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Factors Affecting Response to Recurrent Genomic Selection in Soybeans
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Estimating and Interpreting Heritability for Plant Breeding: An Update
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Single nucleotide polymorphisms facilitate distinctness‐uniformity‐stability testing of soybean cultivars for plant variety protection
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A nonlinear mixed‐effects modeling approach for ecological data: Using temporal dynamics of vegetation moisture as an example
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Modelling Plant Breeding Programs as Search Strategies on a Complex Response Surface
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Selection Methods in Plant Breeding
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Mixed-Effects Models in Sand S-PLUS
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Balancing selection response and rate of inbreeding by including genetic relationships in selection decisions
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Limits of artificial selection under unbalanced mating systems
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Application of support vector regression to genome-assisted prediction of quantitative traits
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Evaluation of genome-wide selection efficiency in maize nested association mapping populations
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Family-based association mapping in crop species
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Optimizing the allocation of resources for genomic selection in one breeding cycle
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Integrating environmental covariates and crop modeling into the genomic selection framework to predict genotype by environment interactions
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The impact of population structure on genomic prediction in stratified populations
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Genomic selection across multiple breeding cycles in applied bread wheat breeding
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Optimum breeding strategies using genomic selection for hybrid breeding in wheat, maize, rye, barley, rice and triticale
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Systematic design for trait introgression projects
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Optimal cross selection for long-term genetic gain in two-part programs with rapid recurrent genomic selection
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Genomic selection: prediction of accuracy and maximisation of long term response
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Genomic selection in soybean: accuracy and time gain in relation to phenotypic selection
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Breeding, Genetics, and Production of Soybeans
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Analysis of potential yields and yield gaps of rainfed soybean in India using CROPGRO-Soybean model
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Wheat quality improvement at CIMMYT and the use of genomic selection on it
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Engineering Quantitative Trait Variation for Crop Improvement by Genome Editing
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Factors affecting genomic selection revealed by empirical evidence in maize
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Genetic association mapping and genome organization of maize
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An optimization approach to gene stacking
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Insect-mediated cross-pollination in soybean [Glycine max (L.) Merrill]
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Yield gap analysis with local to global relevance—A review
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Animal-breeding schemes using genomic information need breeding plans designed to maximise long-term genetic gains
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Breeding schemes for the implementation of genomic selection in wheat ( Triticum spp . )
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Maize yield gaps caused by non-controllable, agronomic, and socioeconomic factors in a changing climate of Northeast China
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Does genomic selection have a future in plant breeding?
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Genetic Network Complexity Shapes Background-Dependent Phenotypic Expression
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A note on increasing the limit of selection through selection within families
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The effect of selection on genetic variability: a simulation study
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The effect of linkage on limits to artificial selection
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The hitch-hiking effect of a favourable gene
inferredcites →https://doi.org/10.1017/s0016672308009981openalex-snapshot
Increased accuracy of artificial selection by using the realized relationship matrix
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Radial basis function regression methods for predicting quantitative traits using SNP markers
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Semi-parametric genomic-enabled prediction of genetic values using reproducing kernel Hilbert spaces methods
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Seed-set evaluation of four male-sterile, female-fertile soybean lines using alfalfa leafcutting bees and honey bees as pollinators
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Population and quantitative genomic properties of the USDA soybean germplasm collection
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A simple regression method for mapping quantitative trait loci in line crosses using flanking markers
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The relationship between parental genetic or phenotypic divergence and progeny variation in the maize nested association mapping population
inferredcites →https://doi.org/10.1038/hdy.2013.16openalex-snapshot
Genomic prediction in CIMMYT maize and wheat breeding programs
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Accounting for genetic interactions improves modeling of individual quantitative trait phenotypes in yeast
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Genomic prediction unifies animal and plant breeding programs to form platforms for biological discovery
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Multi-objective optimized genomic breeding strategies for sustainable food improvement
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Rapid improvement of domestication traits in an orphan crop by genome editing
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The Hill–Robertson effect: evolutionary consequences of weak selection and linkage in finite populations
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Soybean natural cross-pollination rates under field conditions
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Mapping multiple QTL using linkage disequilibrium and linkage analysis information and multitrait data
inferredcites →https://doi.org/10.1073/pnas.0604379103openalex-snapshot
Impacts of genetic bottlenecks on soybean genome diversity
inferredcites →https://doi.org/10.1073/pnas.070430597openalex-snapshot
Genome organization in dicots: Genome duplication in Arabidopsis and synteny between soybean and Arabidopsis
inferredcites →https://doi.org/10.1073/pnas.77.1.546openalex-snapshot
Selection limits and strategies
inferredcites →https://doi.org/10.1079/9780851996011.0143openalex-snapshot
Complexity, quantitative traits and plant breeding: a role for simulation modelling in the genetic improvement of crops.
