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Dissemination routes of the carbapenem resistance plasmid pOXA-48 in a hospital setting
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1001/jama.2009.1754openalex-snapshot
International Study of the Prevalence and Outcomes of Infection in Intensive Care Units
inferredcites →https://doi.org/10.1016/j.eclinm.2019.09.005openalex-snapshot
Intestinal co-colonization with different carbapenemase-producing Enterobacterales isolates is not a rare event in an OXA-48 endemic area
inferredcites →https://doi.org/10.1016/j.plasmid.2012.01.008openalex-snapshot
Determination of conjugation rates on solid surfaces
inferredcites →https://doi.org/10.1016/j.tim.2018.06.007openalex-snapshot
Evolution of Plasmid-Mediated Antibiotic Resistance in the Clinical Context
inferredcites →https://doi.org/10.1016/s1473-3099(19)30626-7openalex-snapshot
Contact isolation versus standard precautions to decrease acquisition of extended-spectrum β-lactamase-producing Enterobacterales in non-critical care wards: a cluster-randomised crossover trial
inferredcites →https://doi.org/10.1038/nature04153openalex-snapshot
Superspreading and the effect of individual variation on disease emergence
inferredcites →https://doi.org/10.1038/nbt.3043openalex-snapshot
Exploiting CRISPR-Cas nucleases to produce sequence-specific antimicrobials
inferredcites →https://doi.org/10.1038/s41564-019-0492-8openalex-snapshot
Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread
inferredcites →https://doi.org/10.1038/s41587-019-0105-3openalex-snapshot
Engineered toxin–intein antimicrobials can selectively target and kill antibiotic-resistant bacteria in mixed populations
inferredcites →https://doi.org/10.1073/pnas.1501049112openalex-snapshot
Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae , an urgent threat to public health
inferredcites →https://doi.org/10.1073/pnas.1616248114openalex-snapshot
Multi-institute analysis of carbapenem resistance reveals remarkable diversity, unexplained mechanisms, and limited clonal outbreaks
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btt086openalex-snapshot
QUAST: quality assessment tool for genome assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot
Prokka: rapid prokaryotic genome annotation
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/cid/civ191openalex-snapshot
In Vivo Horizontal Gene Transfer of the Carbapenemase OXA-48 During a Nosocomial Outbreak
inferredcites →https://doi.org/10.1093/cid/cix132openalex-snapshot
The Hospital Water Environment as a Reservoir for Carbapenem-Resistant Organisms Causing Hospital-Acquired Infections—A Systematic Review of the Literature
inferredcites →https://doi.org/10.1093/cid/cix893openalex-snapshot
Carbapenemase-Producing Organisms: A Global Scourge
inferredcites →https://doi.org/10.1093/cid/ciy052openalex-snapshot
Intensive Care Unit Wastewater Interventions to Prevent Transmission of Multispecies Klebsiella pneumoniae Carbapenemase–Producing Organisms
inferredcites →https://doi.org/10.1093/jac/dks364openalex-snapshot
Infections caused by OXA-48-producing Klebsiella pneumoniae in a tertiary hospital in Spain in the setting of a prolonged, hospital-wide outbreak
inferredcites →https://doi.org/10.1093/jac/dkv355openalex-snapshot
A single-day point-prevalence study of faecal carriers in long-term care hospitals in Madrid (Spain) depicts a complex clonal and polyclonal dissemination of carbapenemase-producing Enterobacteriaceae
inferredcites →https://doi.org/10.1093/jac/dky284openalex-snapshot
Characterization of carbapenemase-producing Enterobacteriaceae from colonized patients in a university hospital in Madrid, Spain, during the R-GNOSIS project depicts increased clonal diversity over time with maintenance of high-risk clones
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/nar/gkr201openalex-snapshot
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
inferredcites →https://doi.org/10.1093/nar/gku1196openalex-snapshot
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
inferredcites →https://doi.org/10.1099/00221287-136-11-2319openalex-snapshot
Estimating the rate of plasmid transfer: an end-point method
inferredcites →https://doi.org/10.1111/j.1574-6976.2011.00293.xopenalex-snapshot
Multilevel population genetics in antibiotic resistance
inferredcites →https://doi.org/10.1126/scitranslmed.3004129openalex-snapshot
Tracking a Hospital Outbreak of Carbapenem-Resistant Klebsiella pneumoniae with Whole-Genome Sequencing
inferredcites →https://doi.org/10.1126/scitranslmed.3009845openalex-snapshot
Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae
inferredcites →https://doi.org/10.1128/aac.00464-16openalex-snapshot
Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene bla KPC
inferredcites →https://doi.org/10.1128/aac.01204-19openalex-snapshot
Sequence-Based Epidemiology of an OXA-48 Plasmid during a Hospital Outbreak
inferredcites →https://doi.org/10.1128/aac.01344-13openalex-snapshot
Derepressed Transfer Properties Leading to the Efficient Spread of the Plasmid Encoding Carbapenemase OXA-48
inferredcites →https://doi.org/10.1128/aac.01689-18openalex-snapshot
A Large, Refractory Nosocomial Outbreak of Klebsiella pneumoniae Carbapenemase-Producing Escherichia coli Demonstrates Carbapenemase Gene Outbreaks Involving Sink Sites Require Novel Approaches to Infection Control
inferredcites →https://doi.org/10.1128/aac.05289-11openalex-snapshot
Genetic Features of the Widespread Plasmid Coding for the Carbapenemase OXA-48
inferredcites →https://doi.org/10.1128/aac.48.1.15-22.2004openalex-snapshot
Emergence of Oxacillinase-Mediated Resistance to Imipenem inKlebsiella pneumoniae
inferredcites →https://doi.org/10.1128/cmr.00088-17openalex-snapshot
Mobile Genetic Elements Associated with Antimicrobial Resistance
inferredcites →https://doi.org/10.1128/cmr.00102-19openalex-snapshot
The Global Ascendency of OXA-48-Type Carbapenemases
inferredcites →https://doi.org/10.1128/genomea.00433-18openalex-snapshot
Complete Genome Sequence of Escherichia coli J53, an Azide-Resistant Laboratory Strain Used for Conjugation Experiments
inferredcites →https://doi.org/10.1128/microbiolspec.mtbp-0015-2016openalex-snapshot
Natural and Artificial Strategies To Control the Conjugative Transmission of Plasmids
inferredcites →https://doi.org/10.1128/msphere.00080-20openalex-snapshot
Early OXA-48-Producing Enterobacterales Isolates Recovered in a Spanish Hospital Reveal a Complex Introduction Dominated by Sequence Type 11 (ST11) and ST405 Klebsiella pneumoniae Clones
inferredcites →https://doi.org/10.1136/bmjopen-2018-024879openalex-snapshot
Local prevalence of extended-spectrum beta-lactamase (ESBL) producing Enterobacteriaceae intestinal carriers at admission and co-expression of ESBL and OXA-48 carbapenemase in Klebsiella pneumoniae: a prevalence survey in a Spanish University Hospital
inferredcites →https://doi.org/10.1186/s13059-016-0997-xopenalex-snapshot
Mash: fast genome and metagenome distance estimation using MinHash
inferredcites →https://doi.org/10.1371/journal.pcbi.1005130openalex-snapshot
SCOTTI: Efficient Reconstruction of Transmission within Outbreaks with the Structured Coalescent
inferredcites →https://doi.org/10.1371/journal.pone.0140960openalex-snapshot
Within-Host and Population Transmission of blaOXA-48 in K. pneumoniae and E. coli
inferredcites →https://doi.org/10.1371/journal.pone.0160754openalex-snapshot
Nosocomial Outbreak of OXA-48-Producing Klebsiella pneumoniae in a Chinese Hospital: Clonal Transmission of ST147 and ST383
inferredcites →https://doi.org/10.21105/joss.01762openalex-snapshot
Mashtree: a rapid comparison of whole genome sequence files
inferredcites →https://doi.org/10.2807/1560-7917.es2013.18.31.20549openalex-snapshot
Intercontinental spread of OXA-48 beta-lactamase-producing Enterobacteriaceae over a 11-year period, 2001 to 2011
inferredcites →https://doi.org/10.7554/elife.50468openalex-snapshot
Transmission dynamics and control of multidrug-resistant Klebsiella pneumoniae in neonates in a developing country
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1017/ash.2021.206openalex-snapshot
Molecular epidemiology of an extended multiple-species OXA-48 CPE outbreak in a hospital ward in Ireland, 2018–2019
inferred← citeshttps://doi.org/10.1038/s41579-020-00497-1openalex-snapshot
Beyond horizontal gene transfer: the role of plasmids in bacterial evolution
inferred← citeshttps://doi.org/10.1099/mgen.0.000675openalex-snapshot
Hospital outbreak of carbapenem-resistant Enterobacterales associated with a bla OXA-48 plasmid carried mostly by Escherichia coli ST399
inferred← citeshttps://doi.org/10.1101/2020.08.01.230672openalex-snapshot
The distribution of plasmid fitness effects explains plasmid persistence in bacterial communities
inferred← citeshttps://doi.org/10.3389/fmicb.2021.606396openalex-snapshot
Mathematical Models of Plasmid Population Dynamics
inferred← citeshttps://doi.org/10.7554/elife.65130openalex-snapshot
Collateral sensitivity associated with antibiotic resistance plasmids
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