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A unified framework for dissecting the effects of common signals on functional and effective connectivity analyses: power, coherence, and Granger causality

https://doi.org/10.1101/186122
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Granger Causality: Basic Theory and Application to Neuroscience
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New Introduction to Multiple Time Series Analysis
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Constructing Surrogate Data to Control for Artifacts of Volume Conduction for Functional Connectivity Measures
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Directed Information Measures in Neuroscience
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The reference problem and mapping of coherence: A simulation study
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EEG cohererence and reference signals: experimental results and mathematical explanations
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On the spectral formulation of Granger causality
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A unified treatment of the reference estimation problem in depth EEG recordings
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Identifying true brain interaction from EEG data using the imaginary part of coherency
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Cortical Hypersynchrony Predicts Breakdown of Sensory Processing during Loss of Consciousness
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Exploring the brain network: A review on resting-state fMRI functional connectivity
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Denoising neural data with state-space smoothing: Method and application
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Connectivity measures applied to human brain electrophysiological data
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Estimating Granger causality after stimulus onset: A cautionary note
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Wiener–Granger Causality: A well established methodology
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Measuring functional connectivity in MEG: A multivariate approach insensitive to linear source leakage
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Granger causality revisited
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A DCM study of spectral asymmetries in feedforward and feedback connections between visual areas V1 and V4 in the monkey
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A symmetric multivariate leakage correction for MEG connectomes
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Attentional Stimulus Selection through Selective Synchronization between Monkey Visual Areas
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Analysis of Dynamic Brain Imaging Data
inferredcites →https://doi.org/10.1016/s0013-4694(97)00066-7openalex-snapshot
EEG coherency
inferredcites →https://doi.org/10.1016/s1388-2457(01)00739-8openalex-snapshot
Trial-to-trial variability of cortical evoked responses: implications for the analysis of functional connectivity
inferredcites →https://doi.org/10.1038/nn.3101openalex-snapshot
Large-scale cortical correlation structure of spontaneous oscillatory activity
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What does gamma coherence tell us about inter-regional neural communication?
inferredcites →https://doi.org/10.1038/nn.4179openalex-snapshot
A neuromarker of sustained attention from whole-brain functional connectivity
inferredcites →https://doi.org/10.1038/nn1054openalex-snapshot
Salience modulates 20–30 Hz brain activity in Drosophila
inferredcites →https://doi.org/10.1073/pnas.1402773111openalex-snapshot
Alpha and gamma oscillations characterize feedback and feedforward processing in monkey visual cortex
inferredcites →https://doi.org/10.1073/pnas.1704663114openalex-snapshot
A study of problems encountered in Granger causality analysis from a neuroscience perspective
inferredcites →https://doi.org/10.1080/01621459.1982.10477803openalex-snapshot
Measurement of Linear Dependence and Feedback Between Multiple Time Series
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Measures of Conditional Linear Dependence and Feedback Between Time Series
inferredcites →https://doi.org/10.1088/0967-3334/26/3/003openalex-snapshot
A comparative study of different references for EEG spectral mapping: the issue of the neutral reference and the use of the infinity reference
inferredcites →https://doi.org/10.1093/acprof:oso/9780195178081.001.0001openalex-snapshot
Observed Brain Dynamics
inferredcites →https://doi.org/10.1097/aln.0b013e3181f697f5openalex-snapshot
Breakdown of within- and between-network Resting State Functional Magnetic Resonance Imaging Connectivity during Propofol-induced Loss of Consciousness
