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A feed-forward relay between Bicoid and Orthodenticle regulates the timing of embryonic patterning in Drosophila

https://doi.org/10.1101/198036

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Outgoing claims: the papers this work cites, builds on, or argues with.

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The role of localization of bicoid RNA in organizing the anterior pattern of the Drosophila embryo.

inferredcites →https://doi.org/10.1007/s10709-006-0031-4openalex-snapshot

Maternal expression increases the rate of bicoid evolution by relaxing selective constraint

inferredcites →https://doi.org/10.1016/0092-8674(88)90182-1openalex-snapshot

A gradient of bicoid protein in Drosophila embryos

inferredcites →https://doi.org/10.1016/0092-8674(89)90038-xopenalex-snapshot

A single amino acid can determine the DNA binding specificity of homeodomain proteins

inferredcites →https://doi.org/10.1016/0092-8674(89)90062-7openalex-snapshot

The gradient morphogen bicoid is a concentration-dependent transcriptional activator

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From fly head to mammalian forebrain: the story of otd and Otx

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Analysis of Homeodomain Specificities Allows the Family-wide Prediction of Preferred Recognition Sites

inferredcites →https://doi.org/10.1016/j.cell.2008.05.024openalex-snapshot

Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences

inferredcites →https://doi.org/10.1016/j.cell.2008.06.030openalex-snapshot

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

inferredcites →https://doi.org/10.1016/j.cell.2011.02.017openalex-snapshot

Evolution of Gene Regulatory Networks Controlling Body Plan Development

inferredcites →https://doi.org/10.1016/j.cell.2011.10.053openalex-snapshot

Cofactor Binding Evokes Latent Differences in DNA Binding Specificity between Hox Proteins

inferredcites →https://doi.org/10.1016/j.cell.2012.03.018openalex-snapshot

A System of Repressor Gradients Spatially Organizes the Boundaries of Bicoid-Dependent Target Genes

inferredcites →https://doi.org/10.1016/j.cell.2014.11.041openalex-snapshot

Low Affinity Binding Site Clusters Confer Hox Specificity and Regulatory Robustness

inferredcites →https://doi.org/10.1016/j.cub.2005.09.046openalex-snapshot

Bicoid Determines Sharp and Precise Target Gene Expression in the Drosophila Embryo

inferredcites →https://doi.org/10.1016/s0092-8674(94)90622-xopenalex-snapshot

Synergy between the hunchback and bicoid morphogens is required for anterior patterning in Drosophila

inferredcites →https://doi.org/10.1038/324120a0openalex-snapshot

Organization of anterior pattern in the Drosophila embryo by the maternal gene bicoid

inferredcites →https://doi.org/10.1038/337138a0openalex-snapshot

The bicoid protein is a positive regulator of hunchback transcription in the early Drosophila embryo

inferredcites →https://doi.org/10.1038/346485a0openalex-snapshot

The orthodenticle gene is regulated by bicoid and torso and specifies Drosophila head development

inferredcites →https://doi.org/10.1038/nature01536openalex-snapshot

The genes orthodenticle and hunchback substitute for bicoid in the beetle Tribolium

inferredcites →https://doi.org/10.1038/nature04445openalex-snapshot

Localized maternal orthodenticle patterns anterior and posterior in the long germ wasp Nasonia

inferredcites →https://doi.org/10.1038/nbt1246openalex-snapshot

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

inferredcites →https://doi.org/10.1038/nprot.2008.195openalex-snapshot

Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors

inferredcites →https://doi.org/10.1038/nrg2102openalex-snapshot

Network motifs: theory and experimental approaches

inferredcites →https://doi.org/10.1038/nrg3053openalex-snapshot

The evolutionary origin of orphan genes

inferredcites →https://doi.org/10.1073/pnas.012292899openalex-snapshot

A single Hox3 gene with composite bicoid and zerknüllt expression characteristics in non-Cyclorrhaphan flies

inferredcites →https://doi.org/10.1073/pnas.0506462102openalex-snapshot

Bicoid cooperative DNA binding is critical for embryonic patterning in Drosophila

inferredcites →https://doi.org/10.1073/pnas.0807878105openalex-snapshot

Anterior-posterior positional information in the absence of a strong Bicoid gradient

inferredcites →https://doi.org/10.1073/pnas.1310430110openalex-snapshot

DNA-binding specificity changes in the evolution of forkhead transcription factors

inferredcites →https://doi.org/10.1073/pnas.1605085113openalex-snapshot

Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers

inferredcites →https://doi.org/10.1073/pnas.96.7.3786openalex-snapshot

The anterior determinant bicoid of Drosophila is a derived Hox class 3 gene

inferredcites →https://doi.org/10.1093/bioinformatics/btr189openalex-snapshot

MEME-ChIP: motif analysis of large DNA datasets

inferredcites →https://doi.org/10.1093/molbev/mst086openalex-snapshot

Subfunctionalization via Adaptive Evolution Influenced by Genomic Context: The Case of Histone Chaperones ASF1a and ASF1b

