On the public citation graph

MuClone: Somatic mutation detection and classification through probabilistic integration of clonal population structure

https://doi.org/10.1101/191759

0 signed · 28 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.cell.2012.04.023openalex-snapshot

The Life History of 21 Breast Cancers

inferredcites →https://doi.org/10.1016/j.cell.2012.08.024openalex-snapshot

Genomic Landscape of Non-Small Cell Lung Cancer in Smokers and Never-Smokers

inferredcites →https://doi.org/10.1038/nature08489openalex-snapshot

Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution

inferredcites →https://doi.org/10.1038/nature09515openalex-snapshot

Distant metastasis occurs late during the genetic evolution of pancreatic cancer

inferredcites →https://doi.org/10.1038/nature13952openalex-snapshot

Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution

inferredcites →https://doi.org/10.1038/nbt.2514openalex-snapshot

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

inferredcites →https://doi.org/10.1038/ng.3573openalex-snapshot

Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer

inferredcites →https://doi.org/10.1038/nmeth.2883openalex-snapshot

PyClone: statistical inference of clonal population structure in cancer

inferredcites →https://doi.org/10.1056/nejmoa1113205openalex-snapshot

Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing

inferredcites →https://doi.org/10.1056/nejmoa1616288openalex-snapshot

Tracking the Evolution of Non–Small-Cell Lung Cancer

inferredcites →https://doi.org/10.1089/cmb.2013.0106openalex-snapshot

Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery

inferredcites →https://doi.org/10.1093/bioinformatics/btp373openalex-snapshot

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

inferredcites →https://doi.org/10.1093/bioinformatics/btq040openalex-snapshot

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors

inferredcites →https://doi.org/10.1093/bioinformatics/btr629openalex-snapshot

Feature-based classifiers for somatic mutation detection in tumour–normal paired sequencing data

inferredcites →https://doi.org/10.1093/bioinformatics/bts053openalex-snapshot

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data

inferredcites →https://doi.org/10.1093/bioinformatics/bts271openalex-snapshot

Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs

inferredcites →https://doi.org/10.1093/bioinformatics/btu755openalex-snapshot

SNV-PPILP: refined SNV calling for tumor data using perfect phylogenies and ILP

inferredcites →https://doi.org/10.1093/nar/gkv135openalex-snapshot

multiSNV: a probabilistic approach for improving detection of somatic point mutations from multiple related tumour samples

inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

inferredcites →https://doi.org/10.1101/gr.180281.114openalex-snapshot

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

inferredcites →https://doi.org/10.1126/science.1253462openalex-snapshot

Spatial and temporal diversity in genomic instability processes defines lung cancer evolution

inferredcites →https://doi.org/10.1186/gb-2013-14-8-r90openalex-snapshot

Virmid: accurate detection of somatic mutations with sample impurity inference

inferredcites →https://doi.org/10.1186/s13059-014-0572-2openalex-snapshot

De novo assembly of bacterial transcriptomes from RNA-seq data

inferredcites →https://doi.org/10.1186/s13059-015-0592-6openalex-snapshot

BitPhylogeny: a probabilistic framework for reconstructing intra-tumor phylogenies

inferredcites →https://doi.org/10.1186/s13059-015-0602-8openalex-snapshot

PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors

inferredcites →https://doi.org/10.1186/s13059-015-0647-8openalex-snapshot

Fast and scalable inference of multi-sample cancer lineages

inferredcites →https://doi.org/10.1371/journal.pmed.1002197openalex-snapshot

Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/655605openalex-snapshot

Accuracy of somatic variant detection in multiregional tumor sequencing data

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.