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Novel phylogeny of angiosperms inferred from whole-genome microsynteny analysis

https://doi.org/10.1101/2020.01.15.908376

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ajb2.1018openalex-snapshot

New prospects in the detection and comparative analysis of hybridization in the tree of life

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Tree Reconstruction via a Closure Operation on Partial Splits

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Working Group II

inferredcites →https://doi.org/10.1016/j.tig.2006.02.003openalex-snapshot

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Rare genomic changes as a tool for phylogenetics

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Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

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Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times

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Fast and sensitive protein alignment using DIAMOND

inferredcites →https://doi.org/10.1038/nrg.2017.26openalex-snapshot

The evolutionary significance of polyploidy

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Phylogenomics and the reconstruction of the tree of life

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Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes

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Nuclear genomes of two magnoliids

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One thousand plant transcriptomes and the phylogenomics of green plants

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Phylotranscriptomic analysis of the origin and early diversification of land plants

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Horizontal gene transfer is more frequent with increased heterotrophy and contributes to parasite adaptation

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Network-based microsynteny analysis identifies major differences and genomic outliers in mammalian and angiosperm genomes

inferredcites →https://doi.org/10.1073/pnas.89.14.6575openalex-snapshot

Gene order comparisons for phylogenetic inference: evolution of the mitochondrial genome.

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Transposons and genome evolution in plants

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An Approximately Unbiased Test of Phylogenetic Tree Selection

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Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies

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Scaling up accurate phylogenetic reconstruction from gene-order data

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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

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A space-time process model for the evolution of DNA sequences.

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Bayes Estimation of Species Divergence Times and Ancestral Population Sizes Using DNA Sequences From Multiple Loci

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Phylogenetic Reconstruction Based on Synteny Block and Gene Adjacencies

inferredcites →https://doi.org/10.1093/molbev/msaa139openalex-snapshot

ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy

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The Influence of Rate Heterogeneity among Sites on the Time Dependence of Molecular Rates

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/molbev/mst024openalex-snapshot

Ultrafast Approximation for Phylogenetic Bootstrap

inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

inferredcites →https://doi.org/10.1093/molbev/msx281openalex-snapshot

UFBoot2: Improving the Ultrafast Bootstrap Approximation

inferredcites →https://doi.org/10.1093/nar/gkr1293openalex-snapshot

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

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Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting

inferredcites →https://doi.org/10.1093/sysbio/syw030openalex-snapshot

Inconsistency of Species Tree Methods under Gene Flow

inferredcites →https://doi.org/10.1093/sysbio/syx063openalex-snapshot

Why Concatenation Fails Near the Anomaly Zone

inferredcites →https://doi.org/10.1101/197087openalex-snapshot

Biased gene retention in the face of massive nuclear introgression obscures species relationships

inferredcites →https://doi.org/10.1101/gr.123901.111openalex-snapshot

Unified modeling of gene duplication, loss, and coalescence using a locus tree

inferredcites →https://doi.org/10.1105/tpc.17.00312openalex-snapshot

Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation

inferredcites →https://doi.org/10.1111/boj.12385openalex-snapshot

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

inferredcites →https://doi.org/10.1111/j.1469-8137.2011.03972.xopenalex-snapshot

New grass phylogeny resolves deep evolutionary relationships and discovers C 4 origins

inferredcites →https://doi.org/10.1111/mec.13557openalex-snapshot

A genomic perspective on hybridization and speciation

inferredcites →https://doi.org/10.1111/nph.14503openalex-snapshot

Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets

inferredcites →https://doi.org/10.1126/science.1123061openalex-snapshot

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

inferredcites →https://doi.org/10.1126/science.1157704openalex-snapshot

A Phylogenomic Study of Birds Reveals Their Evolutionary History

inferredcites →https://doi.org/10.1126/science.1258524openalex-snapshot

Extensive introgression in a malaria vector species complex revealed by phylogenomics

inferredcites →https://doi.org/10.1126/science.284.5423.2124openalex-snapshot

Phylogenetic Classification and the Universal Tree

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Shifting the limits in wheat research and breeding using a fully annotated reference genome

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Genomic architecture and introgression shape a butterfly radiation

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Photorespiration and the Evolution of C4Photosynthesis

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Phylogenomics

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MRL and SuperFine+MRL: new supertree methods

inferredcites →https://doi.org/10.1186/s13059-019-1888-8openalex-snapshot

The Aquilegia genome reveals a hybrid origin of core eudicots

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Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough

inferredcites →https://doi.org/10.1371/journal.pgen.0020068openalex-snapshot

Discordance of Species Trees with Their Most Likely Gene Trees

inferredcites →https://doi.org/10.2307/1222480openalex-snapshot

Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene trees

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Combinatorics of Genome Rearrangements

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Cloning the barley nec3 disease lesion mimic mutant using complementation by sequencing

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The Litsea genome and the evolution of the laurel family

inferred← citeshttps://doi.org/10.1093/sysbio/syab035openalex-snapshot

A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life

inferred← citeshttps://doi.org/10.1111/1755-0998.13802openalex-snapshot

A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida)

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Next-generation fungal identification using target enrichment and Nanopore sequencing

inferred← citeshttps://doi.org/10.3389/fpls.2020.00719openalex-snapshot

Genomic Blocks in Aethionema arabicum Support Arabideae as Next Diverging Clade in Brassicaceae

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