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Symbiodinium functional diversity and clade specificity under global change stressors

https://doi.org/10.1101/190413

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Influence of thermal history on the response of Montastraea annularis to short-term temperature exposure

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Multi-year, seasonal genotypic surveys of coral-algal symbioses reveal prevalent stability or post-bleaching reversion

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The physiological and molecular responses of larvae from the reef-building coral Pocillopora damicornis exposed to near-future increases in temperature and pCO2

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The endosymbiotic dinoflagellates (Symbiodinium sp.) of corals are parasites and mutualists

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Carbon translocation from symbiont to host depends on irradiance and food availability in the tropical coral Stylophora pistillata

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Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure

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Differential xanthophyll cycling and photochemical activity in symbiotic dinoflagellates in multiple locations of three species of Caribbean coral

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Photographic assessment of coral chlorophyll contents: Implications for ecophysiological studies and coral monitoring

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The evolutionary history of Symbiodinium and scleractinian hosts—Symbiosis, diversity, and the effect of climate change

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Genetic Diversity of Symbiotic Dinoflagellates in the Genus Symbiodinium

inferredcites →https://doi.org/10.1016/j.resmic.2011.04.006openalex-snapshot

Genomic understanding of dinoflagellates

inferredcites →https://doi.org/10.1016/j.ympev.2005.04.028openalex-snapshot

Molecular phylogeny, evolutionary rates, and divergence timing of the symbiotic dinoflagellate genus Symbiodinium

inferredcites →https://doi.org/10.1016/j.ympev.2010.03.040openalex-snapshot

A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i

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Reef corals bleach to survive change

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Thermal adaptation in reef coral symbionts

inferredcites →https://doi.org/10.1038/ismej.2014.182openalex-snapshot

Unfolding the secrets of coral–algal symbiosis

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Heterotrophic plasticity and resilience in bleached corals

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Global warming and recurrent mass bleaching of corals

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

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Coral thermal tolerance shaped by local adaptation of photosymbionts

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Decline of forereef corals in response to recent warming linked to history of thermal exposure

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Fast gapped-read alignment with Bowtie 2

inferredcites →https://doi.org/10.1038/nrg3068openalex-snapshot

Next-generation transcriptome assembly

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Changes in microbial communities, photosynthesis and calcification of the coral Acropora gemmifera in response to ocean acidification

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Coral symbioses under prolonged environmental change: living near tolerance range limits

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Climate change, coral bleaching and the future of the world's coral reefs

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Spliced leader RNA trans-splicing in dinoflagellates

inferredcites →https://doi.org/10.1073/pnas.0801328105openalex-snapshot

Functional diversity in coral–dinoflagellate symbiosis

inferredcites →https://doi.org/10.1073/pnas.0804478105openalex-snapshot

Ocean acidification causes bleaching and productivity loss in coral reef builders

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Different thermal sensitivity of the repair of photodamaged photosynthetic machinery in cultured Symbiodinium species

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Imaging intracellular pH in a reef coral and symbiotic anemone

inferredcites →https://doi.org/10.1073/pnas.1007246107openalex-snapshot

Spliced leader–based metatranscriptomic analyses lead to recognition of hidden genomic features in dinoflagellates

inferredcites →https://doi.org/10.1073/pnas.1210224110openalex-snapshot

Genomic basis for coral resilience to climate change

inferredcites →https://doi.org/10.1073/pnas.1413483112openalex-snapshot

Coral host cells acidify symbiotic algal microenvironment to promote photosynthesis

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Microbial invasion of the Caribbean by an Indo-Pacific coral zooxanthella

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Ancestral genetic diversity associated with the rapid spread of stress-tolerant coral symbionts in response to Holocene climate change

inferredcites →https://doi.org/10.1073/pnas.89.21.10302openalex-snapshot

Photosynthetic response to elevated temperature in the symbiotic dinoflagellate Symbiodinium microadriaticum in culture.

