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Origin and Evolution of DNA methyltransferases (DNMT) along the tree of life: A multi-genome survey
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/(sici)1521-1878(199905)21:5<402::aid-bies7>3.0.co;2-bopenalex-snapshot
Eukaryotic DNA methylation as an evolutionary device
inferredcites →https://doi.org/10.1016/0022-2836(89)90480-4openalex-snapshot
Cytosine-specific type II DNA methyltransferases
inferredcites →https://doi.org/10.1016/0092-8674(79)90329-5openalex-snapshot
Methylated and unmethylated DNA compartments in the sea urchin genome
inferredcites →https://doi.org/10.1016/0092-8674(92)90561-popenalex-snapshot
A targeting sequence directs DNA methyltransferase to sites of DNA replication in mammalian nuclei
inferredcites →https://doi.org/10.1016/0092-8674(93)90421-lopenalex-snapshot
Crystal structure of the Hhal DNA methyltransferase complexed with S-adenosyl-l-methionine
inferredcites →https://doi.org/10.1016/j.cell.2008.03.029openalex-snapshot
Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
inferredcites →https://doi.org/10.1016/j.cub.2010.07.007openalex-snapshot
Evolution of Eukaryotic DNA Methylation and the Pursuit of Safer Sex
inferredcites →https://doi.org/10.1016/j.rbmo.2009.11.006openalex-snapshot
Comparative functional genomics of mammalian DNA methyltransferases
inferredcites →https://doi.org/10.1016/j.str.2008.01.004openalex-snapshot
Mammalian DNA Methyltransferases: A Structural Perspective
inferredcites →https://doi.org/10.1016/j.syapm.2008.07.001openalex-snapshot
The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1016/s0092-8674(00)81656-6openalex-snapshot
DNA Methyltransferases Dnmt3a and Dnmt3b Are Essential for De Novo Methylation and Mammalian Development
inferredcites →https://doi.org/10.1016/s0168-9525(00)02024-2openalex-snapshot
EMBOSS: The European Molecular Biology Open Software Suite
inferredcites →https://doi.org/10.1016/s1471-4914(02)02314-6openalex-snapshot
Epigenomics and epigenetic therapy of cancer
inferredcites →https://doi.org/10.1038/321209a0openalex-snapshot
CpG-rich islands and the function of DNA methylation
inferredcites →https://doi.org/10.1038/nature01467openalex-snapshot
Retraction Note to: Superconductivity in molecular crystals induced by charge injection
inferredcites →https://doi.org/10.1038/nature01564openalex-snapshot
The methylated component of the Neurospora crassa genome
inferredcites →https://doi.org/10.1038/nature06745openalex-snapshot
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
inferredcites →https://doi.org/10.1038/nrg1601openalex-snapshot
Gardening the genome: DNA methylation in Arabidopsis thaliana
inferredcites →https://doi.org/10.1038/nrg2719openalex-snapshot
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
inferredcites →https://doi.org/10.1073/pnas.1002720107openalex-snapshot
Conservation and divergence of methylation patterning in plants and animals
inferredcites →https://doi.org/10.1093/bib/5.2.150openalex-snapshot
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
inferredcites →https://doi.org/10.1093/bioinformatics/17.8.700openalex-snapshot
AL2CO: calculation of positional conservation in a protein sequence alignment
inferredcites →https://doi.org/10.1093/bioinformatics/19.2.295openalex-snapshot
Matrix2png: a utility for visualizing matrix data
inferredcites →https://doi.org/10.1093/bioinformatics/btl158openalex-snapshot
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btl529openalex-snapshot
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
inferredcites →https://doi.org/10.1093/molbev/msi098openalex-snapshot
Evolutionary Diversification of DNA Methyltransferases in Eukaryotic Genomes
inferredcites →https://doi.org/10.1093/nar/17.23.9823openalex-snapshot
Sequence motifs characteristic of DNA[cytosine-N4]methyltransferases: similarity to adenine and cytosine-C5 DNA-methylases
inferredcites →https://doi.org/10.1093/nar/17.7.2421openalex-snapshot
Predictive motifs derived from cytosine methyltransferases
inferredcites →https://doi.org/10.1093/nar/19.22.6183openalex-snapshot
The sequence specificity domain of cytosine-C5 methylases
inferredcites →https://doi.org/10.1093/nar/20.12.3207openalex-snapshot
The distribution of 5-methylcytosine in the nuclear genome of plants
inferredcites →https://doi.org/10.1093/nar/30.1.276openalex-snapshot
The Pfam Protein Families Database
inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
inferredcites →https://doi.org/10.1093/nar/gkh073openalex-snapshot
