On the public citation graph
Parallel loss of symbiosis genes in relatives of nitrogen-fixing non-legume Parasponia
0 signed · 120 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/978-1-4020-3547-0openalex-snapshot
Nitrogen-fixing Actinorhizal Symbioses
inferredcites →https://doi.org/10.1007/978-1-61779-228-1_1openalex-snapshot
Genome Size Determination Using Flow Cytometry of Propidium Iodide-Stained Nuclei
inferredcites →https://doi.org/10.1007/978-1-62703-613-9_2openalex-snapshot
Fluorescent In Situ Hybridization (FISH) on Pachytene Chromosomes as a Tool for Genome Characterization
inferredcites →https://doi.org/10.1007/bf02369969openalex-snapshot
TheParasponia parviflora—Rhizobium symbiosis. Host specificity, growth and nitrogen fixation under various conditions
inferredcites →https://doi.org/10.1007/s00122-013-2177-7openalex-snapshot
Copy number polymorphism in plant genomes
inferredcites →https://doi.org/10.1007/s00340-008-3127-yopenalex-snapshot
Laser-based systems for trace gas detection in life sciences
inferredcites →https://doi.org/10.1007/s10725-012-9734-yopenalex-snapshot
Efficiency of Agrobacterium rhizogenes–mediated root transformation of Parasponia and Trema is temperature dependent
inferredcites →https://doi.org/10.1016/b978-0-12-633210-0.x5001-1openalex-snapshot
The Biology of Frankia and Actinorhizal Plants
inferredcites →https://doi.org/10.1016/j.cub.2005.01.042openalex-snapshot
Symbiotic Leghemoglobins Are Crucial for Nitrogen Fixation in Legume Root Nodules but Not for General Plant Growth and Development
inferredcites →https://doi.org/10.1016/j.phytochem.2007.03.022openalex-snapshot
Down-regulation of hydroxycinnamoyl CoA: Shikimate hydroxycinnamoyl transferase in transgenic alfalfa affects lignification, development and forage quality
inferredcites →https://doi.org/10.1016/j.tplants.2016.01.012openalex-snapshot
What Does It Take to Evolve A Nitrogen-Fixing Endosymbiosis?
inferredcites →https://doi.org/10.1021/bi1002844openalex-snapshot
Trema and Parasponia Hemoglobins Reveal Convergent Evolution of Oxygen Transport in Plants
inferredcites →https://doi.org/10.1021/bi2002423openalex-snapshot
Crystal Structures of Parasponia and Trema Hemoglobins: Differential Heme Coordination Is Linked to Quaternary Structure
inferredcites →https://doi.org/10.1038/244459a0openalex-snapshot
Symbiosis between Rhizobium and the Non-legume, Trema aspera
inferredcites →https://doi.org/10.1038/274190a0openalex-snapshot
NH4Cl and other weak bases in the activation of sea urchin eggs
inferredcites →https://doi.org/10.1038/274190c0openalex-snapshot
Nitrogen-fixing root nodules in Ulmaceae
inferredcites →https://doi.org/10.1038/46058openalex-snapshot
A plant regulator controlling development of symbiotic root nodules
inferredcites →https://doi.org/10.1038/nature02039openalex-snapshot
Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases
inferredcites →https://doi.org/10.1038/nature02045openalex-snapshot
A receptor kinase gene of the LysM type is involved in legumeperception of rhizobial signals
inferredcites →https://doi.org/10.1038/nature06949openalex-snapshot
High-resolution carbon dioxide concentration record 650,000–800,000 years before present
inferredcites →https://doi.org/10.1038/nature08670openalex-snapshot
Genome sequence of the palaeopolyploid soybean
inferredcites →https://doi.org/10.1038/nature09149openalex-snapshot
The polar ocean and glacial cycles in atmospheric CO2 concentration
inferredcites →https://doi.org/10.1038/nature10625openalex-snapshot
The Medicago genome provides insight into the evolution of rhizobial symbioses
inferredcites →https://doi.org/10.1038/nature14611openalex-snapshot
Receptor-mediated exopolysaccharide perception controls bacterial infection
inferredcites →https://doi.org/10.1038/nature14949openalex-snapshot
Evolution of endemism on a young tropical mountain
inferredcites →https://doi.org/10.1038/nbt.1621openalex-snapshot
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/ncomms14534openalex-snapshot
Differential regulation of the Epr3 receptor coordinates membrane-restricted rhizobial colonization of root nodule primordia
inferredcites →https://doi.org/10.1038/ncomms5087openalex-snapshot
A single evolutionary innovation drives the deep evolution of symbiotic N2-fixation in angiosperms
inferredcites →https://doi.org/10.1038/ng.2586openalex-snapshot
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
inferredcites →https://doi.org/10.1038/ng.654openalex-snapshot
The genome of the domesticated apple (Malus × domestica Borkh.)
