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Insights on the taxonomy and ecogenomics of the Synechococcus collective
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/bf00428340openalex-snapshot
Phosphate utilization and alkaline phosphatase activity in Anacystis nidulans (Synechococcus)
inferredcites →https://doi.org/10.1007/s00203-014-1071-2openalex-snapshot
Microbial taxonomy in the post-genomic era: Rebuilding from scratch?
inferredcites →https://doi.org/10.1007/s00203-016-1256-yopenalex-snapshot
Proposal of fifteen new species of Parasynechococcus based on genomic, physiological and ecological features
inferredcites →https://doi.org/10.1016/j.biortech.2016.02.128openalex-snapshot
Metabolic model of Synechococcus sp. PCC 7002: Prediction of flux distribution and network modification for enhanced biofuel production
inferredcites →https://doi.org/10.1038/277293a0openalex-snapshot
Widespread occurrence of a unicellular, marine, planktonic, cyanobacterium
inferredcites →https://doi.org/10.1038/ismej.2011.106openalex-snapshot
Novel lineages of Prochlorococcus and Synechococcus in the global oceans
inferredcites →https://doi.org/10.1038/ismej.2015.115openalex-snapshot
Co-occurring Synechococcus ecotypes occupy four major oceanic regimes defined by temperature, macronutrients and iron
inferredcites →https://doi.org/10.1038/nature01943openalex-snapshot
The genome of a motile marine Synechococcus
inferredcites →https://doi.org/10.1038/nbt.4229openalex-snapshot
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
inferredcites →https://doi.org/10.1038/nmeth.3176openalex-snapshot
Fast and sensitive protein alignment using DIAMOND
inferredcites →https://doi.org/10.1038/nmicrobiol.2016.48openalex-snapshot
A new view of the tree of life
inferredcites →https://doi.org/10.1038/nrmicro1236openalex-snapshot
Re-evaluating prokaryotic species
inferredcites →https://doi.org/10.1038/s41396-018-0287-6openalex-snapshot
Parallel phylogeography of Prochlorococcus and Synechococcus
inferredcites →https://doi.org/10.1038/sdata.2017.206openalex-snapshot
Australia’s continental-scale acoustic tracking database and its automated quality control process
inferredcites →https://doi.org/10.1038/sdata.2018.154openalex-snapshot
Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments
inferredcites →https://doi.org/10.1073/pnas.0602963103openalex-snapshot
Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment
inferredcites →https://doi.org/10.1073/pnas.1217107110openalex-snapshot
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
inferredcites →https://doi.org/10.1073/pnas.1307701110openalex-snapshot
Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
inferredcites →https://doi.org/10.1073/pnas.1524865113openalex-snapshot
Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria
inferredcites →https://doi.org/10.1085/jgp.23.6.661openalex-snapshot
STUDIES ON THE CHLOROPHYLLS AND PHOTOSYNTHESIS OF THERMAL ALGAE FROM YELLOWSTONE NATIONAL PARK, CALIFORNIA, AND NEVADA
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btz188openalex-snapshot
GToTree: a user-friendly workflow for phylogenomics
inferredcites →https://doi.org/10.1093/dnares/9.4.123openalex-snapshot
Complete Genome Structure of the Thermophilic Cyanobacterium Thermosynechococcus elongatus BP-1
inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
inferredcites →https://doi.org/10.1093/molbev/msw046openalex-snapshot
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gku1223openalex-snapshot
Expanded microbial genome coverage and improved protein family annotation in the COG database
inferredcites →https://doi.org/10.1093/nar/gkv1226openalex-snapshot
Assembly: a resource for assembled genomes at NCBI
inferredcites →https://doi.org/10.1099/ijs.0.056994-0openalex-snapshot
Taxonomic use of DNA G+C content and DNA–DNA hybridization in the genomic age
inferredcites →https://doi.org/10.1099/ijsem.0.002516openalex-snapshot
Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
inferredcites →https://doi.org/10.1101/cshperspect.a018085openalex-snapshot
Genome-Based Microbial Taxonomy Coming of Age
inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
inferredcites →https://doi.org/10.1109/mcse.2007.55openalex-snapshot
