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Three-dimensional Genome Organization Maps in Normal Haematopoietic Stem Cells and Acute Myeloid Leukemia
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Identification of differentially expressed genes in human lung squamous cell carcinoma using suppression subtractive hybridization
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Hoxa9 and Meis1 Cooperatively Induce Addiction to Syk Signaling by Suppressing miR-146a in Acute Myeloid Leukemia
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HOXA9 Reprograms the Enhancer Landscape to Promote Leukemogenesis
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Super-Enhancers in the Control of Cell Identity and Disease
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A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
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A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome
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A Pan-Cancer Compendium of Genes Deregulated by Somatic Genomic Rearrangement across More Than 1,400 Cases
inferredcites →https://doi.org/10.1016/j.cels.2015.07.012openalex-snapshot
Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
inferredcites →https://doi.org/10.1016/j.cels.2016.07.002openalex-snapshot
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
inferredcites →https://doi.org/10.1016/j.molcel.2017.07.013openalex-snapshot
Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation
inferredcites →https://doi.org/10.1016/j.molcel.2017.08.006openalex-snapshot
Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development
inferredcites →https://doi.org/10.1016/j.ymeth.2012.04.009openalex-snapshot
Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: From fixation to computation
inferredcites →https://doi.org/10.1016/s0140-6736(06)69780-8openalex-snapshot
Acute myeloid leukaemia
inferredcites →https://doi.org/10.1038/leu.2008.198openalex-snapshot
HOX expression patterns identify a common signature for favorable AML
inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot
An integrated encyclopedia of DNA elements in the human genome
inferredcites →https://doi.org/10.1038/nrg2484openalex-snapshot
RNA-Seq: a revolutionary tool for transcriptomics
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Altered chromosomal topology drives oncogenic programs in SDH-deficient GISTs
inferredcites →https://doi.org/10.1038/s41588-020-0602-9openalex-snapshot
Three-dimensional chromatin landscapes in T cell acute lymphoblastic leukemia
inferredcites →https://doi.org/10.1038/s41598-017-02257-3openalex-snapshot
Super-Enhancers and Broad H3K4me3 Domains Form Complex Gene Regulatory Circuits Involving Chromatin Interactions
inferredcites →https://doi.org/10.1038/srep04331openalex-snapshot
Correction: Corrigendum: Quantum Limit of Quality Factor in Silicon Micro and Nano Mechanical Resonators
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Multiplex genome engineering in human cells using all-in-one CRISPR/Cas9 vector system
inferredcites →https://doi.org/10.1056/nejmoa1301689openalex-snapshot
Genomic and Epigenomic Landscapes of Adult De Novo Acute Myeloid Leukemia
inferredcites →https://doi.org/10.1073/pnas.1402238111openalex-snapshot
C/EBPα is an essential collaborator in Hoxa9/Meis1-mediated leukemogenesis
inferredcites →https://doi.org/10.1080/19491034.2015.1106676openalex-snapshot
3D genome organization in health and disease: emerging opportunities in cancer translational medicine
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/nar/gkt373openalex-snapshot
r3Cseq: an R/Bioconductor package for the discovery of long-range genomic interactions from chromosome conformation capture and next-generation sequencing data
inferredcites →https://doi.org/10.1097/moh.0000000000000245openalex-snapshot
Deregulation of the HOXA9/MEIS1 axis in acute leukemia
inferredcites →https://doi.org/10.1101/gr.201517.115openalex-snapshot
Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations
inferredcites →https://doi.org/10.1126/science.1260419openalex-snapshot
Tissue-based map of the human proteome
inferredcites →https://doi.org/10.1136/gutjnl-2018-317612openalex-snapshot
Integrated paired-end enhancer profiling and whole-genome sequencing reveals recurrent CCNE1 and IGF2 enhancer hijacking in primary gastric adenocarcinoma
inferredcites →https://doi.org/10.1158/0008-5472.can-15-1566openalex-snapshot
PBX3 and MEIS1 Cooperate in Hematopoietic Cells to Drive Acute Myeloid Leukemias Characterized by a Core Transcriptome of the MLL -Rearranged Disease
inferredcites →https://doi.org/10.1158/2159-8290.cd-16-0177openalex-snapshot
Long-Range Chromatin Interactions Drive Mutant TERT Promoter Activation
inferredcites →https://doi.org/10.1158/2159-8290.cd-17-0399openalex-snapshot
Superenhancer Analysis Defines Novel Epigenomic Subtypes of Non-APL AML, Including an RARα Dependency Targetable by SY-1425, a Potent and Selective RARα Agonist
inferredcites →https://doi.org/10.1182/blood-2010-01-264564openalex-snapshot
Meis1 maintains stemness signature in MLL-AF9 leukemia
inferredcites →https://doi.org/10.1182/blood-2015-07-604512openalex-snapshot
Epigenetics and approaches to targeted epigenetic therapy in acute myeloid leukemia
inferredcites →https://doi.org/10.1182/blood.2019002326openalex-snapshot
AML displays increased CTCF occupancy associated with aberrant gene expression and transcription factor binding
inferredcites →https://doi.org/10.1186/s13059-017-1253-8openalex-snapshot
Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours
inferredcites →https://doi.org/10.1242/dev.011932openalex-snapshot
meis1regulatescyclin D1andc-mycexpression, and controls the proliferation of the multipotent cells in the early developing zebrafish eye
inferredcites →https://doi.org/10.2147/ott.s95279openalex-snapshot
Higher expression levels of the HOXA9 gene, closely associated with MLL-PTD and EZH2 mutations, predict inferior outcome in acute myeloid leukemia
inferredcites →https://doi.org/10.3109/10428194.2012.762093openalex-snapshot
Decitabine in patients with newly diagnosed and relapsed acute myeloid leukemia
inferredcites →https://doi.org/10.3324/haematol.2015.124032openalex-snapshot
Pbx3 and Meis1 cooperate through multiple mechanisms to support Hox-induced murine leukemia
inferredcites →https://doi.org/10.3390/ijms21113828openalex-snapshot
CSI NGS Portal: An Online Platform for Automated NGS Data Analysis and Sharing
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1007/s13238-020-00819-2openalex-snapshot
3D chromatin architecture and epigenetic regulation in cancer stem cells
inferred← citeshttps://doi.org/10.1038/s41467-023-36364-9openalex-snapshot
Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes
inferred← citeshttps://doi.org/10.1101/2022.02.01.475239openalex-snapshot
Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes and gene regulation
inferred← citeshttps://doi.org/10.32657/10356/155629openalex-snapshot
Computational analysis and characterization of dysregulated chromatin interactions and RNA biology in acute myeloid leukemia
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