inferredcites →https://doi.org/10.1038/ng.740openalex-snapshot
The genome of woodland strawberry (Fragaria vesca)
inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot
HISAT: a fast spliced aligner with low memory requirements
inferredcites →https://doi.org/10.1038/nprot.2013.084openalex-snapshot
De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity
inferredcites →https://doi.org/10.1038/nrmicro1987openalex-snapshot
Arbuscular mycorrhiza: the mother of plant root endosymbioses
inferredcites →https://doi.org/10.1038/nrmicro2990openalex-snapshot
Speak, friend, and enter: signalling systems that promote beneficial symbiotic associations in plants
inferredcites →https://doi.org/10.1038/srep14023openalex-snapshot
Large-scale phylogenetic analyses reveal multiple gains of actinorhizal nitrogen-fixing symbioses in angiosperms associated with climate change
inferredcites →https://doi.org/10.1071/bi9701015openalex-snapshot
The Quantitative Relationship between Nitrogen Fixation and the Acetylene-Reduction Assay
inferredcites →https://doi.org/10.1073/pnas.0710273105openalex-snapshot
The RPG gene of Medicago truncatula controls Rhizobium -directed polar growth during infection
inferredcites →https://doi.org/10.1073/pnas.1017351108openalex-snapshot
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
inferredcites →https://doi.org/10.1073/pnas.1205171109openalex-snapshot
Legume receptors perceive the rhizobial lipochitin oligosaccharide signal molecules by direct binding
inferredcites →https://doi.org/10.1073/pnas.1515426112openalex-snapshot
Algal ancestor of land plants was preadapted for symbiosis
inferredcites →https://doi.org/10.1073/pnas.84.5.1319openalex-snapshot
Rhizobium symbiotic genes required for nodulation of legume and nonlegume hosts
inferredcites →https://doi.org/10.1073/pnas.92.7.2647openalex-snapshot
Chloroplast gene sequence data suggest a single origin of the predisposition for symbiotic nitrogen fixation in angiosperms.
inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot
MrBayes 3: Bayesian phylogenetic inference under mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btm071openalex-snapshot
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btn013openalex-snapshot
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btq683openalex-snapshot
Scaffolding pre-assembled contigs using SSPACE
inferredcites →https://doi.org/10.1093/bioinformatics/btr011openalex-snapshot
A fast, lock-free approach for efficient parallel counting of occurrences of k -mers
inferredcites →https://doi.org/10.1093/bioinformatics/bts174openalex-snapshot
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
inferredcites →https://doi.org/10.1093/bioinformatics/btt054openalex-snapshot
RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads
inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/bioinformatics/btv661openalex-snapshot
BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS
inferredcites →https://doi.org/10.1093/jxb/44.5.863openalex-snapshot
Effective Nodulation of Micro-Propagated Shoots of the Non-LegumeParasponia andersoniibyBradyrhizobium
inferredcites →https://doi.org/10.1093/jxb/eru098openalex-snapshot
Synthetic biology approaches to engineering the nitrogen symbiosis in cereals
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msw260openalex-snapshot
PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses
inferredcites →https://doi.org/10.1093/nar/gkm965openalex-snapshot
The Arabidopsis Information Resource (TAIR): gene structure and function annotation
inferredcites →https://doi.org/10.1093/nar/gkq1268openalex-snapshot
RATT: Rapid Annotation Transfer Tool
inferredcites →https://doi.org/10.1093/nar/gkq862openalex-snapshot
MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
inferredcites →https://doi.org/10.1093/nar/gku557openalex-snapshot
Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm
inferredcites →https://doi.org/10.1093/nar/gku989openalex-snapshot
UniProt: a hub for protein information
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040454openalex-snapshot
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
