On the public citation graph

The TRF2 General Transcription Factor Is a Key Regulator of Cell Cycle Progression

https://doi.org/10.1101/2020.03.27.011288

0 signed · 82 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/cyto.a.21091openalex-snapshot

An imaging flow cytometric method for measuring cell division history and molecular symmetry during mitosis

inferredcites →https://doi.org/10.1002/dvdy.21350openalex-snapshot

dTrf2 is required for transcriptional and developmental responses to ecdysone during Drosophila metamorphosis

inferredcites →https://doi.org/10.1002/wdev.21openalex-snapshot

Perspectives on the RNA polymerase II core promoter

inferredcites →https://doi.org/10.1007/s004120050256openalex-snapshot

Mitosis-specific phosphorylation of histone H3 initiates primarily within pericentromeric heterochromatin during G2 and spreads in an ordered fashion coincident with mitotic chromosome condensation

inferredcites →https://doi.org/10.1016/0092-8674(91)90101-4openalex-snapshot

Colony-stimulating factor 1 regulates novel cyclins during the G1 phase of the cell cycle

inferredcites →https://doi.org/10.1016/j.bbagrm.2013.11.003openalex-snapshot

Chromatin and DNA sequences in defining promoters for transcription initiation

inferredcites →https://doi.org/10.1016/j.bbagrm.2015.04.003openalex-snapshot

The core promoter: At the heart of gene expression

inferredcites →https://doi.org/10.1016/j.cell.2014.02.009openalex-snapshot

Looping Back to Leap Forward: Transcription Enters a New Era

inferredcites →https://doi.org/10.1016/j.cub.2008.01.041openalex-snapshot

RNAi of Mitotic Cyclins in Drosophila Uncouples the Nuclear and Centrosome Cycle

inferredcites →https://doi.org/10.1016/j.cub.2015.01.053openalex-snapshot

Cyclin B3 Is a Mitotic Cyclin that Promotes the Metaphase-Anaphase Transition

inferredcites →https://doi.org/10.1016/j.devcel.2008.01.018openalex-snapshot

Epigenetic Blocking of an Enhancer Region Controls Irradiation-Induced Proapoptotic Gene Expression in Drosophila Embryos

inferredcites →https://doi.org/10.1016/j.gde.2010.06.004openalex-snapshot

Developmental regulation of transcription initiation: more than just changing the actors

inferredcites →https://doi.org/10.1016/j.jim.2006.01.018openalex-snapshot

Quantitative measurement of nuclear translocation events using similarity analysis of multispectral cellular images obtained in flow

inferredcites →https://doi.org/10.1016/j.ydbio.2005.12.014openalex-snapshot

scylla and charybde, homologues of the human apoptotic gene RTP801, are required for head involution in Drosophila

inferredcites →https://doi.org/10.1016/s0021-9258(19)61510-3openalex-snapshot

Drosophila Pro-apoptotic Bcl-2/Bax Homologue Reveals Evolutionary Conservation of Cell Death Mechanisms

inferredcites →https://doi.org/10.1016/s0092-8674(00)80627-3openalex-snapshot

Drosophila p53 Binds a Damage Response Element at the reaper Locus

inferredcites →https://doi.org/10.1016/s0092-8674(01)80010-6openalex-snapshot

Transcription Properties of a Cell Type–Specific TATA-Binding Protein, TRF

inferredcites →https://doi.org/10.1016/s0092-8674(02)00802-4openalex-snapshot

Destabilizing Influences in Apoptosis

inferredcites →https://doi.org/10.1016/s0925-4773(01)00439-7openalex-snapshot

Cell- and stage-specific high-level expression of TBP-related factor 2 (TRF2) during mouse spermatogenesis

inferredcites →https://doi.org/10.1016/s0960-9822(00)00474-7openalex-snapshot

The Drosophila Bcl-2 family member dBorg-1 functions in the apoptotic response to UV-irradiation

inferredcites →https://doi.org/10.1016/s0960-9822(01)00076-8openalex-snapshot

TBP is not universally required for zygotic RNA polymerase II transcription in zebrafish

inferredcites →https://doi.org/10.1016/s0968-0004(99)01436-xopenalex-snapshot

The TBP-like factor: an alternative transcription factor in Metazoa?

