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Evolutionary history of inversions in the direction of architecture-driven mutational pressures in crustacean mitochondrial genomes

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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/mpev.2000.0857openalex-snapshot
Patterns of Speciation Inferred from Mitochondrial DNA in North American Chthamalus (Cirripedia: Balanomorpha: Chthamaloidea)
inferredcites →https://doi.org/10.1007/978-94-017-0645-2_1openalex-snapshot
Phylogeny of decapods: moving towards a consensus
inferredcites →https://doi.org/10.1007/bf01215182openalex-snapshot
Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes
inferredcites →https://doi.org/10.1007/pl00006428openalex-snapshot
Base Composition Skews, Replication Orientation, and Gene Orientation in 12 Prokaryote Genomes
inferredcites →https://doi.org/10.1007/s00227-017-3138-5openalex-snapshot
Molecular phylogeny of obligate fish parasites of the family Cymothoidae (Isopoda, Crustacea): evolution of the attachment mode to host fish and the habitat shift from saline water to freshwater
inferredcites →https://doi.org/10.1007/s10750-018-3724-7openalex-snapshot
The first complete mitochondrial genome of Limnadia lenticularis (Branchiopoda, Spinicaudata), with new insights on its phylogeography and on the taxonomy of the genus
inferredcites →https://doi.org/10.1007/s11033-012-1573-4openalex-snapshot
Nearly complete mitochondrial genome of Polyascus gregaria and the phylogenetic relationships among maxillopodans
inferredcites →https://doi.org/10.1007/s11230-018-9792-2openalex-snapshot
The first complete mitochondrial genome of a parasitic isopod supports Epicaridea Latreille, 1825 as a suborder and reveals the less conservative genome of isopods
inferredcites →https://doi.org/10.1007/s13127-017-0346-2openalex-snapshot
An evolutionary timescale for terrestrial isopods and a lack of molecular support for the monophyly of Oniscidea (Crustacea: Isopoda)
inferredcites →https://doi.org/10.1007/s13131-019-1355-0openalex-snapshot
Mitochondrial genome of Chthamalus challengeri (Crustacea: Sessilia): gene order comparison within Chthamalidae and phylogenetic consideration within Balanomorpha
inferredcites →https://doi.org/10.1016/j.ijpara.2019.05.010openalex-snapshot
Homoplasy or plesiomorphy? Reconstruction of the evolutionary history of mitochondrial gene order rearrangements in the subphylum Neodermata
inferredcites →https://doi.org/10.1016/j.jtbi.2005.11.035openalex-snapshot
Possible multiple origins of replication in primate mitochondria: Alternative role of tRNA sequences
inferredcites →https://doi.org/10.1016/j.jtbi.2008.04.004openalex-snapshot
GC skew in protein-coding genes between the leading and lagging strands in bacterial genomes: New substitution models incorporating strand bias
inferredcites →https://doi.org/10.1016/j.mito.2014.05.009openalex-snapshot
GC skew and mitochondrial origins of replication
inferredcites →https://doi.org/10.1016/j.ympev.2005.09.012openalex-snapshot
Phylogeny of Arthropoda inferred from mitochondrial sequences: Strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution
inferredcites →https://doi.org/10.1016/j.ympev.2012.03.013openalex-snapshot
Multiple rearrangements in mitochondrial genomes of Isopoda and phylogenetic implications
inferredcites →https://doi.org/10.1016/j.ympev.2012.10.020openalex-snapshot
Genetic aspects of mitochondrial genome evolution
inferredcites →https://doi.org/10.1016/j.ympev.2012.11.002openalex-snapshot
Mitogenomic analysis of decapod crustacean phylogeny corroborates traditional views on their relationships
inferredcites →https://doi.org/10.1016/j.ympev.2013.05.002openalex-snapshot
A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny
inferredcites →https://doi.org/10.1016/j.ympev.2015.02.009openalex-snapshot
MitoPhAST, a new automated mitogenomic phylogeny tool in the post-genomic era with a case study of 89 decapod mitogenomes including eight new freshwater crayfish mitogenomes
inferredcites →https://doi.org/10.1016/j.ympev.2017.10.009openalex-snapshot
Multiple reversals of strand asymmetry in molluscs mitochondrial genomes, and consequences for phylogenetic inferences
inferredcites →https://doi.org/10.1016/j.ympev.2018.05.015openalex-snapshot
ORDER within the chaos: Insights into phylogenetic relationships within the Anomura (Crustacea: Decapoda) from mitochondrial sequences and gene order rearrangements
inferredcites →https://doi.org/10.1016/s0021-9258(19)69373-7openalex-snapshot
Mechanism of replication of human mitochondrial DNA. Localization of the 5' ends of nascent daughter strands.