inferredcites →https://doi.org/10.1093/pcp/pcu169openalex-snapshot
The Draft Genome of Hop (Humulus lupulus), an Essence for Brewing
inferredcites →https://doi.org/10.1094/mpmi-05-11-0114openalex-snapshot
Phylogenetic Perspectives on the Origins of Nodulation
inferredcites →https://doi.org/10.1094/mpmi-06-15-0130-ropenalex-snapshot
Haustorium Formation in Medicago truncatula Roots Infected by Phytophthora palmivora Does Not Involve the Common Endosymbiotic Program Shared by Arbuscular Mycorrhizal Fungi and Rhizobia
inferredcites →https://doi.org/10.1094/mpmi-11-11-0304openalex-snapshot
Nonlegume Parasponia andersonii Deploys a Broad Rhizobium Host Range Strategy Resulting in Largely Variable Symbiotic Effectiveness
inferredcites →https://doi.org/10.1101/gad.402806openalex-snapshot
MtHAP2-1 is a key transcriptional regulator of symbiotic nodule development regulated by microRNA169 in Medicago truncatula
inferredcites →https://doi.org/10.1104/pp.102.016071openalex-snapshot
The Sym35 Gene Required for Root Nodule Development in Pea Is an Ortholog of Nin from Lotus japonicus
inferredcites →https://doi.org/10.1104/pp.106.084657openalex-snapshot
The Medicago truncatula Lysine Motif-Receptor-Like Kinase Gene Family Includes NFP and New Nodule-Expressed Genes
inferredcites →https://doi.org/10.1104/pp.106.093021openalex-snapshot
Medicago truncatula NIN Is Essential for Rhizobial-Independent Nodule Organogenesis Induced by Autoactive Calcium/Calmodulin-Dependent Protein Kinase
inferredcites →https://doi.org/10.1104/pp.113.230144openalex-snapshot
MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
inferredcites →https://doi.org/10.1104/pp.113.232421openalex-snapshot
Lignin Modification Leads to Increased Nodule Numbers in Alfalfa
inferredcites →https://doi.org/10.1104/pp.15.01144openalex-snapshot
A Phylogenetically Conserved Group of Nuclear Factor-Y Transcription Factors Interact to Control Nodulation in Legumes
inferredcites →https://doi.org/10.1104/pp.92.2.480openalex-snapshot
Transient Responses of Nitrogenase to Acetylene and Oxygen in Actinorhizal Nodules and Cultured Frankia
inferredcites →https://doi.org/10.1105/tpc.15.00461openalex-snapshot
The NIN Transcription Factor Coordinates Diverse Nodulation Programs in Different Tissues of the Medicago truncatula Root
inferredcites →https://doi.org/10.1109/tcbb.2013.68openalex-snapshot
GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations
inferredcites →https://doi.org/10.1111/bij.12642openalex-snapshot
Herbarium genomics: plastome sequence assembly from a range of herbarium specimens using an Iterative Organelle Genome Assembly pipeline
inferredcites →https://doi.org/10.1111/j.1365-2486.1995.tb00009.xopenalex-snapshot
Was low atmospheric CO2 during the Pleistocene a limiting factor for the origin of agriculture?
inferredcites →https://doi.org/10.1111/j.1399-3054.1987.tb06156.xopenalex-snapshot
The acetylene reduction assay inactivates root nodule uptake hydrogenase in some actinorhizal plants
inferredcites →https://doi.org/10.1111/j.1469-8137.2007.02015.xopenalex-snapshot
Evolving ideas of legume evolution and diversity: a taxonomic perspective on the occurrence of nodulation
inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03441.xopenalex-snapshot
Plant responses to low [CO2] of the past
inferredcites →https://doi.org/10.1111/nph.13464openalex-snapshot
Bacterial‐induced calcium oscillations are common to nitrogen‐fixing associations of nodulating legumes and non‐legumes
inferredcites →https://doi.org/10.1111/nph.13506openalex-snapshot
The Casuarina NIN gene is transcriptionally activated throughout Frankia root infection as well as in response to bacterial diffusible signals
inferredcites →https://doi.org/10.1111/nph.14263openalex-snapshot
Biology and evolution of arbuscular mycorrhizal symbiosis in the light of genomics
inferredcites →https://doi.org/10.1111/tpj.12442openalex-snapshot
An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser‐capture microdissection coupled to RNA sequencing
inferredcites →https://doi.org/10.1126/science.1090074openalex-snapshot
