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Resilience of small intestinal beneficial bacteria to the toxicity of soybean oil fatty acids

https://doi.org/10.1101/164715
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline
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Intestinal Lipid Metabolism
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Effect of Mutation of Potassium-Efflux System, KefA, on Mechanosensitive Channels in the Cytoplasmic Membrane of Escherichia coli
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Lingual and gastric lipases: species differences in the origin of prepancreatic digestive lipases and in the localization of gastric lipase
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The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes
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Diet-Induced Obesity Is Linked to Marked but Reversible Alterations in the Mouse Distal Gut Microbiome
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Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota
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Diet-Microbiome Interactions in Health Are Controlled by Intestinal Nitrogen Source Constraints
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The small intestine microbiota, nutritional modulation and relevance for health
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Fatty acid synthesis is a target for antibacterial activity of unsaturated fatty acids
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Linoleic acid kinetics and conversion to arachidonic acid in the pregnant and fetal baboon
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Anaerobic degradation and inhibitory effects of linoleic acid
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The influence of polyunsaturated fatty acids on probiotic growth and adhesion
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Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution
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Structure and functions of exopolysaccharide produced by gut commensal Lactobacillus reuteri 100-23
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Structural resilience of the gut microbiota in adult mice under high-fat dietary perturbations
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Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
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A human gut microbial gene catalogue established by metagenomic sequencing
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Diet rapidly and reproducibly alters the human gut microbiome
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Diet-induced extinctions in the gut microbiota compound over generations
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Integrative genomics viewer
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A framework for variation discovery and genotyping using next-generation DNA sequencing data
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SignalP 4.0: discriminating signal peptides from transmembrane regions
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QIIME allows analysis of high-throughput community sequencing data
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RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
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The effect of unsaturated fatty acids on Lactobacillus helveticus and other Gram-positive micro-organisms
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Production of conjugated linoleic acid by dairy starter cultures
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Analysis of the kefA2 mutation suggests that KefA is a cation‐specific channel involved in osmotic adaptation in Escherichia coli
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Effects of free fatty acids on propionic acid bacteria
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Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
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Host-microbial symbiosis in the vertebrate gastrointestinal tract and the Lactobacillus reuteri paradigm
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Polyunsaturated fatty acid saturation by gut lactic acid bacteria affecting host lipid composition
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Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products
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Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
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Fast and accurate short read alignment with Burrows–Wheeler transform
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ABACAS: algorithm-based automatic contiguation of assembled sequences
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ExSPAnder: a universal repeat resolver for DNA fragment assembly
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High efficiency recombineering in lactic acid bacteria
inferredcites →https://doi.org/10.1093/nar/gkt1226openalex-snapshot
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
inferredcites →https://doi.org/10.1093/nar/gku366openalex-snapshot
PredictProtein—an open resource for online prediction of protein structural and functional features
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Mechanism of the Inhibitory Action of Linoleic Acid on the Growth of Staphylococcus aureus
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
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Physicochemical Effects of Long Chain Fatty Acids on Bacterial Cells and their Protoplasts
inferredcites →https://doi.org/10.1111/j.1365-2672.1973.tb04151.xopenalex-snapshot
Effect of Long Chain Fatty Acids on Bacterial Respiration and Amino Acid Uptake