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Use of high-density marker genotyping for genetic improvement of livestock by genomic selection.
inferredcites →https://doi.org/10.1080/02648725.2016.1177377openalex-snapshot
Goals and hurdles for a successful implementation of genomic selection in breeding programme for selected annual and perennial crops
inferredcites →https://doi.org/10.1086/282718openalex-snapshot
The Effect of Selection on Genetic Variability
inferredcites →https://doi.org/10.1086/324471openalex-snapshot
Large Upward Bias in Estimation of Locus-Specific Effects from Genomewide Scans
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Will genomic selection be a practical method for plant breeding?
inferredcites →https://doi.org/10.1093/bfgp/elq001openalex-snapshot
Genomic selection in plant breeding: from theory to practice
inferredcites →https://doi.org/10.1093/bioinformatics/btn129openalex-snapshot
adegenet : a R package for the multivariate analysis of genetic markers
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adegenet 1.3-1 : new tools for the analysis of genome-wide SNP data
inferredcites →https://doi.org/10.1093/genetics/144.1.329openalex-snapshot
Genome Duplication in Soybean (Glycine subgenus soja)
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Prediction of Total Genetic Value Using Genome-Wide Dense Marker Maps
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The Selective Values of Alleles in a Molecular Network Model Are Context Dependent
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THE EFFECT OF LINKAGE ON DIRECTIONAL SELECTION
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ATTAINMENT OF QUASI LINKAGE EQUILIBRIUM WHEN GENE FREQUENCIES ARE CHANGING BY NATURAL SELECTION
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THE EVOLUTIONARY ADVANTAGE OF RECOMBINATION
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THE EVOLUTION OF ONE- AND TWO-LOCUS SYSTEMS
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SelAction: Software to Predict Selection Response and Rate of Inbreeding in Livestock Breeding Programs
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Enhancing genetic gain in the era of molecular breeding
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SoyBase, the USDA-ARS soybean genetics and genomics database
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The Pfam protein families database: towards a more sustainable future
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A theory of limits in artificial selection
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Efficient Gene Editing in Tomato in the First Generation Using the Clustered Regularly Interspaced Short Palindromic Repeats/CRISPR-Associated9 System
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GST is still a useful measure of genetic differentiation — a comment on Jost's D
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Selection on multiple QTL with control of gene diversity and inbreeding for long‐term benefit
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Long‐term genomic improvement – new challenges for population genetics
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Coalescence theory in livestock breeding
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hierfstat , a package for r to compute and test hierarchical F ‐statistics
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Genetic contributions and their optimization
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Genomic variance estimates: With or without disequilibrium covariances?