inferredcites →https://doi.org/10.1016/s0092-8674(00)80688-1openalex-snapshot
Coupled Leading- and Lagging-Strand Synthesis of Mammalian Mitochondrial DNA
inferredcites →https://doi.org/10.1023/a:1017543712119openalex-snapshot
Phylogeny of decapods: moving towards a consensus
inferredcites →https://doi.org/10.1038/33577openalex-snapshot
Gene translocation links insects and crustaceans
inferredcites →https://doi.org/10.1038/373565b0openalex-snapshot
Hydrophobicity and phylogeny
inferredcites →https://doi.org/10.1038/s41598-017-06656-4openalex-snapshot
RETRACTED ARTICLE: Molecular Phylogeny and Revision of Copepod Orders (Crustacea: Copepoda)
inferredcites →https://doi.org/10.1038/s41598-017-13807-0openalex-snapshot
Mitochondrial genomes of the key zooplankton copepods Arctic Calanus glacialis and North Atlantic Calanus finmarchicus with the longest crustacean non-coding regions
inferredcites →https://doi.org/10.1038/s41598-019-38735-zopenalex-snapshot
Characterization of the mitochondrial genome of an ancient amphipod Halice sp. MT-2017 (Pardaliscidae) from 10,908 m in the Mariana Trench
inferredcites →https://doi.org/10.1038/s41598-019-40055-1openalex-snapshot
Asymmetric paralog evolution between the “cryptic” gene Bmp16 and its well-studied sister genes Bmp2 and Bmp4
inferredcites →https://doi.org/10.1038/s41598-019-47145-0openalex-snapshot
Comparative mitogenomics of the Decapoda reveals evolutionary heterogeneity in architecture and composition
inferredcites →https://doi.org/10.1038/sj.emboj.7601392openalex-snapshot
Replication of vertebrate mitochondrial DNA entails transient ribonucleotide incorporation throughout the lagging strand
inferredcites →https://doi.org/10.1038/srep41926openalex-snapshot
Limb proportions show developmental plasticity in response to embryo movement
inferredcites →https://doi.org/10.1071/is02003openalex-snapshot
Mitochondrial gene rearrangements as phylogenetic characters in the invertebrates: the examination of genome 'morphology'
inferredcites →https://doi.org/10.1073/pnas.0500577102openalex-snapshot
Replication-associated strand asymmetries in mammalian genomes: Toward detection of replication origins
inferredcites →https://doi.org/10.1073/pnas.69.3.737openalex-snapshot
Replication of Mitochondrial DNA. Circular Replicative Intermediates in Mouse L Cells
inferredcites →https://doi.org/10.1074/jbc.m114.552828openalex-snapshot
Replication Intermediates of the Linear Mitochondrial DNA of Candida parapsilosis Suggest a Common Recombination Based Mechanism for Yeast Mitochondria
inferredcites →https://doi.org/10.1080/10635150590947843openalex-snapshot
Evidence for Multiple Reversals of Asymmetric Mutational Constraints during the Evolution of the Mitochondrial Genome of Metazoa, and Consequences for Phylogenetic Inferences
inferredcites →https://doi.org/10.1080/23802359.2016.1174086openalex-snapshot
Comparative mitogenomic analyses of three North American stygobiont amphipods of the genus Stygobromus (Crustacea: Amphipoda)
inferredcites →https://doi.org/10.1080/23802359.2016.1214549openalex-snapshot
The deepest mitochondrial genome sequenced from Mariana Trench Hirondellea gigas (Amphipoda)
inferredcites →https://doi.org/10.1080/23802359.2016.1214554openalex-snapshot
The mitogenome of the amphipodHyalella lucifugax(Crustacea) and its phylogenetic placement
inferredcites →https://doi.org/10.1080/23802359.2017.1413295openalex-snapshot
The mitochondrial genome of Diaphanosoma dubium with comparison with Daphnia magna
inferredcites →https://doi.org/10.1093/bioinformatics/btl529openalex-snapshot
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/dnares/dsm019openalex-snapshot
DNA Asymmetric Strand Bias Affects the Amino Acid Composition of Mitochondrial Proteins