Database resources of the National Center for Biotechnology Information: update
inferredcites →https://doi.org/10.1093/nar/gkr1065openalex-snapshot
The Pfam protein families database
inferredcites →https://doi.org/10.1093/nar/gks390openalex-snapshot
Context-dependent conservation of DNA methyltransferases in bacteria
inferredcites →https://doi.org/10.1093/nar/gks539openalex-snapshot
SIFT web server: predicting effects of amino acid substitutions on proteins
inferredcites →https://doi.org/10.1093/nar/gkx1095openalex-snapshot
Database resources of the National Center for Biotechnology Information
inferredcites →https://doi.org/10.1101/gad.947102openalex-snapshot
DNA methylation patterns and epigenetic memory
inferredcites →https://doi.org/10.1101/gr.176601openalex-snapshot
Predicting Deleterious Amino Acid Substitutions
inferredcites →https://doi.org/10.1101/gr.212802openalex-snapshot
Accounting for Human Polymorphisms Predicted to Affect Protein Function
inferredcites →https://doi.org/10.1101/gr.849004openalex-snapshot
WebLogo: A Sequence Logo Generator: Figure 1
inferredcites →https://doi.org/10.1126/science.1091265openalex-snapshot
Maize Genome Sequencing by Methylation Filtration
inferredcites →https://doi.org/10.1126/science.1123061openalex-snapshot
Toward Automatic Reconstruction of a Highly Resolved Tree of Life
inferredcites →https://doi.org/10.1126/science.1186366openalex-snapshot
Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
inferredcites →https://doi.org/10.1126/science.274.5288.765openalex-snapshot
Nested Retrotransposons in the Intergenic Regions of the Maize Genome
inferredcites →https://doi.org/10.1126/science.277.5334.1996openalex-snapshot
Human DNA-(Cytosine-5) Methyltransferase-PCNA Complex as a Target for p21 WAF1
inferredcites →https://doi.org/10.1128/mcb.17.3.1469openalex-snapshot
Methylation of Genomes and Genes at the Invertebrate-Vertebrate Boundary
inferredcites →https://doi.org/10.1146/annurev.biochem.74.010904.153721openalex-snapshot
EUKARYOTIC CYTOSINE METHYLTRANSFERASES
inferredcites →https://doi.org/10.1186/1471-2105-11-431openalex-snapshot
Hidden Markov model speed heuristic and iterative HMM search procedure
inferredcites →https://doi.org/10.1371/journal.pone.0028104openalex-snapshot
On the Evolutionary Origin of Eukaryotic DNA Methyltransferases and Dnmt2
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/bies.202200036openalex-snapshot
Epigenetics across the evolutionary tree: New paradigms from non‐model animals
inferred← citeshttps://doi.org/10.1002/bies.202200232openalex-snapshot
Shaping eukaryotic epigenetic systems by horizontal gene transfer
inferred← citeshttps://doi.org/10.1007/978-981-96-4959-4_8openalex-snapshot
Epigenetics: Applications in Cancer Therapeutics
inferred← citeshttps://doi.org/10.1007/s10265-021-01287-3openalex-snapshot
Tissue and/or developmental stage specific methylation of nrDNA in Capsicum annuum
inferred← citeshttps://doi.org/10.1016/j.cbd.2020.100745openalex-snapshot
Comparative epigenetics in animal physiology: An emerging frontier
inferred← citeshttps://doi.org/10.1038/s41467-023-37945-4openalex-snapshot
DNMT1 mutant ants develop normally but have disrupted oogenesis
inferred← citeshttps://doi.org/10.1038/s42003-022-03119-zopenalex-snapshot
Methylation of recombinant mononucleosomes by DNMT3A demonstrates efficient linker DNA methylation and a role of H3K36me3
inferred← citeshttps://doi.org/10.1128/msystems.00747-21openalex-snapshot
Bacterial Epigenomics: Coming of Age
inferred← citeshttps://doi.org/10.3389/fevo.2021.698561openalex-snapshot
Evolutionary History of DNA Methylation Related Genes in Bivalvia: New Insights From Mytilus galloprovincialis
inferred← citeshttps://doi.org/10.3390/biom14091117openalex-snapshot
The Role of DNMT Methyltransferases and TET Dioxygenases in the Maintenance of the DNA Methylation Level
inferred← citeshttps://doi.org/10.3390/ijms27104560openalex-snapshot
Recent Advances in Searching for DNMT Inhibitors and Their Potential Application in Treating Human Diseases
inferred← citeshttps://doi.org/10.3390/life14040537openalex-snapshot
DNA Methylation Machinery in Gastropod Mollusks
inferred← citeshttps://doi.org/10.70675/7c89d865z973ez4f3czba3dzec6f96184dc8openalex-snapshot
The DNA methylation of the snail Biomphalaria glabrata, role and impact on the generation of phenotypic plasticity
inferred← citeshttps://doi.org/10.7554/elife.81002openalex-snapshot
Global analysis of cytosine and adenine DNA modifications across the tree of life
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