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Recurrent evolution of two competing haplotypes in an insect DNA virus
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1 of the 97 references listed on this page is in the Retraction Watch database as retracted (export 2026-10-28): 10.7554/elife.12248 (notice 2018-04-12).
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/eji.200324610openalex-snapshot
Viral infection and Toll‐like receptor agonists induce a differential expression of type I and λ interferons in human plasmacytoid and monocyte‐derived dendritic cells
inferredcites →https://doi.org/10.1007/978-1-4020-8560-4_8openalex-snapshot
The Use of Oryctes Virus for Control of Rhinoceros Beetle in the Pacific Islands
inferredcites →https://doi.org/10.1007/978-1-4939-3167-5_18openalex-snapshot
Analysis of RNA-Seq Data Using TopHat and Cufflinks
inferredcites →https://doi.org/10.1016/j.cub.2006.01.065openalex-snapshot
Natural Selection Drives Extremely Rapid Evolution in Antiviral RNAi Genes
inferredcites →https://doi.org/10.1016/j.jinsphys.2012.07.004openalex-snapshot
Beyond RNAi: Antiviral defense strategies in Drosophila and mosquito
inferredcites →https://doi.org/10.1016/j.jip.2005.03.009openalex-snapshot
Oryctes virus—Time for a new look at a useful biocontrol agent
inferredcites →https://doi.org/10.1016/j.jip.2009.03.013openalex-snapshot
Nudiviruses and other large, double-stranded circular DNA viruses of invertebrates: New insights on an old topic
inferredcites →https://doi.org/10.1016/j.jviromet.2008.06.003openalex-snapshot
Sequencing of the large dsDNA genome of Oryctes rhinoceros nudivirus using multiple displacement amplification of nanogram amounts of virus DNA
inferredcites →https://doi.org/10.1016/j.meegid.2017.11.013openalex-snapshot
The dynamic evolution of Drosophila innubila Nudivirus
inferredcites →https://doi.org/10.1016/j.tibs.2010.10.002openalex-snapshot
How viruses hijack cell regulation
inferredcites →https://doi.org/10.1016/j.tig.2011.11.003openalex-snapshot
Viral evolution in deep time: lentiviruses and mammals
inferredcites →https://doi.org/10.1016/j.tpb.2008.04.003openalex-snapshot
Transmission–virulence trade-offs in vector-borne diseases
inferredcites →https://doi.org/10.1016/j.tplants.2011.02.010openalex-snapshot
Viral suppressors of RNA silencing
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1016/s0952-7915(02)00005-5openalex-snapshot
Drosophila immunity: paths and patterns
inferredcites →https://doi.org/10.1017/s0031182000055360openalex-snapshot
Coevolution of hosts and parasites
inferredcites →https://doi.org/10.1038/351652a0openalex-snapshot
Adaptive protein evolution at the Adh locus in Drosophila
inferredcites →https://doi.org/10.1038/nature02021openalex-snapshot
The immune response of Drosophila
inferredcites →https://doi.org/10.1038/ng.2007.60openalex-snapshot
Dynamic evolution of the innate immune system in Drosophila
inferredcites →https://doi.org/10.1038/ng.3254openalex-snapshot
Exploring population size changes using SNP frequency spectra
inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot
A framework for variation discovery and genotyping using next-generation DNA sequencing data
inferredcites →https://doi.org/10.1038/nprot.2013.084openalex-snapshot
De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity
inferredcites →https://doi.org/10.1038/sj.hdy.6884350openalex-snapshot
Local adaptation in host–parasite systems
inferredcites →https://doi.org/10.1073/pnas.0409181102openalex-snapshot
The Toll pathway is important for an antiviral response in Drosophila
inferredcites →https://doi.org/10.1073/pnas.1516122113openalex-snapshot
Cytokine Diedel and a viral homologue suppress the IMD pathway in Drosophila
inferredcites →https://doi.org/10.1073/pnas.232565499openalex-snapshot
Dobzhansky–Muller incompatibilities in protein evolution
inferredcites →https://doi.org/10.1073/pnas.91.1.48openalex-snapshot
Extension of Autographa californica nuclear polyhedrosis virus host range by interspecific replacement of a short DNA sequence in the p143 helicase gene.
inferredcites →https://doi.org/10.1086/519795openalex-snapshot
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
inferredcites →https://doi.org/10.1093/aibsbulletin/2.2.14-bopenalex-snapshot
Genetics and the Origin of Species
inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot
APE: Analyses of Phylogenetics and Evolution in R language
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btq057openalex-snapshot
Fast and SNP-tolerant detection of complex variants and splicing in short reads
inferredcites →https://doi.org/10.1093/bioinformatics/bts094openalex-snapshot
Oases:robustde novoRNA-seq assembly across the dynamic range of expression levels
inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot
HTSeq—a Python framework to work with high-throughput sequencing data
inferredcites →https://doi.org/10.1093/genetics/139.4.1805openalex-snapshot
The population genetics of speciation: the evolution of hybrid incompatibilities.
