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Dynamic marine viral infections and major contribution to photosynthetic processes shown by regional and seasonal picoplankton metatranscriptomes

https://doi.org/10.1101/176644
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-4684-5490-1_10openalex-snapshot
Phages of Cyanobacteria
inferredcites →https://doi.org/10.1016/j.mib.2016.04.002openalex-snapshot
Viral metabolic reprogramming in marine ecosystems
inferredcites →https://doi.org/10.1017/s0025315406013415openalex-snapshot
A temporal and spatial investigation of cyanophage abundance in the Gulf of Aqaba, Red Sea
inferredcites →https://doi.org/10.1038/343060a0openalex-snapshot
Viral mortality of marine bacteria and cyanobacteria
inferredcites →https://doi.org/10.1038/ismej.2007.67openalex-snapshot
Viral photosynthetic reaction center genes and transcripts in the marine environment
inferredcites →https://doi.org/10.1038/ismej.2014.198openalex-snapshot
Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities
inferredcites →https://doi.org/10.1038/ismej.2017.29openalex-snapshot
Ecological dynamics and co-occurrence among marine phytoplankton, bacteria and myoviruses shows microdiversity matters
inferredcites →https://doi.org/10.1038/nature01929openalex-snapshot
Cyanophages infecting the oceanic cyanobacterium Prochlorococcus
inferredcites →https://doi.org/10.1038/nature03959openalex-snapshot
Genome sequencing in microfabricated high-density picolitre reactors
inferredcites →https://doi.org/10.1038/nature04111openalex-snapshot
Photosynthesis genes in marine viruses yield proteins during host infection
inferredcites →https://doi.org/10.1038/nature13459openalex-snapshot
Viral tagging reveals discrete populations in Synechococcus viral genome sequence space
inferredcites →https://doi.org/10.1038/nature19094openalex-snapshot
Uncovering Earth’s virome
inferredcites →https://doi.org/10.1038/ncomms15892openalex-snapshot
Single-virus genomics reveals hidden cosmopolitan and abundant viruses
inferredcites →https://doi.org/10.1038/ncomms16054openalex-snapshot
Virus-host relationships of marine single-celled eukaryotes resolved from metatranscriptomics
inferredcites →https://doi.org/10.1038/nrmicro1750openalex-snapshot
Marine viruses — major players in the global ecosystem
inferredcites →https://doi.org/10.1073/pnas.1222099110openalex-snapshot
Pattern and synchrony of gene expression among sympatric marine microbial populations
inferredcites →https://doi.org/10.1093/bioinformatics/btp163openalex-snapshot
Biopython: freely available Python tools for computational molecular biology and bioinformatics
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/btr026openalex-snapshot
Quality control and preprocessing of metagenomic datasets
inferredcites →https://doi.org/10.1093/bioinformatics/btt593openalex-snapshot
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/nar/gkv1344openalex-snapshot
The Pfam protein families database: towards a more sustainable future
inferredcites →https://doi.org/10.1093/nar/gkw290openalex-snapshot
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026334openalex-snapshot
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
inferredcites →https://doi.org/10.1101/155358openalex-snapshot
Evaluating Metagenome Assembly on a Simple Defined Community with Many Strain Variants
inferredcites →https://doi.org/10.1111/1462-2920.13023openalex-snapshot
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
inferredcites →https://doi.org/10.1111/1462-2920.13291openalex-snapshot
RNA viruses as major contributors to Antarctic virioplankton
inferredcites →https://doi.org/10.1111/j.1462-2920.2005.00969.xopenalex-snapshot
Transcription of a ‘photosynthetic’ T4‐type phage during infection of a marine cyanobacterium
inferredcites →https://doi.org/10.1111/j.1462-2920.2007.01452.xopenalex-snapshot
Prevalence of highly host‐specific cyanophages in the estuarine environment
inferredcites →https://doi.org/10.1111/j.1462-2920.2012.02704.xopenalex-snapshot
Phylogenomics of T4 cyanophages: lateral gene transfer in the ‘core’ and origins of host genes
inferredcites →https://doi.org/10.1111/j.1462-2920.2012.02744.xopenalex-snapshot
Seasonality and monthly dynamics of marine myovirus communities
inferredcites →https://doi.org/10.1111/j.1574-6968.2010.02054.xopenalex-snapshot
Light-dependent adsorption of photosynthetic cyanophages to Synechococcus sp. WH7803
inferredcites →https://doi.org/10.1126/science.1252476openalex-snapshot
Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages
inferredcites →https://doi.org/10.1126/science.1261498openalex-snapshot
Patterns and ecological drivers of ocean viral communities
inferredcites →https://doi.org/10.1126/science.1262073openalex-snapshot
Determinants of community structure in the global plankton interactome
inferredcites →https://doi.org/10.1128/aem.00878-14openalex-snapshot
Using Signature Genes as Tools To Assess Environmental Viral Ecology and Diversity
inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
inferredcites →https://doi.org/10.1128/mmbr.64.1.69-114.2000openalex-snapshot
Virioplankton: Viruses in Aquatic Ecosystems
inferredcites →https://doi.org/10.1128/msphere.00359-16openalex-snapshot
Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean
inferredcites →https://doi.org/10.1128/msystems.00125-16openalex-snapshot
The Baltic Sea Virome: Diversity and Transcriptional Activity of DNA and RNA Viruses
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2105-11-119openalex-snapshot
Prodigal: prokaryotic gene recognition and translation initiation site identification
inferredcites →https://doi.org/10.1186/1471-2105-11-431openalex-snapshot
Hidden Markov model speed heuristic and iterative HMM search procedure
inferredcites →https://doi.org/10.1186/1471-2105-11-538openalex-snapshot
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
inferredcites →https://doi.org/10.1186/1471-2105-8-64openalex-snapshot
Minimus: a fast, lightweight genome assembler
inferredcites →https://doi.org/10.1186/s40168-017-0283-5openalex-snapshot
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
inferredcites →https://doi.org/10.1371/journal.pone.0042047openalex-snapshot
Metagenomic Exploration of Viruses throughout the Indian Ocean
inferredcites →https://doi.org/10.7717/peerj.1319openalex-snapshot
Anvi’o: an advanced analysis and visualization platform for ‘omics data
inferredcites →https://doi.org/10.7717/peerj.985openalex-snapshot
VirSorter: mining viral signal from microbial genomic data

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41579-019-0270-xopenalex-snapshot
Metabolic and biogeochemical consequences of viral infection in aquatic ecosystems
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