Matplotlib: A 2D Graphics Environment
inferredcites →https://doi.org/10.1111/1462-2920.14377openalex-snapshot
Ecological and genomic features of two widespread freshwater picocyanobacteria
inferredcites →https://doi.org/10.1111/1462-2920.14552openalex-snapshot
Marine Synechococcus isolates representing globally abundant genomic lineages demonstrate a unique evolutionary path of genome reduction without a decrease in GC content
inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03808.xopenalex-snapshot
Cryptic diversity of the symbiotic cyanobacterium Synechococcus spongiarum among sponge hosts
inferredcites →https://doi.org/10.1111/j.1462-2920.2007.01440.xopenalex-snapshot
Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes
inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02514.xopenalex-snapshot
Multi‐locus sequence analysis, taxonomic resolution and biogeography of marine Synechococcus
inferredcites →https://doi.org/10.1111/j.1749-6632.1936.tb56976.xopenalex-snapshot
YELLOWSTONE THERMAL MYXOPHYCEAE
inferredcites →https://doi.org/10.1128/aem.05927-11openalex-snapshot
Fine-Scale Distribution Patterns of Synechococcus Ecological Diversity in Microbial Mats of Mushroom Spring, Yellowstone National Park
inferredcites →https://doi.org/10.1128/aem.69.5.2430-2443.2003openalex-snapshot
Clade-Specific 16S Ribosomal DNA Oligonucleotides Reveal the Predominance of a Single Marine Synechococcus Clade throughout a Stratified Water Column in the Red Sea
inferredcites →https://doi.org/10.1128/br.35.2.171-205.1971openalex-snapshot
Purification and properties of unicellular blue-green algae (order Chroococcales)
inferredcites →https://doi.org/10.1128/genomea.00268-17openalex-snapshot
Draft Genome Sequences of “ Candidatus Synechococcus spongiarum,” Cyanobacterial Symbionts of the Mediterranean Sponge Aplysina aerophoba
inferredcites →https://doi.org/10.1128/jb.01688-14openalex-snapshot
A Proposed Genus Boundary for the Prokaryotes Based on Genomic Insights
inferredcites →https://doi.org/10.1128/jb.187.18.6258-6264.2005openalex-snapshot
Towards a Genome-Based Taxonomy for Prokaryotes
inferredcites →https://doi.org/10.1128/microbe.9.111.1openalex-snapshot
Bypassing Cultivation To Identify Bacterial Species
inferredcites →https://doi.org/10.1186/1471-2105-11-119openalex-snapshot
Prodigal: prokaryotic gene recognition and translation initiation site identification
inferredcites →https://doi.org/10.1186/gb-2007-8-12-r259openalex-snapshot
Diversity and evolution of phycobilisomes in marine Synechococcusspp.: a comparative genomics study
inferredcites →https://doi.org/10.1186/gb-2008-9-5-r90openalex-snapshot
Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria
inferredcites →https://doi.org/10.1371/journal.pcbi.1002195openalex-snapshot
Accelerated Profile HMM Searches
inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
inferredcites →https://doi.org/10.21105/joss.03021openalex-snapshot
seaborn: statistical data visualization
inferredcites →https://doi.org/10.3354/meps291065openalex-snapshot
Ecology of a novel Synechococcus clade occurring in dense populations in saline Antarctic lakes
inferredcites →https://doi.org/10.3389/fmicb.2012.00213openalex-snapshot
Diversity and Distribution of Marine Synechococcus: Multiple Gene Phylogenies for Consensus Classification and Development of qPCR Assays for Sensitive Measurement of Clades in the Ocean
inferredcites →https://doi.org/10.3389/fmicb.2017.01151openalex-snapshot
Novel Synechococcus Genomes Reconstructed from Freshwater Reservoirs
inferredcites →https://doi.org/10.3389/fmicb.2017.02132openalex-snapshot
Ecogenomics and Taxonomy of Cyanobacteria Phylum
inferredcites →https://doi.org/10.4319/lo.2003.48.5.1721openalex-snapshot
Elemental composition of marine Prochlorococcus and Synechococcus : Implications for the ecological stoichiometry of the sea
inferredcites →https://doi.org/10.5962/bhl.title.142975openalex-snapshot
Gattungen einzelliger Algen physiologisch und systematisch bearbeitet,
inferredcites →https://doi.org/10.7717/peerj.1522openalex-snapshot
Comparative genomics ofSynechococcusand proposal of the new genusParasynechococcus
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