inferredcites →https://doi.org/10.1093/genetics/144.4.1331openalex-snapshot
D obzhansky , B ateson , and the Genetics of Speciation
inferredcites →https://doi.org/10.1093/molbev/msq249openalex-snapshot
Estimation of the Neutrality Index
inferredcites →https://doi.org/10.1093/molbev/mss263openalex-snapshot
Evolution of Animal and Plant Dicers: Early Parallel Duplications and Recurrent Adaptation of Antiviral RNA Binding in Plants
inferredcites →https://doi.org/10.1093/molbev/msz059openalex-snapshot
The Genome of Drosophila innubila Reveals Lineage-Specific Patterns of Selection in Immune Genes
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1093/nar/gks918openalex-snapshot
LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
inferredcites →https://doi.org/10.1093/ve/vex042openalex-snapshot
TreeTime: Maximum-likelihood phylodynamic analysis
inferredcites →https://doi.org/10.1098/rspb.1979.0081openalex-snapshot
Arms races between and within species
inferredcites →https://doi.org/10.1098/rspb.1995.0138openalex-snapshot
Coinfection and the evolution of parasite virulence
inferredcites →https://doi.org/10.1098/rstb.2008.0168openalex-snapshot
The evolution of RNAi as a defence against viruses and transposable elements
inferredcites →https://doi.org/10.1099/0022-1317-79-4-931openalex-snapshot
Two key mutations in the host-range specificity domain of the p143 gene of Autographa californica nucleopolyhedrovirus are required to kill Bombyx mori larvae.
inferredcites →https://doi.org/10.1111/j.0014-3820.2001.tb00628.xopenalex-snapshot
THE EVOLUTION OF POSTZYGOTIC ISOLATION: ACCUMULATING DOBZHANSKY-MULLER INCOMPATIBILITIES
inferredcites →https://doi.org/10.1111/j.0014-3820.2003.tb00233.xopenalex-snapshot
PERSPECTIVE: MODELS OF SPECIATION: WHAT HAVE WE LEARNED IN 40 YEARS?
inferredcites →https://doi.org/10.1111/j.0014-3820.2005.tb01801.xopenalex-snapshot
EVOLUTIONARY DYNAMICS OF A SPATIALLY STRUCTURED HOST-PARASITE ASSOCIATION: DROSOPHILA INNUBILA AND MALE-KILLING WOLBACHIA
inferredcites →https://doi.org/10.1111/j.1558-5646.1996.tb03560.xopenalex-snapshot
THE EVOLUTION OF VIRULENCE IN PATHOGENS WITH VERTICAL AND HORIZONTAL TRANSMISSION
inferredcites →https://doi.org/10.1111/mec.13474openalex-snapshot
The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens
inferredcites →https://doi.org/10.1111/mec.15701openalex-snapshot
Adaptation, ancestral variation and gene flow in a ‘Sky Island’ Drosophila species
inferredcites →https://doi.org/10.1126/science.1125694openalex-snapshot
RNA Interference Directs Innate Immunity Against Viruses in Adult Drosophila
inferredcites →https://doi.org/10.1128/jvi.01319-17openalex-snapshot
Baculovirus Molecular Evolution via Gene Turnover and Recurrent Positive Selection of Key Genes
inferredcites →https://doi.org/10.1128/jvi.67.10.6234-6238.1993openalex-snapshot
Host range expansion of Autographa californica nuclear polyhedrosis virus (NPV) following recombination of a 0.6-kilobase-pair DNA fragment originating from Bombyx mori NPV
inferredcites →https://doi.org/10.1128/jvi.75.22.11157-11165.2001openalex-snapshot
Genome Sequence of a Baculovirus Pathogenic for Culex nigripalpus
inferredcites →https://doi.org/10.1146/annurev-genet-110711-155522openalex-snapshot
Rules of Engagement: Molecular Insights from Host-Virus Arms Races
inferredcites →https://doi.org/10.1146/annurev-virology-101416-041718openalex-snapshot
Mechanisms and Concepts in RNA Virus Population Dynamics and Evolution
inferredcites →https://doi.org/10.1146/annurev.en.35.010190.001015openalex-snapshot
Baculovirus Diversity And Molecular Biology
inferredcites →https://doi.org/10.1146/annurev.genet.39.073003.112420openalex-snapshot
Molecular Signatures of Natural Selection
inferredcites →https://doi.org/10.1371/journal.pbio.0030170openalex-snapshot
A Scan for Positively Selected Genes in the Genomes of Humans and Chimpanzees
inferredcites →https://doi.org/10.1371/journal.pbio.0050278openalex-snapshot
Viral Evolution in the Genomic Age
inferredcites →https://doi.org/10.1371/journal.pbio.1002210openalex-snapshot
The Discovery, Distribution, and Evolution of Viruses Associated with Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pcbi.1002527openalex-snapshot
Standing Genetic Variation and the Evolution of Drug Resistance in HIV