inferredcites →https://doi.org/10.1111/j.1365-2672.1985.tb03319.xopenalex-snapshot
Effect of unsaturated fatty acids in growth inhibition of some penicillin‐resistant and sensitive bacteria
inferredcites →https://doi.org/10.1111/j.1365-2672.1993.tb03031.xopenalex-snapshot
Numerical taxonomy of Lactobacillus spp. associated with healthy and diseased mucosa of the human intestines
inferredcites →https://doi.org/10.1111/j.1365-2958.2009.06829.xopenalex-snapshot
Two‐enzyme systems for glycolipid and polyglycerolphosphate lipoteichoic acid synthesis in Listeria monocytogenes
inferredcites →https://doi.org/10.1111/j.1462-2920.2007.01292.xopenalex-snapshot
d ‐Alanyl ester depletion of teichoic acids in Lactobacillus reuteri 100‐23 results in impaired colonization of the mouse gastrointestinal tract
inferredcites →https://doi.org/10.1111/j.1574-6941.2008.00454.xopenalex-snapshot
Predominance of a bacteriocin-producing Lactobacillus salivarius component of a five-strain probiotic in the porcine ileum and effects on host immune phenotype
inferredcites →https://doi.org/10.1111/j.1574-6976.2007.00099.xopenalex-snapshot
Bacterial peptidoglycan (murein) hydrolases
inferredcites →https://doi.org/10.1111/j.1600-6143.2011.03860.xopenalex-snapshot
Characterization of the Ileal Microbiota in Rejecting and Nonrejecting Recipients of Small Bowel Transplants
inferredcites →https://doi.org/10.1126/science.1206025openalex-snapshot
Predicting a Human Gut Microbiota’s Response to Diet in Gnotobiotic Mice
inferredcites →https://doi.org/10.1126/scitranslmed.3000322openalex-snapshot
The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice
inferredcites →https://doi.org/10.1128/aac.2.1.23openalex-snapshot
Fatty Acids and Derivatives as Antimicrobial Agents
inferredcites →https://doi.org/10.1128/aem.00132-17openalex-snapshot
Experimental Evaluation of Host Adaptation of Lactobacillus reuteri to Different Vertebrate Species
inferredcites →https://doi.org/10.1128/aem.00753-08openalex-snapshot
Ecological Role of Lactobacilli in the Gastrointestinal Tract: Implications for Fundamental and Biomedical Research
inferredcites →https://doi.org/10.1128/aem.01502-06openalex-snapshot
The Early Response to Acid Shock inLactobacillus reuteriInvolves the ClpL Chaperone and a Putative Cell Wall-Altering Esterase
inferredcites →https://doi.org/10.1128/aem.03006-05openalex-snapshot
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
inferredcites →https://doi.org/10.1128/br.18.2.147-163.1954openalex-snapshot
INFLUENCE OF TRACE AMOUNTS OF FATTY ACIDS ON THE GROWTH OF MICROORGANISMS
inferredcites →https://doi.org/10.1128/jb.00743-12openalex-snapshot
Membrane Disruption by Antimicrobial Fatty Acids Releases Low-Molecular-Weight Proteins from Staphylococcus aureus
inferredcites →https://doi.org/10.1128/jb.01122-06openalex-snapshot
Control of EpsE, the Phosphoglycosyltransferase Initiating Exopolysaccharide Synthesis in Streptococcus thermophilus , by EpsD Tyrosine Kinase
inferredcites →https://doi.org/10.1128/jb.02043-12openalex-snapshot
Transcriptional Regulation of Fatty Acid Biosynthesis in Lactococcus lactis
inferredcites →https://doi.org/10.1136/gut.3.4.315openalex-snapshot
On the site of absorption of fat from the human small intestine
inferredcites →https://doi.org/10.1139/o59-099openalex-snapshot
A RAPID METHOD OF TOTAL LIPID EXTRACTION AND PURIFICATION
inferredcites →https://doi.org/10.1139/w03-003openalex-snapshot
Lactobacillusgrowth and membrane composition in the presence of linoleic or conjugated linoleic acid
inferredcites →https://doi.org/10.1186/1471-2164-9-75openalex-snapshot
The RAST Server: Rapid Annotations using Subsystems Technology
inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot
Versatile and open software for comparing large genomes
inferredcites →https://doi.org/10.1186/gb-2014-15-7-r89openalex-snapshot
Host lifestyle affects human microbiota on daily timescales
inferredcites →https://doi.org/10.1211/jpp.60.1.0008openalex-snapshot
Measurements of rat and mouse gastrointestinal pH, fluid and lymphoid tissue, and implications for in-vivo experiments
inferredcites →https://doi.org/10.1371/journal.pbio.0060280openalex-snapshot
The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing
inferredcites →https://doi.org/10.1371/journal.pgen.1001314openalex-snapshot
The Evolution of Host Specialization in the Vertebrate Gut Symbiont Lactobacillus reuteri
inferredcites →https://doi.org/10.1371/journal.pgen.1004057openalex-snapshot
Molecular Characterization of Host-Specific Biofilm Formation in a Vertebrate Gut Symbiont
inferredcites →https://doi.org/10.1371/journal.pone.0009836openalex-snapshot
Short-Term Antibiotic Treatment Has Differing Long-Term Impacts on the Human Throat and Gut Microbiome
inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
inferredcites →https://doi.org/10.1371/journal.pone.0146021openalex-snapshot
Dose-Response Analysis Using R
inferredcites →https://doi.org/10.18637/jss.v067.i01openalex-snapshot
Fitting Linear Mixed-Effects Models Using lme4
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3920/bm2013.0017openalex-snapshot
A simulated mucus layer protects Lactobacillus reuteri from the inhibitory effects of linoleic acid
inferredcites →https://doi.org/10.3929/ethz-b-000105397openalex-snapshot
Fitting Linear Mixed-Effects Models Using lme4
inferredcites →https://doi.org/10.3945/ajcn.110.006643openalex-snapshot
Changes in consumption of omega-3 and omega-6 fatty acids in the United States during the 20th century
inferredcites →https://doi.org/10.7326/0003-4819-93-5-785_4openalex-snapshot
Nutrition and the Adult. Macronutrients.

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.ijfoodmicro.2022.109593openalex-snapshot
Research progress on conjugated linoleic acid bio-conversion in Bifidobacterium
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