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Whole-body single-cell sequencing of the Platynereis larva reveals a subdivision into apical versus non-apical tissues

https://doi.org/10.1101/167742
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Outgoing claims: the papers this work cites, builds on, or argues with.

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The polychaete Platynereis dumerilii (Annelida): a laboratory animal with spiralian cleavage, lifelong segment proliferation and a mixed benthic/pelagic life cycle
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Activity of nAChRs containing α9 subunits modulates synapse stabilization via bidirectional signaling programs
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Specification of the somatic musculature in Drosophila
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Calcium Sensing in Exocytosis
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Identification and characterization of a protostome homologue of peropsin from a jumping spider
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Distribution of B/K protein in rat brain
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Evolutionary aspects in intermediate filament proteins
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Molecular Architecture of Annelid Nerve Cord Supports Common Origin of Nervous System Centralization in Bilateria
inferredcites →https://doi.org/10.1016/j.cell.2007.04.041openalex-snapshot
Conserved Sensory-Neurosecretory Cell Types in Annelid and Fish Forebrain: Insights into Hypothalamus Evolution
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Coincident Pre- and Postsynaptic Activation Induces Dendritic Filopodia via Neurotrypsin-Dependent Agrin Cleavage
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Profiling by Image Registration Reveals Common Origin of Annelid Mushroom Bodies and Vertebrate Pallium
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Melatonin Signaling Controls Circadian Swimming Behavior in Marine Zooplankton
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A Single-Cell Transcriptome Atlas of the Human Pancreas
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The bilaterian forebrain: an evolutionary chimaera
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Multiciliated Cells
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A Conserved Developmental Mechanism Builds Complex Visual Systems in Insects and Vertebrates
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Towards a systems-level understanding of development in the marine annelid Platynereis dumerilii
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BMP-1/tolloid-like proteinases synchronize matrix assembly with growth factor activation to promote morphogenesis and tissue remodeling
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Neuropeptide Exocytosis Involving Synaptotagmin-4 and Oxytocin in Hypothalamic Programming of Body Weight and Energy Balance
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Regulatory Logic of Pan-Neuronal Gene Expression in C. elegans
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Critical re-evaluation of neuroglobin expression reveals conserved patterns among mammals
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Amalgam, an axon guidance Drosophila adhesion protein belonging to the immunoglobulin superfamily: Over-expression, purification and biophysical characterization
inferredcites →https://doi.org/10.1016/j.phrs.2016.01.034openalex-snapshot
Extended-Synaptotagmins (E-Syts); the extended story
inferredcites →https://doi.org/10.1016/j.tins.2014.05.007openalex-snapshot
Activity-controlled proteolytic cleavage at the synapse
inferredcites →https://doi.org/10.1016/j.ydbio.2006.10.015openalex-snapshot
Semaphorin 2a secreted by oenocytes signals through plexin B and plexin A to guide sensory axons in the Drosophila embryo
inferredcites →https://doi.org/10.1016/j.ydbio.2010.11.011openalex-snapshot
The unique and cooperative roles of the Grainy head-like transcription factors in epidermal development reflect unexpected target gene specificity
inferredcites →https://doi.org/10.1016/j.yexcr.2007.07.011openalex-snapshot