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Accelerating Improvement of Livestock with Genomic Selection
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Dynamics of long-term genomic selection
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Long-term response to genomic selection: effects of estimation method and reference population structure for different genetic architectures
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Allele frequency changes due to hitch-hiking in genomic selection programs
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Upweighting rare favourable alleles increases long-term genetic gain in genomic selection programs
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Optimization of genomic selection training populations with a genetic algorithm
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Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs
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Genomic prediction using subsampling
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Improving accuracy of genomic prediction by genetic architecture based priors in a Bayesian model
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The development and use of a molecular model for soybean maturity groups
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Mixed-Effects Models in S and S-PLUS
inferredcites →https://doi.org/10.1270/jsbbs.61.437openalex-snapshot
Evolutionary and comparative analyses of the soybean genome
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Genetic Gain Performance Metric Accelerates Agricultural Productivity
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Prediction of Complex Human Traits Using the Genomic Best Linear Unbiased Predictor
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The Power of QTL Mapping with RILs
inferredcites →https://doi.org/10.1371/journal.pone.0048862openalex-snapshot
Exploiting Genomic Knowledge in Optimising Molecular Breeding Programmes: Algorithms from Evolutionary Computing
inferredcites →https://doi.org/10.1371/journal.pone.0153945openalex-snapshot
Island-Model Genomic Selection for Long-Term Genetic Improvement of Autogamous Crops
inferredcites →https://doi.org/10.1525/9780520411586-034openalex-snapshot
Improvement by Means of Selection
inferredcites →https://doi.org/10.1534/g3.111.001297openalex-snapshot
Simulated Data for Genomic Selection and Genome-Wide Association Studies Using a Combination of Coalescent and Gene Drop Methods
inferredcites →https://doi.org/10.1534/g3.112.004911openalex-snapshot
Resource Allocation for Maximizing Prediction Accuracy and Genetic Gain of Genomic Selection in Plant Breeding: A Simulation Experiment
inferredcites →https://doi.org/10.1534/g3.114.010298openalex-snapshot
Parametric and Nonparametric Statistical Methods for Genomic Selection of Traits with Additive and Epistatic Genetic Architectures
inferredcites →https://doi.org/10.1534/g3.115.019000openalex-snapshot
Fingerprinting Soybean Germplasm and Its Utility in Genomic Research
inferredcites →https://doi.org/10.1534/g3.116.031443openalex-snapshot
Prospects of Genomic Prediction in the USDA Soybean Germplasm Collection: Historical Data Creates Robust Models for Enhancing Selection of Accessions
inferredcites →https://doi.org/10.1534/g3.116.032268openalex-snapshot
Assessing Predictive Properties of Genome-Wide Selection in Soybeans
inferredcites →https://doi.org/10.1534/g3.116.036251openalex-snapshot
Genomic Prediction with Pedigree and Genotype × Environment Interaction in Spring Wheat Grown in South and West Asia, North Africa, and Mexico
inferredcites →https://doi.org/10.1534/g3.116.036582openalex-snapshot
Persistency of Prediction Accuracy and Genetic Gain in Synthetic Populations Under Recurrent Genomic Selection
inferredcites →https://doi.org/10.1534/g3.117.044453openalex-snapshot
Application of Response Surface Methods To Determine Conditions for Optimal Genomic Prediction
inferredcites →https://doi.org/10.1534/g3.117.300300openalex-snapshot
Genome-Wide Analysis of Grain Yield Stability and Environmental Interactions in a Multiparental Soybean Population