inferredcites →https://doi.org/10.1016/s1097-2765(00)00068-xopenalex-snapshot

The TBP-like Factor CeTLF Is Required to Activate RNA Polymerase II Transcription during C. elegans Embryogenesis

inferredcites →https://doi.org/10.1016/s1097-2765(00)00069-1openalex-snapshot

TBP-like Factor Is Required for Embryonic RNA Polymerase II Transcription in C. elegans

inferredcites →https://doi.org/10.1016/s1097-2765(01)00198-8openalex-snapshot

Late Arrest of Spermiogenesis and Germ Cell Apoptosis in Mice Lacking the TBP-like TLF/TRF2 Gene

inferredcites →https://doi.org/10.1038/cdd.2009.182openalex-snapshot

Dual roles of Drosophila p53 in cell death and cell differentiation

inferredcites →https://doi.org/10.1038/emboj.2013.111openalex-snapshot

Distinct mechanisms of transcriptional pausing orchestrated by GAGA factor and M1BP, a novel transcription factor

inferredcites →https://doi.org/10.1038/ni0710-549openalex-snapshot

Tomio Tada 1934–2010

inferredcites →https://doi.org/10.1038/nrc2723openalex-snapshot

The first 30 years of p53: growing ever more complex

inferredcites →https://doi.org/10.1038/nrg3163openalex-snapshot

Metazoan promoters: emerging characteristics and insights into transcriptional regulation

inferredcites →https://doi.org/10.1038/nrm3999openalex-snapshot

Live to die another way: modes of programmed cell death and the signals emanating from dying cells

inferredcites →https://doi.org/10.1038/s41580-018-0028-8openalex-snapshot

Eukaryotic core promoters and the functional basis of transcription initiation

inferredcites →https://doi.org/10.1038/sj.emboj.7601822openalex-snapshot

TBP paralogs accommodate metazoan‐ and vertebrate‐specific developmental gene regulation

inferredcites →https://doi.org/10.1038/sj.embor.7401093openalex-snapshot

TBP homologues in embryo transcription: who does what?

inferredcites →https://doi.org/10.1038/sj.onc.1210328openalex-snapshot

p53 directs focused genomic responses in Drosophila

inferredcites →https://doi.org/10.1073/pnas.2036440100openalex-snapshot

TRF3, a TATA-box-binding protein-related factor, is vertebrate-specific and widely expressed

inferredcites →https://doi.org/10.1073/pnas.96.24.13720openalex-snapshot

Human TATA-binding protein-related factor-2 (hTRF2) stably associates with hTFIIA in HeLa cells

inferredcites →https://doi.org/10.1073/pnas.96.9.4791openalex-snapshot

TATA box-binding protein (TBP)-related factor 2 (TRF2), a third member of the TBP family

inferredcites →https://doi.org/10.1073/pnas.97.2.662openalex-snapshot

Drob-1, a Drosophila member of the Bcl-2/CED-9 family that promotes cell death

inferredcites →https://doi.org/10.1074/jbc.m116.763318openalex-snapshot

TBP-like Protein (TLP) Disrupts the p53-MDM2 Interaction and Induces Long-lasting p53 Activation

inferredcites →https://doi.org/10.1080/00087114.1974.10796589openalex-snapshot

Colchicine Effect on the Mitotic Spindle: Estimate of Multipolar Anaphase Production

inferredcites →https://doi.org/10.1080/10409230600648736openalex-snapshot

The General Transcription Machinery and General Cofactors

inferredcites →https://doi.org/10.1080/21541264.2015.1004980openalex-snapshot

TRF2: TRansForming the view of general transcription factors

inferredcites →https://doi.org/10.1080/21541264.2015.1067286openalex-snapshot

ElemeNT: a computational tool for detecting core promoter elements

inferredcites →https://doi.org/10.1083/jcb.148.4.703openalex-snapshot

Debcl, a Proapoptotic Bcl-2 Homologue, Is a Component of the Drosophila melanogaster Cell Death Machinery

inferredcites →https://doi.org/10.1083/jcb.25.1.145openalex-snapshot

THE MECHANISM OF COLCHICINE INHIBITION OF MITOSIS

inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot

HTSeq—a Python framework to work with high-throughput sequencing data

inferredcites →https://doi.org/10.1093/emboj/cdg355openalex-snapshot

Buffy, a Drosophila Bcl‐2 protein, has anti‐apoptotic and cell cycle inhibitory functions

inferredcites →https://doi.org/10.1093/nar/gkp335openalex-snapshot

MEME SUITE: tools for motif discovery and searching

inferredcites →https://doi.org/10.1093/nar/gkx676openalex-snapshot

A sequence-specific core promoter-binding transcription factor recruits TRF2 to coordinately transcribe ribosomal protein genes

inferredcites →https://doi.org/10.1093/nar/gky1131openalex-snapshot

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

inferredcites →https://doi.org/10.1101/gad.13.3.239openalex-snapshot

IAP family proteins---suppressors of apoptosis

inferredcites →https://doi.org/10.1101/gad.1608807openalex-snapshot

Transcription of histone gene cluster by differential core-promoter factors

inferredcites →https://doi.org/10.1101/gad.1623207openalex-snapshot

On a roll for new TRF targets: Figure 1.