Central role of α9 acetylcholine receptor in coordinating keratinocyte adhesion and motility at the initiation of epithelialization
inferredcites →https://doi.org/10.1016/s0006-291x(03)00911-2openalex-snapshot
Molecular cloning and characterization of human, rat, and mouse synaptotagmin XV
inferredcites →https://doi.org/10.1016/s0896-6273(00)80451-1openalex-snapshot
Neurotactin Functions in Concert with Other Identified CAMs in Growth Cone Guidance in Drosophila
inferredcites →https://doi.org/10.1038/35035093openalex-snapshot
A vertebrate globin expressed in the brain
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Mechanism of phototaxis in marine zooplankton
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The evolution of gene expression levels in mammalian organs
inferredcites →https://doi.org/10.1038/nature14966openalex-snapshot
Single-cell messenger RNA sequencing reveals rare intestinal cell types
inferredcites →https://doi.org/10.1038/nbt.3209openalex-snapshot
High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin
inferredcites →https://doi.org/10.1038/ng.345openalex-snapshot
Segmental copy number variation shapes tissue transcriptomes
inferredcites →https://doi.org/10.1038/nmeth.2019openalex-snapshot
Fiji: an open-source platform for biological-image analysis
inferredcites →https://doi.org/10.1038/nmeth.2967openalex-snapshot
Bayesian approach to single-cell differential expression analysis
inferredcites →https://doi.org/10.1038/nn.4216openalex-snapshot
Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
inferredcites →https://doi.org/10.1038/nn.4462openalex-snapshot
Molecular interrogation of hypothalamic organization reveals distinct dopamine neuronal subtypes
inferredcites →https://doi.org/10.1038/nrg.2016.127openalex-snapshot
The origin and evolution of cell types
inferredcites →https://doi.org/10.1038/nrn.2015.15openalex-snapshot
From nerve net to nerve ring, nerve cord and brain — evolution of the nervous system
inferredcites →https://doi.org/10.1042/bc20100035openalex-snapshot
Transcriptional control of genes involved in ciliogenesis: a first step in making cilia
inferredcites →https://doi.org/10.1073/pnas.112632299openalex-snapshot
Neuronal loss and brain atrophy in mice lacking cathepsins B and L
inferredcites →https://doi.org/10.1073/pnas.1610602114openalex-snapshot
Whole-organism cellular gene-expression atlas reveals conserved cell types in the ventral nerve cord of Platynereis dumerilii
inferredcites →https://doi.org/10.1083/jcb.200312054openalex-snapshot
Synaptotagmins are trafficked to distinct subcellular domains including the postsynaptic compartment
inferredcites →https://doi.org/10.1093/bioinformatics/btl117openalex-snapshot
Pvclust: an R package for assessing the uncertainty in hierarchical clustering
inferredcites →https://doi.org/10.1093/bioinformatics/btl158openalex-snapshot
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot
HTSeq—a Python framework to work with high-throughput sequencing data
inferredcites →https://doi.org/10.1093/emboj/19.17.4463openalex-snapshot
Amalgam is a ligand for the transmembrane receptor neurotactin and is required for neurotactin‐mediated cell adhesion and axon fasciculation in Drosophila
inferredcites →https://doi.org/10.1093/nar/gkv007openalex-snapshot
limma powers differential expression analyses for RNA-sequencing and microarray studies
inferredcites →https://doi.org/10.1096/fj.07-100008openalex-snapshot
Neurotrypsin cleaves agrin locally at the synapse
inferredcites →https://doi.org/10.1126/science.1099955openalex-snapshot
Ciliary Photoreceptors with a Vertebrate-Type Opsin in an Invertebrate Brain
inferredcites →https://doi.org/10.1126/science.aaa1934openalex-snapshot
Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
inferredcites →https://doi.org/10.1146/annurev-cellbio-092910-154226openalex-snapshot
Regulation of Terminal Differentiation Programs in the Nervous System
inferredcites →https://doi.org/10.1152/physrev.00031.2010openalex-snapshot
Fiber Types in Mammalian Skeletal Muscles
inferredcites →https://doi.org/10.1152/physrev.00039.2011openalex-snapshot
Structure and Function of TMEM16 Proteins (Anoctamins)
inferredcites →https://doi.org/10.1159/000129698openalex-snapshot
Neuroglobin in the Rat Brain: Localization
inferredcites →https://doi.org/10.1186/1471-2164-14-906openalex-snapshot