inferredcites →https://doi.org/10.1371/journal.pcbi.1002806openalex-snapshot
SnIPRE: Selection Inference Using a Poisson Random Effects Model
inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
inferredcites →https://doi.org/10.1371/journal.pcbi.1003716openalex-snapshot
On the Use of Human Mobility Proxies for Modeling Epidemics
inferredcites →https://doi.org/10.1371/journal.pgen.1000698openalex-snapshot
Quantifying Adaptive Evolution in the Drosophila Immune System
inferredcites →https://doi.org/10.1371/journal.pgen.1004000openalex-snapshot
Loss and Recovery of Genetic Diversity in Adapting Populations of HIV
inferredcites →https://doi.org/10.1371/journal.pone.0007436openalex-snapshot
The Imd Pathway Is Involved in Antiviral Immune Responses in Drosophila
inferredcites →https://doi.org/10.1371/journal.pone.0026564openalex-snapshot
A DNA Virus of Drosophila
inferredcites →https://doi.org/10.1371/journal.ppat.1004507openalex-snapshot
The Toll-Dorsal Pathway Is Required for Resistance to Viral Oral Infection in Drosophila
inferredcites →https://doi.org/10.1371/journal.ppat.1006885openalex-snapshot
When are pathogen genome sequences informative of transmission events?
inferredcites →https://doi.org/10.1371/journal.ppat.1007020openalex-snapshot
p38b and JAK-STAT signaling protect against Invertebrate iridescent virus 6 infection in Drosophila
inferredcites →https://doi.org/10.1371/journal.ppat.1007050openalex-snapshot
Isolation of a natural DNA virus of Drosophila melanogaster, and characterisation of host resistance and immune responses
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.1515/9780691187051openalex-snapshot
Fitness Landscapes and the Origin of Species (MPB-41)
inferredcites →https://doi.org/10.1534/g3.119.400605openalex-snapshot
Evolutionary Dynamics in Structured Populations Under Strong Population Genetic Forces
inferredcites →https://doi.org/10.1534/genetics.107.081810openalex-snapshot
Population Genetics of Speciation in Two Closely Related Wild Tomatoes (Solanum Section Lycopersicon)
inferredcites →https://doi.org/10.1534/genetics.117.300567openalex-snapshot
RNA-Interference Pathways Display High Rates of Adaptive Protein Evolution in Multiple Invertebrates
inferredcites →https://doi.org/10.18637/jss.v033.i01openalex-snapshot
Regularization Paths for Generalized Linear Models via Coordinate Descent
inferredcites →https://doi.org/10.18637/jss.v033.i09openalex-snapshot
Solving Differential Equations in R : Package deSolve
inferredcites →https://doi.org/10.22541/au.159242077.72607009openalex-snapshot
Selection and demography shape genomic variation in a ‘Sky Island’ species
inferredcites →https://doi.org/10.32614/cran.package.survmineropenalex-snapshot
survminer: Drawing Survival Curves using 'ggplot2'
inferredcites →https://doi.org/10.3390/v7072788openalex-snapshot
Ultra Deep Sequencing of a Baculovirus Population Reveals Widespread Genomic Variations
inferredcites →https://doi.org/10.4161/fly.19695openalex-snapshot
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
inferredcites →https://doi.org/10.5860/choice.35-4473openalex-snapshot
Population genetics: a concise guide
inferredcites →https://doi.org/10.7554/elife.12248openalex-snapshot
RETRACTED: A mathematical model explains saturating axon guidance responses to molecular gradients
inferredcites →https://doi.org/10.7554/elife.41815openalex-snapshot
Immune genes are hotspots of shared positive selection across birds and mammals
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.meegid.2021.104749openalex-snapshot
Genomic diversity in a population of Spodoptera frugiperda nucleopolyhedrovirus
inferred← citeshttps://doi.org/10.1101/2020.10.27.358317openalex-snapshot
Genomic Diversity in a Population of Spodoptera frugiperda Nucleopolyhedrovirus
inferred← citeshttps://doi.org/10.1111/mec.15701openalex-snapshot
Adaptation, ancestral variation and gene flow in a ‘Sky Island’ Drosophila species
inferred← citeshttps://doi.org/10.22541/au.159242077.72607009openalex-snapshot
Selection and demography shape genomic variation in a ‘Sky Island’ species
inferred← citeshttps://doi.org/10.35537/10915/122666openalex-snapshot
Caracterización de baculovirus autóctonos para el control de la oruga militar tardía (Spodoptera frugiperda)
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