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Unique ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit

https://doi.org/10.1101/190033

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Physiological concentrations of purines and pyrimidines

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Oxygen cleavage with manganese and iron in ribonucleotide reductase from Chlamydia trachomatis

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Assembly of nonheme Mn/Fe active sites in heterodinuclear metalloproteins

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Role of effector binding in allosteric control of ribonucleoside diphosphate reductase

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The Structural Basis for the Allosteric Regulation of Ribonucleotide Reductase

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Ribonucleotide reductases: Substrate specificity by allostery

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Allostery in Disease and in Drug Discovery

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The changing landscape of protein allostery

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Structural Mechanism of Allosteric Activity Regulation in a Ribonucleotide Reductase with Double ATP Cones

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Complete analysis of cellular nucleotides by two-dimensional thin layer chromatography.

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Binding of allosteric effectors to ribonucleotide reductase protein R1: reduction of active-site cysteines promotes substrate binding

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Macromolecule Analysis Based on Electrophoretic Mobility in Air: Globular Proteins

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Allosteric Inhibition of Human Ribonucleotide Reductase by dATP Entails the Stabilization of a Hexamer

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A Comprehensive Model for the Allosteric Regulation of Mammalian Ribonucleotide Reductase. Functional Consequences of ATP- and dATP-Induced Oligomerization of the Large Subunit

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Electronic structure of dimanganese(II,III) and dimanganese(III,IV) complexes and dimanganese catalase enzyme: a general EPR spectral simulation approach

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Mechanism of Assembly of the Dimanganese-Tyrosyl Radical Cofactor of Class Ib Ribonucleotide Reductase: Enzymatic Generation of Superoxide Is Required for Tyrosine Oxidation via a Mn(III)Mn(IV) Intermediate

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Ecology of marine Bacteroidetes: a comparative genomics approach

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Structural basis for allosteric regulation of human ribonucleotide reductase by nucleotide-induced oligomerization

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Structural mechanism of allosteric substrate specificity regulation in a ribonucleotide reductase

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Metallation and mismetallation of iron and manganese proteins in vitro and in vivo: the class I ribonucleotide reductases as a case study

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Clofarabine 5′-di and -triphosphates inhibit human ribonucleotide reductase by altering the quaternary structure of its large subunit

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Structural interconversions modulate activity of Escherichia coli ribonucleotide reductase

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The Anaerobic (Class III) Ribonucleotide Reductase fromLactococcus lactis

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Allosteric Regulation of the Class III Anaerobic Ribonucleotide Reductase from Bacteriophage T4

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A Rare Combination of Ribonucleotide Reductases in the Social Amoeba Dictyostelium discoideum

inferredcites →https://doi.org/10.1074/jbc.m115.649624openalex-snapshot

Diversity in Overall Activity Regulation of Ribonucleotide Reductase

inferredcites →https://doi.org/10.1074/jbc.m601794200openalex-snapshot

Ribonucleotide Reductase Modularity

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Enzymatically Active Mammalian Ribonucleotide Reductase Exists Primarily as an α6β2 Octamer

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Oligomerization Status Directs Overall Activity Regulation of the Escherichia coli Class Ia Ribonucleotide Reductase

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Choosing the Right Metal: Case Studies of Class I Ribonucleotide Reductases

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Mechanisms of mutagenesis in vivo due to imbalanced dNTP pools

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Genome-wide analysis of the specificity and mechanisms of replication infidelity driven by imbalanced dNTP pools

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Leeuwenhoekiella blandensis sp. nov., a genome-sequenced marine member of the family Flavobacteriaceae

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ProbCons: Probabilistic consistency-based multiple sequence alignment

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Phaser crystallographic software

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CHAINSAW: a program for mutating pdb files used as templates in molecular replacement

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The Buccaneer software for automated model building. 1. Tracing protein chains

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MolProbity : all-atom structure validation for macromolecular crystallography

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XDS

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Features and development of Coot

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Overview of the CCP 4 suite and current developments

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How good are my data and what is the resolution?

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Refinement of Macromolecular Structures by the Maximum-Likelihood Method

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Cooperative and allosterically controlled nucleotide binding regulates the DNA binding activity of NrdR

inferredcites →https://doi.org/10.1126/science.1098419openalex-snapshot

The Radical Site in Chlamydial Ribonucleotide Reductase Defines a New R2 Subclass

inferredcites →https://doi.org/10.1128/jb.00903-06openalex-snapshot

The Streptomyces NrdR Transcriptional Regulator Is a Zn Ribbon/ATP Cone Protein That Binds to the Promoter Regions of Class Ia and Class II Ribonucleotide Reductase Operons

inferredcites →https://doi.org/10.1128/jb.01020-07openalex-snapshot

Characterization of Nucleotide Pools as a Function of Physiological State in Escherichia coli

inferredcites →https://doi.org/10.1146/annurev.bi.48.070179.001025openalex-snapshot

Reduction of Ribonucleotides

inferredcites →https://doi.org/10.1146/annurev.biochem.75.103004.142443openalex-snapshot

Ribonucleotide Reductases

inferredcites →https://doi.org/10.1371/journal.pcbi.1002195openalex-snapshot

Accelerated Profile HMM Searches

inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

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inferredcites →https://doi.org/10.3389/fcimb.2014.00052openalex-snapshot

Ribonucleotide reductases: essential enzymes for bacterial life

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A Critical Balance: dNTPs and the Maintenance of Genome Stability

inferredcites →https://doi.org/10.3390/life5010604openalex-snapshot

The Origin and Evolution of Ribonucleotide Reduction

inferredcites →https://doi.org/10.7554/elife.07141openalex-snapshot

Molecular basis for allosteric specificity regulation in class Ia ribonucleotide reductase from Escherichia coli

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VSEARCH: a versatile open source tool for metagenomics

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