The neuropeptide complement of the marine annelid Platynereis dumerilii
inferredcites →https://doi.org/10.1186/1741-7007-11-53openalex-snapshot
Ancient origin of somatic and visceral neurons
inferredcites →https://doi.org/10.1186/1741-7007-12-7openalex-snapshot
Larval body patterning and apical organs are conserved in animal evolution
inferredcites →https://doi.org/10.1186/1742-9994-7-31openalex-snapshot
The normal development of Platynereis dumerilii (Nereididae, Annelida)
inferredcites →https://doi.org/10.1186/1749-8104-7-39openalex-snapshot
The transcription factor Uncx4.1 acts in a short window of midbrain dopaminergic neuron differentiation
inferredcites →https://doi.org/10.1186/s13059-016-1008-yopenalex-snapshot
Gene-specific patterns of expression variation across organs and species
inferredcites →https://doi.org/10.1198/jasa.2010.tm09415openalex-snapshot
A Framework for Feature Selection in Clustering
inferredcites →https://doi.org/10.1242/dev.01591openalex-snapshot
Duplicated genes with split functions: independent roles of protocadherin15 orthologues in zebrafish hearing and vision
inferredcites →https://doi.org/10.1242/jcs.090852openalex-snapshot
Influence of matrix metalloproteinase MMP-9 on dendritic spine morphology
inferredcites →https://doi.org/10.1371/journal.pcbi.1000598openalex-snapshot
An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data
inferredcites →https://doi.org/10.1371/journal.pcbi.1004333openalex-snapshot
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data
inferredcites →https://doi.org/10.1371/journal.pone.0034462openalex-snapshot
Circadian Behaviour in Neuroglobin Deficient Mice
inferredcites →https://doi.org/10.1387/ijdb.140084ssopenalex-snapshot
Expression of the wnt gene complement in a spiral-cleaving embryo and trochophore larva
inferredcites →https://doi.org/10.1523/jneurosci.2075-14.2014openalex-snapshot
Peptidergic Cell-Specific Synaptotagmins inDrosophila: Localization to Dense-Core Granules and Regulation by the bHLH Protein DIMMED
inferredcites →https://doi.org/10.2144/000112023openalex-snapshot
Fluorescent Two-Color Whole Mount in Situ Hybridization in Platynereis Dumerilii (Polychaeta, Annelida), an Emerging Marine Molecular Model for Evolution and Development
inferredcites →https://doi.org/10.2144/000112462openalex-snapshot
Cellular Resolution Expression Profiling Using Confocal Detection of NBT/BCIP Precipitate by Reflection Microscopy
inferredcites →https://doi.org/10.3389/fendo.2013.00124openalex-snapshot
The Functional Significance of Synaptotagmin Diversity in Neuroendocrine Secretion
inferredcites →https://doi.org/10.3389/fnana.2015.00003openalex-snapshot
Patterns of hypothalamic regionalization in amphibians and reptiles: common traits revealed by a genoarchitectonic approach
inferredcites →https://doi.org/10.4161/cc.5.14.2918openalex-snapshot
The Receptor Tyrosine Kinase Met and Its Ligand Hepatocyte Growth Factor are Clustered at Excitatory Synapses and Can Enhance Clustering of Synaptic Proteins
inferredcites →https://doi.org/10.4161/nucl.20392openalex-snapshot
The function of lamins in the context of tissue building and maintenance
inferredcites →https://doi.org/10.48550/arxiv.1208.3145openalex-snapshot
Metric distances derived from cosine similarity and Pearson and Spearman correlations
inferredcites →https://doi.org/10.7554/elife.02730openalex-snapshot
Neuronal connectome of a sensory-motor circuit for visual navigation
inferredcites →https://doi.org/10.7554/elife.19607openalex-snapshot
The evolutionary origin of bilaterian smooth and striated myocytes
inferredcites →https://doi.org/10.7554/elife.26349openalex-snapshot
Synaptic and peptidergic connectome of a neurosecretory center in the annelid brain

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1371/journal.pone.0226156openalex-snapshot
A scalable culturing system for the marine annelid Platynereis dumerilii
inferred← citeshttps://doi.org/10.3389/fevo.2020.618007openalex-snapshot
Resolving Transcriptional States and Predicting Lineages in the Annelid Capitella teleta Using Single-Cell RNAseq
inferred← citeshttps://doi.org/10.7554/elife.26349openalex-snapshot
Synaptic and peptidergic connectome of a neurosecretory center in the annelid brain
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