inferredcites →https://doi.org/10.1093/gbe/evq030openalex-snapshot
Ecdysozoan Mitogenomics: Evidence for a Common Origin of the Legged Invertebrates, the Panarthropoda
inferredcites →https://doi.org/10.1093/gbe/evu265openalex-snapshot
Is It an Ant or a Butterfly? Convergent Evolution in the Mitochondrial Gene Order of Hymenoptera and Lepidoptera
inferredcites →https://doi.org/10.1093/gbe/evv042openalex-snapshot
Evolution of the Metazoan Mitochondrial Replicase
inferredcites →https://doi.org/10.1093/gbe/evw195openalex-snapshot
Animal Mitochondrial DNA as We Do Not Know It: mt-Genome Organization and Evolution in Nonbilaterian Lineages
inferredcites →https://doi.org/10.1093/gbe/evx090openalex-snapshot
Extreme Mitogenomic Variation in Natural Populations of Chaetognaths
inferredcites →https://doi.org/10.1093/gbe/evy120openalex-snapshot
In Cold Blood: Compositional Bias and Positive Selection Drive the High Evolutionary Rate of Vampire Bats Mitochondrial Genomes
inferredcites →https://doi.org/10.1093/gbe/evz097openalex-snapshot
Pancrustacean Evolution Illuminated by Taxon-Rich Genomic-Scale Data Sets with an Expanded Remipede Sampling
inferredcites →https://doi.org/10.1093/gbe/evz121openalex-snapshot
Mitochondrial Architecture Rearrangements Produce Asymmetrical Nonadaptive Mutational Pressures That Subvert the Phylogenetic Reconstruction in Isopoda
inferredcites →https://doi.org/10.1093/genetics/165.2.735openalex-snapshot
Likelihood Analysis of Asymmetrical Mutation Bias Gradients in Vertebrate Mitochondrial Genomes
inferredcites →https://doi.org/10.1093/humrep/15.1.11openalex-snapshot
Urinary oestrogen patterns in long follicular phases
inferredcites →https://doi.org/10.1093/humrep/15.suppl_2.11openalex-snapshot
Transcription and replication of mitochondrial DNA
inferredcites →https://doi.org/10.1093/jb/mvy058openalex-snapshot
An overview of mammalian mitochondrial DNA replication mechanisms
inferredcites →https://doi.org/10.1093/jhered/esn024openalex-snapshot
The Organization of the Mitochondrial Control Region in 2 Brachyuran Crustaceans: Ucides cordatus (Ocypodidae) and Cardisoma guanhumi (Gecarcinidae)
inferredcites →https://doi.org/10.1093/molbev/msg176openalex-snapshot
Rates of Gene Rearrangement and Nucleotide Substitution Are Correlated in the Mitochondrial Genomes of Insects
inferredcites →https://doi.org/10.1093/molbev/msi012openalex-snapshot
A Comprehensive Analysis of Mammalian Mitochondrial Genome Base Composition and Improved Phylogenetic Methods
inferredcites →https://doi.org/10.1093/molbev/msj025openalex-snapshot
A Hotspot of Gene Order Rearrangement by Tandem Duplication and Random Loss in the Vertebrate Mitochondrial Genome
inferredcites →https://doi.org/10.1093/molbev/mss216openalex-snapshot
Phylotranscriptomics to Bring the Understudied into the Fold: Monophyletic Ostracoda, Fossil Placement, and Pancrustacean Phylogeny
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/mst024openalex-snapshot
Ultrafast Approximation for Phylogenetic Bootstrap
inferredcites →https://doi.org/10.1093/molbev/mst064openalex-snapshot
DAMBE5: A Comprehensive Software Package for Data Analysis in Molecular Biology and Evolution
inferredcites →https://doi.org/10.1093/molbev/msy073openalex-snapshot
DAMBE7: New and Improved Tools for Data Analysis in Molecular Biology and Evolution
inferredcites →https://doi.org/10.1093/nar/gkh823openalex-snapshot
Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes
inferredcites →https://doi.org/10.1093/nar/gkt196openalex-snapshot
Mitochondrial DNA replication proceeds via a ‘bootlace’ mechanism involving the incorporation of processed transcripts
inferredcites →https://doi.org/10.1093/nar/gkv1189openalex-snapshot