inferredcites →https://doi.org/10.1101/gad.245662.114openalex-snapshot

TRF2, but not TBP, mediates the transcription of ribosomal protein genes

inferredcites →https://doi.org/10.1101/gad.245670.114openalex-snapshot

Drosophila TRF2 is a preferential core promoter regulator

inferredcites →https://doi.org/10.1101/gad.250563.114openalex-snapshot

TRF2 and the evolution of the bilateria

inferredcites →https://doi.org/10.1101/gad.303149.117openalex-snapshot

The punctilious RNA polymerase II core promoter

inferredcites →https://doi.org/10.1101/gad.7.5.812openalex-snapshot

Cyclin D1 is a nuclear protein required for cell cycle progression in G1.

inferredcites →https://doi.org/10.1126/science.1059188openalex-snapshot

Spermiogenesis Deficiency in Mice Lacking the Trf2 Gene

inferredcites →https://doi.org/10.1126/science.1076327openalex-snapshot

RNA Polymerase II Transcription in Murine Cells Lacking the TATA Binding Protein

inferredcites →https://doi.org/10.1126/science.1329201openalex-snapshot

Association of human cyclin E with a periodic G1-S phase protein kinase

inferredcites →https://doi.org/10.1126/science.1388288openalex-snapshot

Formation and Activation of a Cyclin E-cdk2 Complex During the G 1 Phase of the Human Cell Cycle

inferredcites →https://doi.org/10.1126/science.290.5500.2312openalex-snapshot

Distinct Roles for TBP and TBP-Like Factor in Early Embryonic Gene Transcription in Xenopus

inferredcites →https://doi.org/10.1128/mcb.00349-06openalex-snapshot

Two Isoforms of Drosophila TRF2 Are Involved in Embryonic Development, Premeiotic Chromatin Condensation, and Proper Differentiation of Germ Cells of Both Sexes

inferredcites →https://doi.org/10.1128/mcb.00476-17openalex-snapshot

GFZF, a Glutathione S -Transferase Protein Implicated in Cell Cycle Regulation and Hybrid Inviability, Is a Transcriptional Coactivator

inferredcites →https://doi.org/10.1128/mcb.19.11.7610openalex-snapshot

A Human TATA Binding Protein-Related Protein with Altered DNA Binding Specificity Inhibits Transcription from Multiple Promoters and Activators

inferredcites →https://doi.org/10.1128/mcb.24.3.1219-1231.2004openalex-snapshot

Drosophila melanogaster MNK/Chk2 and p53 Regulate Multiple DNA Repair and Apoptotic Pathways following DNA Damage

inferredcites →https://doi.org/10.1186/2045-3701-1-23openalex-snapshot

TBP-related factors: a paradigm of diversity in transcription initiation

inferredcites →https://doi.org/10.1186/gb-2002-3-12-research0087openalex-snapshot

Computational analysis of core promoters in the Drosophila genome

inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

inferredcites →https://doi.org/10.1242/bio.042168openalex-snapshot

Distinct gene-selective roles for a network of core promoter factors in Drosophila neural stem cell identity

inferredcites →https://doi.org/10.1242/dev.035493openalex-snapshot

Promoting developmental transcription

inferredcites →https://doi.org/10.1242/dev.121.10.3371openalex-snapshot

Ectopic cyclin E expression induces premature entry into S phase and disrupts pattern formation in the Drosophila eye imaginal disc

inferredcites →https://doi.org/10.1242/jcs.102.3.387openalex-snapshot

Colcemid and the mitotic cycle

inferredcites →https://doi.org/10.1371/journal.pgen.1005400openalex-snapshot

Corp Regulates P53 in Drosophila melanogaster via a Negative Feedback Loop

inferredcites →https://doi.org/10.1523/jneurosci.3726-15.2016openalex-snapshot

cGMP-Dependent Protein Kinase Encoded byforagingRegulates Motor Axon Guidance inDrosophilaby Suppressing Lola Function

inferredcites →https://doi.org/10.4161/trns.2.5.17271openalex-snapshot

The unexpected traits associated with core promoter elements

inferredcites →https://doi.org/10.7554/elife.35621openalex-snapshot

A stable mode of bookmarking by TBP recruits RNA polymerase II to mitotic chromosomes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.gene.2022.146581openalex-snapshot

Role of the TATA-box binding protein (TBP) and associated family members in transcription regulation

inferred← citeshttps://doi.org/10.1371/journal.pgen.1009668openalex-snapshot

The SAGA core module is critical during Drosophila oogenesis and is broadly recruited to promoters

inferred← citeshttps://doi.org/10.15252/embj.2023113519openalex-snapshot

Functionally distinct promoter classes initiate transcription via different mechanisms reflected in focused versus dispersed initiation patterns

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.