/v1openalex-snapshot
Copper selects for siderophore-mediated virulence in Pseudomonas aeruginosa
inferred← citeshttps://doi.org/10.22541/au.158981452.24541562openalex-snapshot
Thermodynamic analysis of an ecologically restored plant community：Process and diversity
inferred← citeshttps://doi.org/10.22541/au.168690270.01555938/v1openalex-snapshot
Heavy metal pollution: Toxic effects on bacterial cells
inferred← citeshttps://doi.org/10.6084/m9.figshare.19959613openalex-snapshot
Additional file 1 of Genome and transcriptome analysis of rock-dissolving Pseudomonas sp. NLX-4 strain
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