inferredcites →https://doi.org/10.1073/pnas.96.14.8007openalex-snapshot

Damage to photosystem II in symbiotic dinoflagellates: A determinant of coral bleaching

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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

inferredcites →https://doi.org/10.1093/gbe/evw019openalex-snapshot

Gene Expression Variation Resolves Species and Individual Strains among Coral-Associated Dinoflagellates within the Genus Symbiodinium

inferredcites →https://doi.org/10.1093/jxb/ert208openalex-snapshot

Chlorophyll fluorescence analysis: a guide to good practice and understanding some new applications

inferredcites →https://doi.org/10.1093/molbev/msu107openalex-snapshot

Lineage-Specific Transcriptional Profiles of Symbiodinium spp. Unaltered by Heat Stress in a Coral Host

inferredcites →https://doi.org/10.1093/molbev/msw119openalex-snapshot

Sex, Scavengers, and Chaperones: Transcriptome Secrets of DivergentSymbiodiniumThermal Tolerances

inferredcites →https://doi.org/10.1093/molbev/msw201openalex-snapshot

Sex, Scavengers, and Chaperones: Transcriptome Secrets of Divergent Symbiodinium Thermal Tolerances

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UniProt: a hub for protein information

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The symbiotic interface in an alga—invertebrate symbiosis

inferredcites →https://doi.org/10.1098/rspb.2004.2757openalex-snapshot

Different algal symbionts explain the vertical distribution of dominant reef corals in the eastern Pacific

inferredcites →https://doi.org/10.1098/rspb.2006.3567openalex-snapshot

The role of zooxanthellae in the thermal tolerance of corals: a ‘nugget of hope’ for coral reefs in an era of climate change

inferredcites →https://doi.org/10.1098/rspb.2008.0069openalex-snapshot

A community change in the algal endosymbionts of a scleractinian coral following a natural bleaching event: field evidence of acclimatization

inferredcites →https://doi.org/10.1098/rspb.2014.1725openalex-snapshot

Investigating the causes and consequences of symbiont shuffling in a multi-partner reef coral symbiosis under environmental change

inferredcites →https://doi.org/10.1098/rspb.2014.1856openalex-snapshot

The reef-building coral Siderastrea siderea exhibits parabolic responses to ocean acidification and warming

inferredcites →https://doi.org/10.1101/037994openalex-snapshot

Ecological factors rather than barriers to dispersal shape genetic structure of algal symbionts in horizontally-transmitting corals

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Climate change in the oceans: evolutionary versus phenotypically plastic responses of marine animals and plants

inferredcites →https://doi.org/10.1111/evo.12270openalex-snapshot

HOST-SPECIALIST LINEAGES DOMINATE THE ADAPTIVE RADIATION OF REEF CORAL ENDOSYMBIONTS

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Sensitivity of coral calcification to ocean acidification: a meta‐analysis

inferredcites →https://doi.org/10.1111/gcb.12706openalex-snapshot

Change in algal symbiont communities after bleaching, not prior heat exposure, increases heat tolerance of reef corals

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Rapid thermal adaptation in photosymbionts of reef‐building corals

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The effect of ocean acidification on symbiont photorespiration and productivity in Acropora formosa

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Disaster taxa in microbially mediated metazoans: how endosymbionts and environmental catastrophes influence the adaptive capacity of reef corals

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Coral host transcriptomic states are correlated withSymbiodiniumgenotypes

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Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA-Seq procedure

inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05357.xopenalex-snapshot

Genotypic diversity and spatial–temporal distribution of Symbiodinium clones in an abundant reef coral

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05554.xopenalex-snapshot

Whole Transcriptome Analysis of the Coral Acropora millepora Reveals Complex Responses to CO2‐driven Acidification during the Initiation of Calcification

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The effects of elevated temperature on the photosynthetic efficiency of zooxanthellae in hospite from four different species of reef coral: a novel approach