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
inferredcites →https://doi.org/10.1093/nar/gkw256openalex-snapshot
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
inferredcites →https://doi.org/10.1093/nar/gkz238openalex-snapshot
OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026011openalex-snapshot
Asymmetrical directional mutation pressure in the mitochondrial genome of mammals
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026236openalex-snapshot
Estimating Synonymous and Nonsynonymous Substitution Rates Under Realistic Evolutionary Models
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026360openalex-snapshot
The Complete Mitochondrial DNA Sequence of the Horseshoe Crab Limulus polyphemus
inferredcites →https://doi.org/10.1098/rsos.191887openalex-snapshot
Architectural instability, inverted skews and mitochondrial phylogenomics of Isopoda: outgroup choice affects the long-branch attraction artefacts
inferredcites →https://doi.org/10.1098/rspb.2003.2631openalex-snapshot
Phylogenetic position of the Pentastomida and (pan)crustacean relationships
inferredcites →https://doi.org/10.1101/gr.091132.109openalex-snapshot
‘Why genomes in pieces?’ revisited: Sucking lice do their own thing in mtDNA circle game
inferredcites →https://doi.org/10.1111/1755-0998.13096openalex-snapshot
PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
inferredcites →https://doi.org/10.1111/j.1463-6409.2012.00534.xopenalex-snapshot
The mitochondrial genomes of Cambaroides similis and Procambarus clarkii (Decapoda: Astacidea: Cambaridae): the phylogenetic implications for Reptantia
inferredcites →https://doi.org/10.1111/zsc.12298openalex-snapshot
Mitochondrial phylogenomics reveals insights into taxonomy and evolution of Penaeoidea (Crustacea: Decapoda)
inferredcites →https://doi.org/10.1163/1937240x-00002371openalex-snapshot
The forest for the trees: evaluating molecular phylogenies with an emphasis on higher-level Decapoda
inferredcites →https://doi.org/10.1163/20021975-99990204openalex-snapshot
MITOCHONDRIAL GENES AND ISOPOD PHYLOGENY (PERACARIDA: ISOPODA)
inferredcites →https://doi.org/10.1177/117693430700300006openalex-snapshot
The GC Skew Index: A Measure of Genomic Compositional Asymmetry and the Degree of Replicational Selection
inferredcites →https://doi.org/10.1186/1471-2105-9-212openalex-snapshot
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
inferredcites →https://doi.org/10.1186/1471-2148-6-44openalex-snapshot
Computing Ka and Ks with a consideration of unequal transitional substitutions
inferredcites →https://doi.org/10.1186/1471-2148-7-s1-s4openalex-snapshot
Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
inferredcites →https://doi.org/10.1186/1471-2164-12-73openalex-snapshot
Distinctive mitochondrial genome of Calanoid copepod Calanus sinicus with multiple large non-coding regions and reshuffled gene order: Useful molecular markers for phylogenetic and population studies
inferredcites →https://doi.org/10.1186/1471-2164-15-566openalex-snapshot
Next-generation sequencing, phylogenetic signal and comparative mitogenomic analyses in Metacrangonyctidae (Amphipoda: Crustacea)
inferredcites →https://doi.org/10.1186/1471-2164-7-241openalex-snapshot
The complete mitochondrial genome of the common sea slater, Ligia oceanica (Crustacea, Isopoda) bears a novel gene order and unusual control region features
inferredcites →https://doi.org/10.1186/s12864-016-3357-zopenalex-snapshot
Evolution of mitochondrial genomes in Baikalian amphipods
inferredcites →https://doi.org/10.1186/s12864-017-4237-xopenalex-snapshot
The complete mitochondrial genome of parasitic nematode Camallanus cotti: extreme discontinuity in the rate of mitogenomic architecture evolution within the Chromadorea class
