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Pooling RT-PCR or NGS samples has the potential to cost-effectively generate estimates of COVID-19 prevalence in resource limited environments

https://doi.org/10.1101/2020.04.03.20051995
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Sample pooling for real-time PCR detection and virulence determination of the footrot pathogen Dichelobacter nodosus
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Detection of respiratory viruses in gargle specimens of healthy children
inferredcites →https://doi.org/10.1016/j.jviromet.2017.06.010openalex-snapshot
Comparison of gargle samples and throat swab samples for the detection of respiratory pathogens
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An interactive web-based dashboard to track COVID-19 in real time
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Temporal profiles of viral load in posterior oropharyngeal saliva samples and serum antibody responses during infection by SARS-CoV-2: an observational cohort study
inferredcites →https://doi.org/10.1038/ismej.2015.138openalex-snapshot
Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases
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Next Generation Sequencing of Pooled Samples: Guideline for Variants’ Filtering
inferredcites →https://doi.org/10.1128/jcm.00787-07openalex-snapshot
Optimizing Screening for Acute Human Immunodeficiency Virus Infection with Pooled Nucleic Acid Amplification Tests
inferredcites →https://doi.org/10.1128/jcm.01800-09openalex-snapshot
High-Throughput Pooling and Real-Time PCR-Based Strategy for Malaria Detection
inferredcites →https://doi.org/10.1128/jcm.03609-14openalex-snapshot
Cost-Effective Pooling of DNA from Nasopharyngeal Swab Samples for Large-Scale Detection of Bacteria by Real-Time PCR
inferredcites →https://doi.org/10.1128/jcm.05631-11openalex-snapshot
Pooling Nasopharyngeal/Throat Swab Specimens To Increase Testing Capacity for Influenza Viruses by PCR
inferredcites →https://doi.org/10.1128/jcm.42.10.4866-4867.2004openalex-snapshot
Pooling of Clinical Specimens Prior to Testing for Chlamydia trachomatis by PCR Is Accurate and Cost Saving
inferredcites →https://doi.org/10.1136/jcp.41.5.582openalex-snapshot
Pooling of sera for human immunodeficiency virus (HIV) testing: an economical method for use in developing countries.
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Combinatorial Group Testing and Its Applications
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Combinatorial Group Testing and Its Applications
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Theoretical and Experimental Approaches to Estimate the Usefulness of Pooled Serum Samples for the Diagnosis of Postweaning Multisystemic Wasting Syndrome
inferredcites →https://doi.org/10.1371/journal.pone.0093491openalex-snapshot
Estimation of the Relative Sensitivity of qPCR Analysis Using Pooled Samples
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Sampling and Pooling Methods for Capturing Herd Level Antibiotic Resistance in Swine Feces using qPCR and CFU Approaches
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Severe Outcomes Among Patients with Coronavirus Disease 2019 (COVID-19) — United States, February 12–March 16, 2020
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inferredcites →https://doi.org/10.3201/eid1005.030682openalex-snapshot
Laboratory Diagnosis of SARS

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Optimization of group size in pool testing strategy for SARS‐CoV‐2: A simple mathematical model
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SARS-CoV-2 pandemic: a review of molecular diagnostic tools including sample collection and commercial response with associated advantages and limitations
inferred← citeshttps://doi.org/10.1007/s00216-023-04788-3openalex-snapshot
Sample pooling and incurred samples improve analytical throughput and quality control of lipophilic phycotoxins screening in bivalve mollusks
inferred← citeshttps://doi.org/10.1007/s00580-023-03445-6openalex-snapshot
Evaluation of pooling strategy of SARS-CoV-2 RT-PCR in limited resources setting in Egypt at low prevalence
inferred← citeshttps://doi.org/10.1007/s40588-021-00157-9openalex-snapshot
COVID-19: Diagnostics, Therapeutic Advances, and Vaccine Development
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Updated insight into COVID-19 disease and health management to combat the pandemic
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Correcting data imbalance for semi-supervised COVID-19 detection using X-ray chest images
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Obtaining Prevalence Estimates of Coronavirus Disease 2019: A Model to Inform Decision-Making
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Poolkeh Finds the Optimal Pooling Strategy for a Population-wide COVID-19 Testing (Israel, UK, and US as Test Cases)
inferred← citeshttps://doi.org/10.1101/2020.05.30.20117721openalex-snapshot
A comparative evaluation of a dye-based and probe-based RT-qPCR assay for the screening of SARS-CoV-2 using individual and pooled-sample testing
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State-wise estimates of current hospital beds, intensive care unit (ICU) beds and ventilators in India: Are we prepared for a surge in COVID-19 hospitalizations?
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Look before diving into pooling of SARS-CoV-2 samples on high throughput analyzers
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Evaluation of RT-PCR pooling test for the detection of SARS-CoV-2 in low-resource setting
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Optimum Detection of Defective Elements in Non-Adaptive Group Testing
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Dealing with Scarce Labelled Data: Semi-supervised Deep Learning with Mix Match for Covid-19 Detection Using Chest X-ray Images
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Ensemble Average Analysis of Non-Adaptive Group Testing with Sparse Pooling Graphs
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Modelling COVID-19 transmission in Africa: countrywise projections of total and severe infections under different lockdown scenarios
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AdaPool: Multi-Armed Bandits for Adaptive Virology Screening on Cyber-Physical Digital-Microfluidic Biochips
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Optimizing COVID-19 surveillance in long-term care facilities: a modelling study
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The challenge and management of nosocomial infection control during the “post-outbreak” period of SARS-CoV-2
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Group testing as a strategy for COVID-19 epidemiological monitoring and community surveillance
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Evaluation of pool-based testing approaches to enable population-wide screening for COVID-19
inferred← citeshttps://doi.org/10.3390/ijerph17238994openalex-snapshot
Situation of India in the COVID-19 Pandemic: India’s Initial Pandemic Experience
inferred← citeshttps://doi.org/10.48550/arxiv.2007.09780openalex-snapshot
Implementing Stepped Pooled Testing for Rapid COVID-19 Detection
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Pooled-Testing for SARS-CoV-2 Reverse Transcription Polymerase Chain Reaction (RT-PCR) in asymptomatic healthcare workers in EL-Raghy isolation COVID-19 hospital, Assiut University
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Modélisation mathématique et simulation de la transmission, la surveillance et le contrôle des agents pathogènes dans les milieux de soins
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