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Metabolic interactions between algal symbionts and invertebrate hosts

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SYMBIODINIUM MICROADRIATICUM FREUDENTHAL, S. GOREAUII SP. NOV., S. KAWAGUTII SP. NOV. AND S. PILOSUM SP. NOV.: GYMNODINIOID DINOFLAGELLATE SYMBIONTS OF MARINE INVERTEBRATES 1

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DIFFERENTIAL IMPACTS OF PHOTOACCLIMATION AND THERMAL STRESS ON THE PHOTOBIOLOGY OF FOUR DIFFERENT PHYLOTYPES OF SYMBIODINIUM (PYRRHOPHYTA) 1

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PHOTOSYNTHESIS AND PRODUCTION OF HYDROGEN PEROXIDE BY SYMBIODINIUM (PYRRHOPHYTA) PHYLOTYPES WITH DIFFERENT THERMAL TOLERANCES1

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GeoSymbio: a hybrid, cloud‐based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium –host symbioses

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Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

inferredcites →https://doi.org/10.1111/mec.13125openalex-snapshot

The role of transcriptome resilience in resistance of corals to bleaching

inferredcites →https://doi.org/10.1111/mec.14055openalex-snapshot

Population genetics of reef coral endosymbionts (Symbiodinium, Dinophyceae)

inferredcites →https://doi.org/10.1111/nph.12903openalex-snapshot

PSI Mehler reaction is the main alternative photosynthetic electron pathway in Symbiodinium sp., symbiotic dinoflagellates of cnidarians

inferredcites →https://doi.org/10.1126/science.1152509openalex-snapshot

Coral Reefs Under Rapid Climate Change and Ocean Acidification

inferredcites →https://doi.org/10.1126/science.1189930openalex-snapshot

The Impact of Climate Change on the World’s Marine Ecosystems

inferredcites →https://doi.org/10.1126/science.1204794openalex-snapshot

Projecting Coral Reef Futures Under Global Warming and Ocean Acidification

inferredcites →https://doi.org/10.1126/science.1261224openalex-snapshot

Genomic determinants of coral heat tolerance across latitudes

inferredcites →https://doi.org/10.1126/science.284.5411.118openalex-snapshot

Geochemical Consequences of Increased Atmospheric Carbon Dioxide on Coral Reefs

inferredcites →https://doi.org/10.1126/science.aad0408openalex-snapshot

The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis

inferredcites →https://doi.org/10.1146/annurev.ecolsys.34.011802.132417openalex-snapshot

Flexibility and Specificity in Coral-Algal Symbiosis: Diversity, Ecology, and Biogeography of Symbiodinium

inferredcites →https://doi.org/10.1155/2011/730715openalex-snapshot

Clade D Symbiodinium in Scleractinian Corals: A “Nugget” of Hope, a Selfish Opportunist, an Ominous Sign, or All of the Above?

inferredcites →https://doi.org/10.1186/1471-2164-14-704openalex-snapshot

Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals

inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

inferredcites →https://doi.org/10.1242/jeb.009597openalex-snapshot

Cellular mechanisms of Cnidarian bleaching: stress causes the collapse of symbiosis

inferredcites →https://doi.org/10.1242/jeb.153049openalex-snapshot

Reactive oxygen species (ROS) and dimethylated sulphur compounds in coral explants under acute thermal stress

inferredcites →https://doi.org/10.1371/journal.pgen.1006619openalex-snapshot

Condition-specific RNA editing in the coral symbiont Symbiodinium microadriaticum

inferredcites →https://doi.org/10.1371/journal.pone.0010437openalex-snapshot

Potential Costs of Acclimatization to a Warmer Climate: Growth of a Reef Coral with Heat Tolerant vs. Sensitive Symbiont Types

inferredcites →https://doi.org/10.1371/journal.pone.0020392openalex-snapshot

Rapid Evolution of Coral Proteins Responsible for Interaction with the Environment

