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ABLE: an Activity-Based Level Set Segmentation Algorithm for Two-Photon Calcium Imaging Data

https://doi.org/10.1101/190348

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/jcph.1996.0167openalex-snapshot

A Variational Level Set Approach to Multiphase Motion

inferredcites →https://doi.org/10.1007/978-0-387-44588-5openalex-snapshot

Mathematical Problems in Image Processing

inferredcites →https://doi.org/10.1007/b98879openalex-snapshot

Level Set Methods and Dynamic Implicit Surfaces

inferredcites →https://doi.org/10.1007/bf01385685openalex-snapshot

A geometric model for active contours in image processing

inferredcites →https://doi.org/10.1016/0021-9991(88)90002-2openalex-snapshot

Fronts propagating with curvature-dependent speed: Algorithms based on Hamilton-Jacobi formulations

inferredcites →https://doi.org/10.1016/j.conb.2015.03.016openalex-snapshot

Comprehensive imaging of cortical networks

inferredcites →https://doi.org/10.1016/j.irbm.2013.04.002openalex-snapshot

Spline-based framework for interactive segmentation in biomedical imaging

inferredcites →https://doi.org/10.1016/j.neunet.2014.03.007openalex-snapshot

Detecting cells using non-negative matrix factorization on calcium imaging data

inferredcites →https://doi.org/10.1016/j.neuron.2009.08.009openalex-snapshot

Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data

inferredcites →https://doi.org/10.1016/j.neuron.2010.08.002openalex-snapshot

Broadly Tuned Response Properties of Diverse Inhibitory Neuron Subtypes in Mouse Visual Cortex

inferredcites →https://doi.org/10.1016/j.neuron.2013.10.020openalex-snapshot

Flow of Cortical Activity Underlying a Tactile Decision in Mice

inferredcites →https://doi.org/10.1016/j.neuron.2015.03.027openalex-snapshot

A Cellular Resolution Map of Barrel Cortex Activity during Tactile Behavior

inferredcites →https://doi.org/10.1016/j.neuron.2015.11.037openalex-snapshot

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data

inferredcites →https://doi.org/10.1038/nature03274openalex-snapshot

Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex

inferredcites →https://doi.org/10.1038/nature12354openalex-snapshot

Ultrasensitive fluorescent proteins for imaging neuronal activity

inferredcites →https://doi.org/10.1038/nbt.3594openalex-snapshot

Wide field-of-view, multi-region, two-photon imaging of neuronal activity in the mammalian brain

inferredcites →https://doi.org/10.1038/nmeth.2434openalex-snapshot

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

inferredcites →https://doi.org/10.1038/nn.2620openalex-snapshot

Parallel processing of visual space by neighboring neurons in mouse visual cortex

inferredcites →https://doi.org/10.1038/nn.3867openalex-snapshot

Visualizing mammalian brain area interactions by dual-axis two-photon calcium imaging

inferredcites →https://doi.org/10.1088/1741-2560/10/4/046017openalex-snapshot

A finite rate of innovation algorithm for fast and accurate spike detection from two-photon calcium imaging

inferredcites →https://doi.org/10.1101/061507openalex-snapshot

Suite2p: beyond 10,000 neurons with standard two-photon microscopy

inferredcites →https://doi.org/10.1109/34.368173openalex-snapshot

Shape modeling with front propagation: a level set approach

inferredcites →https://doi.org/10.1109/83.902291openalex-snapshot

Active contours without edges

inferredcites →https://doi.org/10.1109/isbi.2016.7493357openalex-snapshot

An extension of the FRI framework for calcium transient detection

inferredcites →https://doi.org/10.1109/msp.2014.2344552openalex-snapshot

Snakes on a Plane: A perfect snap for bioimage analysis

inferredcites →https://doi.org/10.1109/tip.2005.852790openalex-snapshot

Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces

inferredcites →https://doi.org/10.1109/tip.2010.2069690openalex-snapshot

Distance Regularized Level Set Evolution and Its Application to Image Segmentation

inferredcites →https://doi.org/10.1109/tpami.2005.214openalex-snapshot

Coupled parametric active contours

inferredcites →https://doi.org/10.1152/jn.00484.2010openalex-snapshot

Automatic Identification of Fluorescently Labeled Brain Cells for Rapid Functional Imaging

inferredcites →https://doi.org/10.1523/jneurosci.4919-08.2009openalex-snapshot

Spatial Pattern Coding of Sensory Information by Climbing Fiber-Evoked Calcium Signals in Networks of Neighboring Cerebellar Purkinje Cells

inferredcites →https://doi.org/10.3389/fninf.2014.00080openalex-snapshot

SIMA: Python software for analysis of dynamic fluorescence imaging data

inferredcites →https://doi.org/10.48550/arxiv.1606.07372openalex-snapshot

Automatic Neuron Detection in Calcium Imaging Data Using Convolutional Networks

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.jneumeth.2021.109173openalex-snapshot

Neural anatomy and optical microscopy (NAOMi) simulation for evaluating calcium imaging methods

inferred← citeshttps://doi.org/10.1016/j.neures.2021.12.001openalex-snapshot

Imaging data analysis using non-negative matrix factorization

inferred← citeshttps://doi.org/10.1101/180273openalex-snapshot

cytoNet: Spatiotemporal Network Analysis of Cell Communities

inferred← citeshttps://doi.org/10.1101/313981openalex-snapshot

Automated cellular structure extraction in biological images with applications to calcium imaging data

inferred← citeshttps://doi.org/10.1101/334706openalex-snapshot

Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data

inferred← citeshttps://doi.org/10.1109/tip.2022.3171414openalex-snapshot

GraFT: Graph Filtered Temporal Dictionary Learning for Functional Neural Imaging

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1009846openalex-snapshot

cytoNet: Spatiotemporal network analysis of cell communities

inferred← citeshttps://doi.org/10.3389/fncel.2021.618658openalex-snapshot

Place Cells in Head-Fixed Mice Navigating a Floating Real-World Environment

inferred← citeshttps://doi.org/10.3390/app12146876openalex-snapshot

Computational Methods for Neuron Segmentation in Two-Photon Calcium Imaging Data: A Survey

inferred← citeshttps://doi.org/10.48550/arxiv.1807.06203openalex-snapshot

Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data

inferred← citeshttps://doi.org/10.7554/elife.38173openalex-snapshot

CaImAn an open source tool for scalable calcium imaging data analysis

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