inferredcites →https://doi.org/10.1534/g3.118.200091openalex-snapshot
Selection on Expected Maximum Haploid Breeding Values Can Increase Genetic Gain in Recurrent Genomic Selection
inferredcites →https://doi.org/10.1534/g3.118.200311openalex-snapshot
Optimising Genomic Selection in Wheat: Effect of Marker Density, Population Size and Population Structure on Prediction Accuracy
inferredcites →https://doi.org/10.1534/g3.118.200332openalex-snapshot
Genetic Architecture of Soybean Yield and Agronomic Traits
inferredcites →https://doi.org/10.1534/g3.118.200917openalex-snapshot
Genomic Selection for Yield and Seed Composition Traits Within an Applied Soybean Breeding Program
inferredcites →https://doi.org/10.1534/g3.118.200998openalex-snapshot
A Benchmarking Between Deep Learning, Support Vector Machine and Bayesian Threshold Best Linear Unbiased Prediction for Predicting Ordinal Traits in Plant Breeding
inferredcites →https://doi.org/10.1534/g3.119.400728openalex-snapshot
Efficient Estimation of Marker Effects in Plant Breeding
inferredcites →https://doi.org/10.1534/genetics.106.058586openalex-snapshot
The Hill–Robertson Effect and the Evolution of Recombination
inferredcites →https://doi.org/10.1534/genetics.107.074245openalex-snapshot
Genetic Design and Statistical Power of Nested Association Mapping in Maize
inferredcites →https://doi.org/10.1534/genetics.107.081190openalex-snapshot
The Impact of Genetic Relationship Information on Genome-Assisted Breeding Values
inferredcites →https://doi.org/10.1534/genetics.108.098277openalex-snapshot
Factors Affecting Accuracy From Genomic Selection in Populations Derived From Multiple Inbred Lines: A Barley Case Study
inferredcites →https://doi.org/10.1534/genetics.109.101501openalex-snapshot
Predicting Quantitative Traits With Regression Models for Dense Molecular Markers and Pedigree
inferredcites →https://doi.org/10.1534/genetics.109.104935openalex-snapshot
Reliability of Genomic Predictions Across Multiple Populations
inferredcites →https://doi.org/10.1534/genetics.110.115782openalex-snapshot
Nested Association Mapping for Identification of Functional Markers
inferredcites →https://doi.org/10.1534/genetics.112.143313openalex-snapshot
Whole-Genome Regression and Prediction Methods Applied to Plant and Animal Breeding
inferredcites →https://doi.org/10.1534/genetics.112.147983openalex-snapshot
Genomic Prediction in Animals and Plants: Simulation of Data, Validation, Reporting, and Benchmarking
inferredcites →https://doi.org/10.1534/genetics.113.150078openalex-snapshot
Genome-Wide Prediction of Traits with Different Genetic Architecture Through Efficient Variable Selection
inferredcites →https://doi.org/10.1534/genetics.114.164442openalex-snapshot
Genome-Wide Regression and Prediction with the BGLR Statistical Package
inferredcites →https://doi.org/10.1534/genetics.116.197095openalex-snapshot
The Predicted Cross Value for Genetic Introgression of Multiple Alleles
inferredcites →https://doi.org/10.1534/genetics.116.197103openalex-snapshot
Improving Response in Genomic Selection with a Population-Based Selection Strategy: Optimal Population Value Selection
inferredcites →https://doi.org/10.18637/jss.v066.i05openalex-snapshot
A Toolbox for Nonlinear Regression in R : The Package nlstools
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Hybridization of Crop Plants
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Estimates of Natural Crosspollination in Jackson Soybeans in Arkansas1
inferredcites →https://doi.org/10.2135/cropsci1979.0011183x001900060014xopenalex-snapshot
Genetic Improvement of Soybeans in the Midwest1
inferredcites →https://doi.org/10.2135/cropsci1994.0011183x003400020013xopenalex-snapshot
Natural Cross‐Pollination of Twelve Soybean Cultivars in Arkansas
inferredcites →https://doi.org/10.2135/cropsci2003.0489openalex-snapshot
Selection Dynamics and Limits under Additive × Additive Epistatic Gene Action
inferredcites →https://doi.org/10.2135/cropsci2006.11.0690openalex-snapshot
Prospects for Genomewide Selection for Quantitative Traits in Maize
inferredcites →https://doi.org/10.2135/cropsci2008.03.0131openalex-snapshot