inferredcites →https://doi.org/10.1371/journal.pone.0026687openalex-snapshot

Differential Responses of the Coral Host and Their Algal Symbiont to Thermal Stress

inferredcites →https://doi.org/10.1371/journal.pone.0035269openalex-snapshot

Symbiodinium Transcriptomes: Genome Insights into the Dinoflagellate Symbionts of Reef-Building Corals

inferredcites →https://doi.org/10.1371/journal.pone.0050439openalex-snapshot

Transcriptional Response of Two Core Photosystem Genes in Symbiodinium spp. Exposed to Thermal Stress

inferredcites →https://doi.org/10.1371/journal.pone.0066347openalex-snapshot

Global Analysis of mRNA Half-Lives and de novo Transcription in a Dinoflagellate, Karenia brevis

inferredcites →https://doi.org/10.1371/journal.pone.0079208openalex-snapshot

Long-Range Dispersal and High-Latitude Environments Influence the Population Structure of a “Stress-Tolerant” Dinoflagellate Endosymbiont

inferredcites →https://doi.org/10.1371/journal.pone.0162098openalex-snapshot

Temperature Regimes Impact Coral Assemblages along Environmental Gradients on Lagoonal Reefs in Belize

inferredcites →https://doi.org/10.2307/1540172openalex-snapshot

ASSIMILATION OF PHOTOSYNTHETIC PRODUCTS OF ZOOXANTHELLAE BY A REEF CORAL

inferredcites →https://doi.org/10.2307/1543491openalex-snapshot

Molecular Genetic Evidence that Dinoflagellates Belonging to the GenusSymbiodiniumFreudenthal Are Haploid

inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot

vegan: Community Ecology Package

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.3354/meps08372openalex-snapshot

Transcriptomic responses to heat stress and bleaching in the elkhorn coral Acropora palmata

inferredcites →https://doi.org/10.3354/meps08571openalex-snapshot

PSII photoinhibition and photorepair in Symbiodinium (Pyrrhophyta) differs between thermally tolerant and sensitive phylotypes

inferredcites →https://doi.org/10.3354/meps113163openalex-snapshot

Acclimation and adaptation to irradiance in symbiotic dinoflagellates. I. Responses of the photosynthetic unit to changes in photon flux density

inferredcites →https://doi.org/10.3354/meps132287openalex-snapshot

Acclimation of phytoplankton to UV-B radiation:oxidative stress and photoinhibition of photosynthesis are not prevented by UV-absorbing compounds in the dinoflagellate Prorocentrum micans

inferredcites →https://doi.org/10.3389/fmars.2016.00112openalex-snapshot

Thermal and pCO2 Stress Elicit Divergent Transcriptomic Responses in a Resilient Coral

inferredcites →https://doi.org/10.3389/fmicb.2014.00422openalex-snapshot

The engine of the reef: photobiology of the coral–algal symbiosis

inferredcites →https://doi.org/10.3389/fpls.2017.00271openalex-snapshot

Transcriptomic Analysis of Thermally Stressed Symbiodinium Reveals Differential Expression of Stress and Metabolism Genes

inferredcites →https://doi.org/10.4319/lo.2011.56.3.0927openalex-snapshot

Differential effects of ocean acidification on growth and photosynthesis among phylotypes of Symbiodinium (Dinophyceae)

inferredcites →https://doi.org/10.4319/lo.2014.59.3.0788openalex-snapshot

Community dynamics and physiology of Symbiodinium spp. before, during, and after a coral bleaching event

inferredcites →https://doi.org/10.4319/lom.2010.8.0107openalex-snapshot

Comparison of in situ and satellite‐derived (MODIS‐Aqua/Terra) methods for assessing temperatures on coral reefs

inferredcites →https://doi.org/10.5194/bg-10-3997-2013openalex-snapshot

Photosynthate translocation increases in response to low seawater pH in a coral–dinoflagellate symbiosis

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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