inferredcites →https://doi.org/10.1186/s12864-019-5704-3openalex-snapshot
Absence of evidence is not evidence of absence: Nanopore sequencing and complete assembly of the European lobster (Homarus gammarus) mitogenome uncovers the missing nad2 and a new major gene cluster duplication
inferredcites →https://doi.org/10.1186/s40851-019-0131-5openalex-snapshot
Mitochondrial genome diversity and evolution in Branchiopoda (Crustacea)
inferredcites →https://doi.org/10.1371/journal.pgen.1004985openalex-snapshot
A Rolling Circle Replication Mechanism Produces Multimeric Lariats of Mitochondrial DNA in Caenorhabditis elegans
inferredcites →https://doi.org/10.1371/journal.pone.0000325openalex-snapshot
DNA Barcodes Provide a Quick Preview of Mitochondrial Genome Composition
inferredcites →https://doi.org/10.1371/journal.pone.0010840openalex-snapshot
Prevention of Catheter-Related Bacteremia with a Daily Ethanol Lock in Patients with Tunnelled Catheters: A Randomized, Placebo-Controlled Trial
inferredcites →https://doi.org/10.1371/journal.pone.0012708openalex-snapshot
New Views on Strand Asymmetry in Insect Mitochondrial Genomes
inferredcites →https://doi.org/10.1371/journal.pone.0034998openalex-snapshot
Toward a Global Phylogeny of the “Living Fossil" Crustacean Order of the Notostraca
inferredcites →https://doi.org/10.1371/journal.pone.0106654openalex-snapshot
The Inversion of the Control Region in Three Mitogenomes Provides Further Evidence for an Asymmetric Model of Vertebrate mtDNA Replication
inferredcites →https://doi.org/10.1371/journal.pone.0168263openalex-snapshot
Monogonont Rotifer, Brachionus calyciflorus, Possesses Exceptionally Large, Fragmented Mitogenome
inferredcites →https://doi.org/10.1371/journal.pone.0203089openalex-snapshot
The complete mitochondrial genome of Cymothoa indica has a highly rearranged gene order and clusters at the very base of the Isopoda clade
inferredcites →https://doi.org/10.1534/genetics.105.046243openalex-snapshot
Replication Origin of Mitochondrial DNA in Insects
inferredcites →https://doi.org/10.1534/genetics.109.110700openalex-snapshot
Comparative Mitochondrial Genomics of Freshwater Mussels (Bivalvia: Unionoida) With Doubly Uniparental Inheritance of mtDNA: Gender-Specific Open Reading Frames and Putative Origins of Replication
inferredcites →https://doi.org/10.2174/138920212799034776openalex-snapshot
DNA Replication and Strand Asymmetry in Prokaryotic and Mitochondrial Genomes
inferredcites →https://doi.org/10.3897/asp.67.e31696openalex-snapshot
The phylogenetic position of the Isopoda in the Peracarida (Crustacea: Malacostraca)
inferredcites →https://doi.org/10.7717/peerj.2982openalex-snapshot
Digging deeper: new gene order rearrangements and distinct patterns of codons usage in mitochondrial genomes among shrimps from the Axiidea, Gebiidea and Caridea (Crustacea: Decapoda)
inferredcites →https://doi.org/10.7717/peerj.7387openalex-snapshot
Towards a barnacle tree of life: integrating diverse phylogenetic efforts into a comprehensive hypothesis of thecostracan evolution

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107275openalex-snapshot
Mitogenomics of Cladocera (Branchiopoda): Marked gene order rearrangements and independent predation roots
inferred← citeshttps://doi.org/10.1186/s12864-020-07021-yopenalex-snapshot
Disrupted architecture and fast evolution of the mitochondrial genome of Argeia pugettensis (Isopoda): implications for speciation and fitness
inferred← citeshttps://doi.org/10.3389/fvets.2024.1376898openalex-snapshot
Complete Mitogenome sequencing of the fish louse Argulus japonicus (Crustacea: Branchiura): Comparative analyses and phylogenetic implications
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