inferredcites →https://doi.org/10.1097/aln.0b013e31829103f5openalex-snapshot
Disruption of Frontal–Parietal Communication by Ketamine, Propofol, and Sevoflurane
inferredcites →https://doi.org/10.1098/rsta.2011.0610openalex-snapshot
Multivariate Granger causality: an estimation framework based on factorization of the spectral density matrix
inferredcites →https://doi.org/10.1098/rsta.2011.0618openalex-snapshot
A framework for assessing frequency domain causality in physiological time series with instantaneous effects
inferredcites →https://doi.org/10.1101/161976openalex-snapshot
Isoflurane reduces feedback in the fruit fly brain
inferredcites →https://doi.org/10.1103/physreve.75.031123openalex-snapshot
Mitigating the effects of measurement noise on Granger causality
inferredcites →https://doi.org/10.1103/physrevlett.100.018701openalex-snapshot
Estimating Granger Causality from Fourier and Wavelet Transforms of Time Series Data
inferredcites →https://doi.org/10.1109/tsmcb.2009.2037237openalex-snapshot
On the Recording Reference Contribution to EEG Correlation, Phase Synchorony, and Coherence
inferredcites →https://doi.org/10.1115/1.3269865openalex-snapshot
Random Data-Analysis and Measurement Procedures
inferredcites →https://doi.org/10.1126/science.1171402openalex-snapshot
High-Frequency, Long-Range Coupling Between Prefrontal and Visual Cortex During Attention
inferredcites →https://doi.org/10.1137/0123044openalex-snapshot
The Factorization of Matricial Spectral Densities
inferredcites →https://doi.org/10.1152/jn.00414.2013openalex-snapshot
Multichannel brain recordings in behavingDrosophilareveal oscillatory activity and local coherence in response to sensory stimulation and circuit activation
inferredcites →https://doi.org/10.1155/2011/156869openalex-snapshot
FieldTrip: Open Source Software for Advanced Analysis of MEG, EEG, and Invasive Electrophysiological Data
inferredcites →https://doi.org/10.1155/2011/720971openalex-snapshot
Unveiling the Biometric Potential of Finger-Based ECG Signals
inferredcites →https://doi.org/10.1162/089976601300014312openalex-snapshot
Sampling Properties of the Spectrum and Coherency of Sequences of Action Potentials
inferredcites →https://doi.org/10.1162/neco_a_00798openalex-snapshot
Neural Network Spectral Robustness under Perturbations of the Underlying Graph
inferredcites →https://doi.org/10.1162/neco_a_00827openalex-snapshot
Effect of Reference Scheme on Power and Phase of the Local Field Potential
inferredcites →https://doi.org/10.1213/ane.0000000000001353openalex-snapshot
Disconnecting Consciousness: Is There a Common Anesthetic End Point?
inferredcites →https://doi.org/10.1371/journal.pone.0029072openalex-snapshot
Granger Causality Analysis of Steady-State Electroencephalographic Signals during Propofol-Induced Anaesthesia
inferredcites →https://doi.org/10.1371/journal.pone.0081553openalex-snapshot
Reconstructing Coherent Networks from Electroencephalography and Magnetoencephalography with Reduced Contamination from Volume Conduction or Magnetic Field Spread
inferredcites →https://doi.org/10.1523/eneuro.0116-16.2016openalex-snapshot
Local Versus Global Effects of Isoflurane Anesthesia on Visual Processing in the Fly Brain
inferredcites →https://doi.org/10.1523/jneurosci.0691-15.2015openalex-snapshot
Closed-Loop Behavioral Control Increases Coherence in the Fly Brain
inferredcites →https://doi.org/10.1523/jneurosci.4399-14.2015openalex-snapshot
Granger Causality Analysis in Neuroscience and Neuroimaging
inferredcites →https://doi.org/10.3389/fnins.2014.00405openalex-snapshot
A systematic framework for functional connectivity measures
inferredcites →https://doi.org/10.3389/fnins.2017.00368openalex-snapshot
How Different EEG References Influence Sensor Level Functional Connectivity Graphs
inferredcites →https://doi.org/10.3389/fnsys.2010.00031openalex-snapshot
Distinct Superficial and deep laminar domains of activity in the visual cortex during rest and stimulation
inferredcites →https://doi.org/10.3389/fnsys.2012.00003openalex-snapshot
Introduction to Research Topic – Brain Connectivity Analysis: Investigating Brain Disorders. Part 1: The Review Articles
inferredcites →https://doi.org/10.3389/fnsys.2015.00175openalex-snapshot
A Tutorial Review of Functional Connectivity Analysis Methods and Their Interpretational Pitfalls
inferredcites →https://doi.org/10.3389/fnsys.2015.00189openalex-snapshot
Assessing Granger Causality in Electrophysiological Data: Removing the Adverse Effects of Common Signals via Bipolar Derivations

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inferred← citeshttps://doi.org/10.1523/eneuro.0329-17.2018openalex-snapshot
Isoflurane Impairs Low-Frequency Feedback but Leaves High-Frequency Feedforward Connectivity Intact in the Fly Brain
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