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Role of gene body methylation in coral acclimatization and adaptation

https://doi.org/10.1101/184457
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf00346432openalex-snapshot
Lipids of some Caribbean and Red Sea corals: total lipid, wax esters, triglycerides and fatty acids
inferredcites →https://doi.org/10.1016/j.ab.2004.12.001openalex-snapshot
Carbohydrate analysis by a phenol–sulfuric acid method in microplate format
inferredcites →https://doi.org/10.1016/j.pbi.2016.12.007openalex-snapshot
Gene body DNA methylation in plants
inferredcites →https://doi.org/10.1016/s0022-0981(05)80006-1openalex-snapshot
The temporal pattern and rate of release of zooxanthellae from the reef coral Pocillopora damicornis (Linnaeus) under nitrogen-enrichment and control conditions
inferredcites →https://doi.org/10.1038/nature09165openalex-snapshot
Conserved role of intragenic DNA methylation in regulating alternative promoters
inferredcites →https://doi.org/10.1038/nature10249openalex-snapshot
Using the Acropora digitifera genome to understand coral responses to environmental change
inferredcites →https://doi.org/10.1038/nature21373openalex-snapshot
Intragenic DNA methylation prevents spurious transcription initiation
inferredcites →https://doi.org/10.1038/ng.3292openalex-snapshot
Genome-wide patterns and properties of de novo mutations in humans
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nrg3142openalex-snapshot
Epigenetics and the environment: emerging patterns and implications
inferredcites →https://doi.org/10.1038/s41559-016-0014openalex-snapshot
Gene expression plasticity as a mechanism of coral adaptation to a variable environment
inferredcites →https://doi.org/10.1093/bioinformatics/bti1018openalex-snapshot
De novo identification of repeat families in large genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btr167openalex-snapshot
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot
HTSeq—a Python framework to work with high-throughput sequencing data
inferredcites →https://doi.org/10.1093/molbev/mss062openalex-snapshot
The Evolution of Invertebrate Gene Body Methylation
inferredcites →https://doi.org/10.1093/molbev/msw100openalex-snapshot
Evolutionary Consequences of DNA Methylation in a Basal Metazoan
inferredcites →https://doi.org/10.1093/nar/8.7.1499openalex-snapshot
DNA methylation and the frequency of CpG in animal DNA
inferredcites →https://doi.org/10.1101/gr.88502openalex-snapshot
Automated De Novo Identification of Repeat Sequence Families in Sequenced Genomes
inferredcites →https://doi.org/10.1111/1755-0998.12529openalex-snapshot
Evaluation of TagSeq, a reliable low‐cost alternative for RNA seq
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05205.xopenalex-snapshot
Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA-Seq procedure
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05328.xopenalex-snapshot
Historical and contemporary factors shape the population genetic structure of the broadcast spawning coral, Acropora millepora, on the Great Barrier Reef
inferredcites →https://doi.org/10.1111/j.1461-0248.2004.00684.xopenalex-snapshot
Conceptual issues in local adaptation
inferredcites →https://doi.org/10.1111/jeb.13130openalex-snapshot
Epigenetics in natural animal populations
inferredcites →https://doi.org/10.1111/mec.13563openalex-snapshot
Species‐wide patterns of DNA methylation variation in Quercus lobata and their association with climate gradients
inferredcites →https://doi.org/10.1111/mec.13573openalex-snapshot
The multivariate association between genomewide DNA methylation and climate across the range of Arabidopsis thaliana
inferredcites →https://doi.org/10.1126/sciadv.aar8028openalex-snapshot
Epigenome-associated phenotypic acclimatization to ocean acidification in a reef-building coral
inferredcites →https://doi.org/10.1146/annurev-ento-010814-020803openalex-snapshot
DNA Methylation in Social Insects: How Epigenetics Can Control Behavior and Longevity
inferredcites →https://doi.org/10.1186/1471-2148-12-217openalex-snapshot
Protein evolution in two co-occurring types of Symbiodinium: an exploration into the genetic basis of thermal tolerance in Symbiodinium clade D
inferredcites →https://doi.org/10.1186/1471-2156-11-94openalex-snapshot
Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
inferredcites →https://doi.org/10.1186/1471-2164-15-1109openalex-snapshot
Bimodal signatures of germline methylation are linked with gene expression plasticity in the coral Acropora millepora
inferredcites →https://doi.org/10.1186/s12859-014-0356-4openalex-snapshot
ANGSD: Analysis of Next Generation Sequencing Data
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1186/s13059-017-1230-2openalex-snapshot
An evolutionary case for functional gene body methylation in plants and animals
inferredcites →https://doi.org/10.13140/rg.2.2.17525.52964openalex-snapshot
Marine Monitoring Program: Annual Report for inshore water quality monitoring 2016-2017
inferredcites →https://doi.org/10.1371/journal.pcbi.1000410openalex-snapshot
Understanding the Adaptive Growth Strategy of Lactobacillus plantarum by In Silico Optimisation
inferredcites →https://doi.org/10.1371/journal.pgen.1000144openalex-snapshot
Patterns of Positive Selection in Six Mammalian Genomes
inferredcites →https://doi.org/10.1371/journal.pgen.1007220openalex-snapshot
Potential and limits for rapid genetic adaptation to warming in a Great Barrier Reef coral
inferredcites →https://doi.org/10.1371/journal.pone.0035269openalex-snapshot
Symbiodinium Transcriptomes: Genome Insights into the Dinoflagellate Symbionts of Reef-Building Corals
inferredcites →https://doi.org/10.18632/oncotarget.497openalex-snapshot
On the presence and role of human gene-body DNA methylation
inferredcites →https://doi.org/10.3389/fmars.2017.00004openalex-snapshot
Ecological Epigenetics in Marine Metazoans
inferredcites →https://doi.org/10.3389/fphys.2011.00052openalex-snapshot
Change in sympathetic nerve firing pattern associated with dietary weight loss in the metabolic syndrome
inferredcites →https://doi.org/10.3389/fphys.2011.00116openalex-snapshot
Is There a Relationship between DNA Methylation and Phenotypic Plasticity in Invertebrates?
inferredcites →https://doi.org/10.4135/9781412971874.n145openalex-snapshot
Vegan

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1126/sciadv.aat2142openalex-snapshot
DNA methylation regulates transcriptional homeostasis of algal endosymbiosis in the coral model Aiptasia
inferred← citeshttps://doi.org/10.1146/annurev-marine-010318-095114openalex-snapshot
Marine Environmental Epigenetics
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