LysM Domain Receptor Kinases Regulating Rhizobial Nod Factor-Induced Infection
inferredcites →https://doi.org/10.1126/science.1128691openalex-snapshot
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)
inferredcites →https://doi.org/10.1126/science.1198181openalex-snapshot
LysM-Type Mycorrhizal Receptor Recruited for Rhizobium Symbiosis in Nonlegume Parasponia
inferredcites →https://doi.org/10.1130/g39213.1openalex-snapshot
Nitrogen-fixing symbiosis inferred from stable isotope analysis of fossil tree rings from the Oligocene of Ethiopia
inferredcites →https://doi.org/10.1139/b80-196openalex-snapshot
Ultrastructural evidence for the existence of actinorhizal symbioses in the late Pleistocene
inferredcites →https://doi.org/10.1146/annurev-arplant-050312-120235openalex-snapshot
Transport and Metabolism in Legume-Rhizobia Symbioses
inferredcites →https://doi.org/10.1146/annurev.nu.13.070193.001533openalex-snapshot
Biological Nitrogen Fixation
inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot
Versatile and open software for comparing large genomes
inferredcites →https://doi.org/10.1186/gb-2008-9-1-r7openalex-snapshot
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
inferredcites →https://doi.org/10.1186/s12864-016-3140-1openalex-snapshot
An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH
inferredcites →https://doi.org/10.1186/s13059-015-0721-2openalex-snapshot
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
inferredcites →https://doi.org/10.1186/s13100-015-0041-9openalex-snapshot
Repbase Update, a database of repetitive elements in eukaryotic genomes
inferredcites →https://doi.org/10.12705/623.9openalex-snapshot
Molecular phylogenetics and character evolution of Cannabaceae
inferredcites →https://doi.org/10.1371/journal.pgen.1003352openalex-snapshot
NODULE INCEPTION Directly Targets NF-Y Subunit Genes to Regulate Essential Processes of Root Nodule Development in Lotus japonicus
inferredcites →https://doi.org/10.1371/journal.pgen.1006433openalex-snapshot
The Jujube Genome Provides Insights into Genome Evolution and the Domestication of Sweetness/Acidity Taste in Fruit Trees
inferredcites →https://doi.org/10.1371/journal.pone.0047885openalex-snapshot
One-Step Agrobacterium Mediated Transformation of Eight Genes Essential for Rhizobium Symbiotic Signaling Using the Novel Binary Vector System pHUGE
inferredcites →https://doi.org/10.1371/journal.pone.0052249openalex-snapshot
FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads
inferredcites →https://doi.org/10.2174/1875036201307010001openalex-snapshot
Comparison of Sequencing Utility Programs
inferredcites →https://doi.org/10.2307/1939421openalex-snapshot
Increasing CO2: Comparative Responses of the C4 Grass Schizachyrium and Grassland Invader Prosopis
inferredcites →https://doi.org/10.3732/ajb.1600260openalex-snapshot
Chasing unicorns: Nodulation origins and the paradox of novelty
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1007/978-3-031-24181-9_5openalex-snapshot
Diversity and Evolution of Nitrogen Fixing Bacteria
inferred← citeshttps://doi.org/10.1016/j.molp.2021.02.006openalex-snapshot
Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in Fabaceae
inferred← citeshttps://doi.org/10.1016/j.pbi.2017.12.001openalex-snapshot
Symbiotic nitrogen fixation by rhizobia — the roots of a success story
inferred← citeshttps://doi.org/10.1111/tpj.15242openalex-snapshot
The BOP‐type co‐transcriptional regulator NODULE ROOT1 promotes stem secondary growth of the tropical Cannabaceae tree Parasponia andersonii
inferred← citeshttps://doi.org/10.18174/419674openalex-snapshot
Dissecting hormonal pathways in nitrogen-fixing rhizobium symbioses
inferred← citeshttps://doi.org/10.3389/fpls.2018.00284openalex-snapshot
CRISPR/Cas9-Mediated Mutagenesis of Four Putative Symbiosis Genes of the Tropical Tree Parasponia andersonii Reveals Novel Phenotypes
inferred← citeshttps://doi.org/10.70675/fcc24cafz1455z4c0az90c3z37ac22e97a1dopenalex-snapshot
Analyse génétique et moléculaire de l'établissement de la symbiose Nod-indépendante chez la légumineuse tropicale Aeschynomene evenia
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.