On the public citation graph

Species tree disequilibrium positively misleads models of gene family evolution

https://doi.org/10.1101/2020.01.08.899518

0 signed · 36 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-4939-8736-8_3openalex-snapshot

Protocols for the Molecular Evolutionary Analysis of Membrane Protein Gene Duplicates

inferredcites →https://doi.org/10.1016/j.neuroscience.2006.08.063openalex-snapshot

Olfactory discrimination ability of CD-1 mice for a large array of enantiomers

inferredcites →https://doi.org/10.1016/j.tree.2014.04.001openalex-snapshot

Molecular evolution tracks macroevolutionary transitions in Cetacea

inferredcites →https://doi.org/10.1017/cbo9780511790942openalex-snapshot

Data Analysis Using Regression and Multilevel/Hierarchical Models

inferredcites →https://doi.org/10.1037//0735-7044.115.3.632openalex-snapshot

Enantioselectivity of odor perception in honeybees (Apis mellifera carnica).

inferredcites →https://doi.org/10.1038/221040a0openalex-snapshot

Gene Duplication and Nucleotide Substitution in Evolution

inferredcites →https://doi.org/10.1073/pnas.040580197openalex-snapshot

The olfactory receptor gene repertoire in primates and mouse: Evidence for reduction of the functional fraction in primates

inferredcites →https://doi.org/10.1073/pnas.1313759110openalex-snapshot

Neofunctionalization of young duplicate genes in Drosophila

inferredcites →https://doi.org/10.1073/pnas.94.15.7799openalex-snapshot

Evolution by the birth-and-death process in multigene families of the vertebrate immune system

inferredcites →https://doi.org/10.1089/106652700750050871openalex-snapshot

NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees

inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot

APE: Analyses of Phylogenetics and Evolution in R language

inferredcites →https://doi.org/10.1093/bioinformatics/btl097openalex-snapshot

CAFE: a computational tool for the study of gene family evolution

inferredcites →https://doi.org/10.1093/bioinformatics/btm538openalex-snapshot

GEIGER: investigating evolutionary radiations

inferredcites →https://doi.org/10.1093/chemse/bjs097openalex-snapshot

Olfactory Discrimination Ability of Asian Elephants (Elephas maximus) for Structurally Related Odorants

inferredcites →https://doi.org/10.1093/gbe/evw013openalex-snapshot

Contrasting patterns of evolutionary diversification in the olfactory repertoires of reptile and bird genomes

inferredcites →https://doi.org/10.1093/gbe/evw160openalex-snapshot

The Evolution of Olfactory Gene Families in Drosophila and the Genomic Basis of chemical-Ecological Adaptation in Drosophila suzukii

inferredcites →https://doi.org/10.1093/molbev/mss068openalex-snapshot

Extensive and Continuous Duplication Facilitates Rapid Evolution and Diversification of Gene Families

inferredcites →https://doi.org/10.1093/molbev/mst100openalex-snapshot

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

inferredcites →https://doi.org/10.1093/molbev/msu043openalex-snapshot

A Cluster of Olfactory Receptor Genes Linked to Frugivory in Bats

inferredcites →https://doi.org/10.1093/molbev/msw285openalex-snapshot

Rapid expansion of immune-related gene families in the house fly, Musca domestica

inferredcites →https://doi.org/10.1093/molbev/msy028openalex-snapshot

The Birth and Death of Olfactory Receptor Gene Families in Mammalian Niche Adaptation

inferredcites →https://doi.org/10.1093/sysbio/syu062openalex-snapshot

ModelOMatic: Fast and Automated Model Selection between RY, Nucleotide, Amino Acid, and Codon Substitution Models

inferredcites →https://doi.org/10.1093/sysbio/syu131openalex-snapshot

Model Inadequacy and Mistaken Inferences of Trait-Dependent Speciation

inferredcites →https://doi.org/10.1093/sysbio/syv066openalex-snapshot

A Robust Semi-Parametric Test for Detecting Trait-Dependent Diversification

inferredcites →https://doi.org/10.1093/sysbio/syw022openalex-snapshot

Detecting Hidden Diversification Shifts in Models of Trait-Dependent Speciation and Extinction

inferredcites →https://doi.org/10.1093/sysbio/syz069openalex-snapshot

A Bayesian Approach for Inferring the Impact of a Discrete Character on Rates of Continuous-Character Evolution in the Presence of Background-Rate Variation

inferredcites →https://doi.org/10.1111/2041-210x.12949openalex-snapshot

Continuous traits and speciation rates: Alternatives to state‐dependent diversification models

inferredcites →https://doi.org/10.1111/ele.12911openalex-snapshot

Eating down the food chain: generalism is not an evolutionary dead end for herbivores

inferredcites →https://doi.org/10.1111/j.0014-3820.2005.tb00932.xopenalex-snapshot

BATS, CLOCKS, AND ROCKS: DIVERSIFICATION PATTERNS IN CHIROPTERA

inferredcites →https://doi.org/10.1111/rssa.12378openalex-snapshot

Visualization in Bayesian Workflow

inferredcites →https://doi.org/10.1146/annurev.genet.39.073003.112240openalex-snapshot

Concerted and Birth-and-Death Evolution of Multigene Families

inferredcites →https://doi.org/10.1186/s12862-015-0315-3openalex-snapshot

Amino acid transporter expansions associated with the evolution of obligate endosymbiosis in sap-feeding insects (Hemiptera: sternorrhyncha)

inferredcites →https://doi.org/10.18637/jss.v033.i02openalex-snapshot

MCMC Methods for Multi-Response Generalized Linear Mixed Models: The MCMCglmm R Package

inferredcites →https://doi.org/10.33549/physiolres.932955openalex-snapshot

Olfactory Sensitivity in Mammalian Species

inferredcites →https://doi.org/10.7717/peerj.4873openalex-snapshot

MIPhy: identify and quantify rapidly evolving members of large gene families

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.70675/1b3ecccezb0ffz4b4bzb455z22be74952d90openalex-snapshot

Les points de vue des gènes orthologues et paralogues sur la génomique des rongeurs : phylogénomique et évolution des récepteurs olfactifs

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.