Molecular Markers and Selection for Complex Traits in Plants: Learning from the Last 20 Years
inferredcites →https://doi.org/10.2135/cropsci2008.08.0512openalex-snapshot
Genomic Selection for Crop Improvement
inferredcites →https://doi.org/10.2135/cropsci2009.08.0456openalex-snapshot
Genetic Diversity and Agronomic Improvement of North American Soybean Germplasm
inferredcites →https://doi.org/10.2135/cropsci2011.05.0253openalex-snapshot
Genomic Selection Accuracy for Grain Quality Traits in Biparental Wheat Populations
inferredcites →https://doi.org/10.2135/cropsci2011.06.0297openalex-snapshot
Genomic Selection in Plant Breeding: A Comparison of Models
inferredcites →https://doi.org/10.2135/cropsci2011.09.0503openalex-snapshot
Potential and Optimization of Genomic Selection for Fusarium Head Blight Resistance in Six‐Row Barley
inferredcites →https://doi.org/10.2135/cropsci2012.03.0160openalex-snapshot
Genomic Selection using Multiple Populations
inferredcites →https://doi.org/10.2135/cropsci2013.03.0195openalex-snapshot
Evaluation of Genomic Selection Training Population Designs and Genotyping Strategies in Plant Breeding Programs Using Simulation
inferredcites →https://doi.org/10.2135/cropsci2014.01.0088openalex-snapshot
Genomewide Selection of Parental Inbreds: Classes of Loci and Virtual Biparental Populations
inferredcites →https://doi.org/10.2135/cropsci2014.03.0249openalex-snapshot
Perspectives for Genomic Selection Applications and Research in Plants
inferredcites →https://doi.org/10.2135/cropsci2014.07.0460openalex-snapshot
Genetic Gains in Grain Yield Through Genomic Selection in Eight Bi‐parental Maize Populations under Drought Stress
inferredcites →https://doi.org/10.2135/cropsci2016.09.0742openalex-snapshot
A Two‐Part Strategy for Using Genomic Selection to Develop Inbred Lines
inferredcites →https://doi.org/10.2174/138920212800543057openalex-snapshot
Application of Genomics Tools to Animal Breeding
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Introduction to Difference Equations. With illustrative examples from Economics, Psychology, and Sociology.
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Maximizing the response of selection with a predefined rate of inbreeding.
inferredcites →https://doi.org/10.31274/etd-180810-6025openalex-snapshot
Phenotypic and genomic selection for multi-trait improvement in soybean line and variety development
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pid: Process Improvement using Data
inferredcites →https://doi.org/10.33915/agnic.196openalex-snapshot
Varietal Experiments with Soybeans
inferredcites →https://doi.org/10.3835/plantgenome2011.02.0007openalex-snapshot
Accuracy and Training Population Design for Genomic Selection on Quantitative Traits in Elite North American Oats
inferredcites →https://doi.org/10.3835/plantgenome2011.08.0024openalex-snapshot
Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP
inferredcites →https://doi.org/10.3835/plantgenome2012.11.0030openalex-snapshot
Accuracy of Genomewide Selection for Different Traits with Constant Population Size, Heritability, and Number of Markers
inferredcites →https://doi.org/10.3835/plantgenome2014.10.0074openalex-snapshot
Genetic Gain from Phenotypic and Genomic Selection for Quantitative Resistance to Stem Rust of Wheat
inferredcites →https://doi.org/10.3835/plantgenome2016.10.0109openalex-snapshot
Genetic Characterization of the Soybean Nested Association Mapping Population
inferredcites →https://doi.org/10.3835/plantgenome2018.03.0017openalex-snapshot
Prospects and Challenges of Applied Genomic Selection—A New Paradigm in Breeding for Grain Yield in Bread Wheat
inferredcites →https://doi.org/10.48550/arxiv.1706.05544openalex-snapshot
Rgtsvm: Support Vector Machines on a GPU in R
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inferred← citeshttps://doi.org/10.1371/journal.pone.0250665openalex-snapshot
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inferred← citeshttps://doi.org/10.3389/fgene.2021.675500openalex-snapshot
Strategies to Assure Optimal Trade-Offs Among Competing Objectives for the Genetic Improvement of Soybean
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