inferredcites →https://doi.org/10.1093/nar/gkn048openalex-snapshot

A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system

inferredcites →https://doi.org/10.1093/nar/gkp335openalex-snapshot

MEME SUITE: tools for motif discovery and searching

inferredcites →https://doi.org/10.1098/rstb.2007.2244openalex-snapshot

The evolution of developmental gene networks: lessons from comparative studies on holometabolous insects

inferredcites →https://doi.org/10.1098/rstb.2013.0018openalex-snapshot

Low-affinity transcription factor binding sites shape morphogen responses and enhancer evolution

inferredcites →https://doi.org/10.1101/gad.1509607openalex-snapshot

Whole-genome ChIP–chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo

inferredcites →https://doi.org/10.1101/gad.1890410openalex-snapshot

Precise temporal control of the eye regulatory gene Pax6 via enhancer-binding site affinity

inferredcites →https://doi.org/10.1101/gad.234534.113openalex-snapshot

Impacts of the ubiquitous factor Zelda on Bicoid-dependent DNA binding and transcription in Drosophila

inferredcites →https://doi.org/10.1101/gad.4.9.1516openalex-snapshot

The orthodenticle gene encodes a novel homeo domain protein involved in the development of the Drosophila nervous system and ocellar visual structures.

inferredcites →https://doi.org/10.1101/gr.192542.115openalex-snapshot

Zelda overcomes the high intrinsic nucleosome barrier at enhancers during Drosophila zygotic genome activation

inferredcites →https://doi.org/10.1111/j.1365-2583.2009.00940.xopenalex-snapshot

Anterior development in the parthenogenetic and viviparous form of the pea aphid, Acyrthosiphon pisum : hunchback and orthodenticle expression

inferredcites →https://doi.org/10.1111/j.1365-2583.2009.00950.xopenalex-snapshot

Characteristics of the genome of Arsenophonus nasoniae , son‐killer bacterium of the wasp Nasonia

inferredcites →https://doi.org/10.1111/j.1525-142x.2005.05066.xopenalex-snapshot

Short and long germ segmentation: unanswered questions in the evolution of a developmental mode

inferredcites →https://doi.org/10.1126/science.1086185openalex-snapshot

Resurrecting the Ancestral Steroid Receptor: Ancient Origin of Estrogen Signaling

inferredcites →https://doi.org/10.1126/science.1099247openalex-snapshot

Multiplex Detection of RNA Expression in Drosophila Embryos

inferredcites →https://doi.org/10.1126/science.1683715openalex-snapshot

Regulation of a Segmentation Stripe by Overlapping Activators and Repressors in the Drosophila Embryo

inferredcites →https://doi.org/10.1186/1471-2148-6-106openalex-snapshot

Fast sequence evolution of Hox and Hox-derived genes in the genus Drosophila

inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot

Model-based Analysis of ChIP-Seq (MACS)

inferredcites →https://doi.org/10.1186/gb-2011-12-8-r83openalex-snapshot

Cistrome: an integrative platform for transcriptional regulation studies

inferredcites →https://doi.org/10.1242/dev.051300openalex-snapshot

The time to measure positional information: maternal Hunchback is required for the synchrony of the Bicoid transcriptional response at the onset of zygotic transcription

inferredcites →https://doi.org/10.1242/dev.077362openalex-snapshot

Molecular mechanism underlying the regulatory specificity of aDrosophilahomeodomain protein that specifies myoblast identity

inferredcites →https://doi.org/10.1242/dev.109.4.811openalex-snapshot

Autonomous determination of anterior structures in the early Drosophila embryo by the bicoid morphogen

inferredcites →https://doi.org/10.1371/journal.pbio.1000596openalex-snapshot

The Formation of the Bicoid Morphogen Gradient Requires Protein Movement from Anteriorly Localized mRNA

inferredcites →https://doi.org/10.1371/journal.pgen.0010057openalex-snapshot

Maternal Expression Relaxes Constraint on Innovation of the Anterior Determinant, bicoid

inferredcites →https://doi.org/10.1371/journal.pgen.1002339openalex-snapshot

Temporal Coordination of Gene Networks by Zelda in the Early Drosophila Embryo

inferredcites →https://doi.org/10.1385/1-59745-097-9:245openalex-snapshot

Protein Binding Microarrays (PBMs) for Rapid, High-Throughput Characterization of the Sequence Specificities of DNA Binding Proteins

inferredcites →https://doi.org/10.1387/ijdb.14756325openalex-snapshot

'De-evolution' of Drosophila toward a more generic mode of axis patterning

inferredcites →https://doi.org/10.1534/genetics.106.056945openalex-snapshot

Site-Specific Transformation of Drosophila via ϕC31 Integrase-Mediated Cassette Exchange

inferredcites →https://doi.org/10.1534/genetics.113.152710openalex-snapshot

Genome Engineering of Drosophila with the CRISPR RNA-Guided Cas9 Nuclease

inferredcites →https://doi.org/10.1534/genetics.113.160713openalex-snapshot

Highly Specific and Efficient CRISPR/Cas9-Catalyzed Homology-Directed Repair in Drosophila

inferredcites →https://doi.org/10.7554/elife.03737openalex-snapshot

Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition

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