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Metagenomic insights into the metabolism and ecologic functions of the widespread DPANN archaea from deep-sea hydrothermal vents
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen
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Adenylylsulfate reductase in some new sulfate-reducing bacteria
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Microbial alkyl- and aryl-sulfatases: mechanism, occurrence, screening and stereoselectivities
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Bacterial Exopolysaccharides from Extreme Marine Environments with Special Consideration of the Southern Ocean, Sea Ice, and Deep-Sea Hydrothermal Vents: A Review
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Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life
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Microorganisms and their roles in fundamental biogeochemical cycles
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Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling
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The newly proposed TACK and DPANN archaea detected in the production waters from a high-temperature petroleum reservoir
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BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
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Potential recycling of thaumarchaeotal lipids by DPANN Archaea in seasonally hypoxic surface marine sediments
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Diversity and distribution of Archaea in global estuarine ecosystems
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ATP Sulfurylases from Sulfate-Reducing Bacteria of the Genus Desulfovibrio. A Novel Metalloprotein Containing Cobalt and Zinc
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A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
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Metagenomic resolution of microbial functions in deep-sea hydrothermal plumes across the Eastern Lau Spreading Center
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Genomics-informed isolation and characterization of a symbiotic Nanoarchaeota system from a terrestrial geothermal environment
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Binning metagenomic contigs by coverage and composition
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A new view of the tree of life
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Metagenomics: DNA sequencing of environmental samples
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Mechanisms of gene flow in archaea
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Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota
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Expansive microbial metabolic versatility and biodiversity in dynamic Guaymas Basin hydrothermal sediments
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Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
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Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface
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Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations
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HydDB: A web tool for hydrogenase classification and analysis
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Enigmatic, ultrasmall, uncultivated Archaea
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Unexpected host dependency of Antarctic Nanohaloarchaeota
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Identification of Large PAHs in Bitumens from Deep-Sea Hydrothermal Vents
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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
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Identifying bacterial genes and endosymbiont DNA with Glimmer
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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
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MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
inferredcites →https://doi.org/10.1093/bioinformatics/btv638openalex-snapshot
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
inferredcites →https://doi.org/10.1093/femsle/fnz008openalex-snapshot
Genomic diversity, lifestyles and evolutionary origins of DPANN archaea
inferredcites →https://doi.org/10.1093/gigascience/gix120openalex-snapshot
SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
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The carbohydrate-active enzymes database (CAZy) in 2013
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Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
inferredcites →https://doi.org/10.1093/nar/gkx1134openalex-snapshot
The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database
inferredcites →https://doi.org/10.1093/nar/gky425openalex-snapshot
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
inferredcites →https://doi.org/10.1098/rsos.171570openalex-snapshot
Deepest and hottest hydrothermal activity in the Okinawa Trough: the Yokosuka site at Yaeyama Knoll
inferredcites →https://doi.org/10.1099/13500872-141-11-2897openalex-snapshot
Arylsulphatase from Alteromonas carrageenovora
inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
inferredcites →https://doi.org/10.1111/1758-2229.12370openalex-snapshot
High occurrence of Pacearchaeota and Woesearchaeota ( A rchaea superphylum DPANN ) in the surface waters of oligotrophic high‐altitude lakes
inferredcites →https://doi.org/10.1111/1758-2229.12538openalex-snapshot
The life sulfuric: microbial ecology of sulfur cycling in marine sediments
inferredcites →https://doi.org/10.1111/j.1462-2920.2010.02177.xopenalex-snapshot
Microbial diversity and biogeochemistry of the Guaymas Basin deep‐sea hydrothermal plume
inferredcites →https://doi.org/10.1126/science.1153213openalex-snapshot
The Microbial Engines That Drive Earth's Biogeochemical Cycles
inferredcites →https://doi.org/10.1126/science.aaf3883openalex-snapshot
Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life
inferredcites →https://doi.org/10.1128/jb.186.14.4556-4567.2004openalex-snapshot
Phenylphosphate Carboxylase: a New C-C Lyase Involved in Anaerobic Phenol Metabolism in Thauera aromatica
inferredcites →https://doi.org/10.1128/jb.186.23.8044-8057.2004openalex-snapshot
Phenylphosphate Synthase: a New Phosphotransferase Catalyzing the First Step in Anaerobic Phenol Metabolism in Thauera aromatica
inferredcites →https://doi.org/10.1128/jb.187.18.6258-6264.2005openalex-snapshot
Towards a Genome-Based Taxonomy for Prokaryotes
inferredcites →https://doi.org/10.1146/annurev-cellbio-101512-122326openalex-snapshot
Biogenesis, Secretion, and Intercellular Interactions of Exosomes and Other Extracellular Vesicles
inferredcites →https://doi.org/10.1146/annurev-micro-092412-155614openalex-snapshot
Archaea in Biogeochemical Cycles
inferredcites →https://doi.org/10.1186/s40168-017-0322-2openalex-snapshot
Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments
inferredcites →https://doi.org/10.1186/s40168-018-0488-2openalex-snapshot
Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages
inferredcites →https://doi.org/10.1186/s40168-018-0541-1openalex-snapshot
MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis
inferredcites →https://doi.org/10.1201/ebk1439821169-4openalex-snapshot
The Biology of Vestimentiferan Tubeworms
inferredcites →https://doi.org/10.3389/fmars.2017.00006openalex-snapshot
Marine Polysaccharide Sulfatases
inferredcites →https://doi.org/10.3389/fmicb.2018.00038openalex-snapshot
Microbial Community Structure and Function Indicate the Severity of Chromium Contamination of the Yellow River
inferredcites →https://doi.org/10.4014/jmb.1512.12036openalex-snapshot
Microbial Community Composition in the Marine Sediments of Jeju Island: Next-Generation Sequencing Surveys
inferredcites →https://doi.org/10.7717/peerj.243openalex-snapshot
PhyloSift: phylogenetic analysis of genomes and metagenomes
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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41598-024-61272-3openalex-snapshot
Insights into phage-bacteria interaction in cold seep Gigantidas platifrons through metagenomics and transcriptome analyses
inferred← citeshttps://doi.org/10.1111/jam.15711openalex-snapshot
Marine bacteria and omic approaches: A novel and potential repository for bioremediation assessment
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