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Genome-wide Association Studies Reveal Important Candidate Genes for the Bacillus pumilus TUAT-1- Arabidopsis thaliana Interaction

https://doi.org/10.1101/2020.05.26.117002

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Short-term effects of biochar and Bacillus pumilus TUAT-1 on the growth of forage rice and its associated soil microbial community and soil properties

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Analysis of plant growth-promoting properties of Bacillus amyloliquefaciens UCMB5113 using Arabidopsis thaliana as host plant

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Natural genetic variation in Arabidopsis for responsiveness to plant growth-promoting rhizobacteria

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Plant TRAF Proteins Regulate NLR Immune Receptor Turnover

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Sequence and expression analysis of the C3HC4-type RING finger gene family in rice

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Novel chitinase producer Bacillus pumilus RST25 isolated from the shellfish processing industry revealed antifungal potential against phyto-pathogens

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Plant growth promotion in cereal and leguminous agricultural important plants: From microorganism capacities to crop production

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The Arabidopsis transcriptional repressor ERF9 participates in resistance against necrotrophic fungi

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MYB transcription factors in Arabidopsis

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Catch me if you can: bacterial effectors and plant targets

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Life in grasses: diazotrophic endophytes

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bZIP transcription factors in Arabidopsis

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The plant‐growth‐promoting rhizobacteria Bacillus pumilus and Bacillus licheniformis produce high amounts of physiologically active gibberellins

inferredcites →https://doi.org/10.1038/emboj.2010.164openalex-snapshot

Arabidopsis S6 kinase mutants display chromosome instability and altered RBR1–E2F pathway activity

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Metallochaperone-like genes in Arabidopsis thaliana

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The Transcriptional Co-activator MBF1c Is a Key Regulator of Thermotolerance in Arabidopsis thaliana

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Spore inoculation of Bacillus pumilus TUAT1 strain, a biofertilizer microorganism, enhances seedling growth by promoting root system development in rice

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ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

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Role and mechanisms of callose priming in mycorrhiza-induced resistance

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An Arabidopsis rhomboid protease has roles in the chloroplast and in flower development

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Ubiquitin-Specific Protease 14 (UBP14) Is Involved in Root Responses to Phosphate Deficiency in Arabidopsis

inferredcites →https://doi.org/10.1093/nar/gky1131openalex-snapshot

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

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Overexpression of PRE1 and its Homologous Genes Activates Gibberellin-dependent Responses in Arabidopsis thaliana

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Syntaxin of Plant Proteins SYP123 and SYP132 Mediate Root Hair Tip Growth in Arabidopsis thaliana

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ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index

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Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

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A Genome-Wide Functional Investigation into the Roles of Receptor-Like Proteins in Arabidopsis

inferredcites →https://doi.org/10.1104/pp.108.121384openalex-snapshot

Identification of Regulatory Pathways Controlling Gene Expression of Stress-Responsive Mitochondrial Proteins in Arabidopsis

inferredcites →https://doi.org/10.1104/pp.108.130591openalex-snapshot

Tissue-Specific Expression Patterns of Arabidopsis NF-Y Transcription Factors Suggest Potential for Extensive Combinatorial Complexity

inferredcites →https://doi.org/10.1104/pp.111.189738openalex-snapshot

Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response

inferredcites →https://doi.org/10.1104/pp.17.01227openalex-snapshot

Phosphoglycerate Kinases Are Co-Regulated to Adjust Metabolism and to Optimize Growth

inferredcites →https://doi.org/10.1104/pp.18.00217openalex-snapshot

EZ-Root-VIS: A Software Pipeline for the Rapid Analysis and Visual Reconstruction of Root System Architecture

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Digital Imaging Combined with Genome-Wide Association Mapping Links Loci to Plant-Pathogen Interaction Traits

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The Arabidopsis Auxin-Inducible Gene ARGOS Controls Lateral Organ Size

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Highly Divergent Methyltransferases Catalyze a Conserved Reaction in Tocopherol and Plastoquinone Synthesis in Cyanobacteria and Photosynthetic Eukaryotes

inferredcites →https://doi.org/10.1105/tpc.10.9.1479openalex-snapshot

Phytochrome E Influences Internode Elongation and Flowering Time in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.104.028530openalex-snapshot

The Arabidopsis WAVY GROWTH 2 Protein Modulates Root Bending in Response to Environmental Stimuli

inferredcites →https://doi.org/10.1105/tpc.108.064964openalex-snapshot

Arabidopsis STN7 Kinase Provides a Link between Short- and Long-Term Photosynthetic Acclimation

inferredcites →https://doi.org/10.1105/tpc.109.071837openalex-snapshot

The Plastid Isoform of Triose Phosphate Isomerase Is Required for the Postgerminative Transition from Heterotrophic to Autotrophic Growth in Arabidopsis

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Deficiency in Fatty Acid Synthase Leads to Premature Cell Death and Dramatic Alterations in Plant Morphology

inferredcites →https://doi.org/10.1111/1758-2229.12502openalex-snapshot

The oil‐contaminated soil diazotroph A zoarcus olearius DQS ‐4 T is genetically and phenotypically similar to the model grass endophyte A zoarcus sp. BH 72

inferredcites →https://doi.org/10.1111/j.1365-313x.2005.02397.xopenalex-snapshot

AtATG18a is required for the formation of autophagosomes during nutrient stress and senescence in Arabidopsis thaliana

inferredcites →https://doi.org/10.1111/j.1365-313x.2006.02969.xopenalex-snapshot

The Arabidopsis thaliana sulfiredoxin is a plastidic cysteine‐sulfinic acid reductase involved in the photooxidative stress response

inferredcites →https://doi.org/10.1111/j.1399-3054.1962.tb08052.xopenalex-snapshot

A Revised Medium for Rapid Growth and Bio Assays with Tobacco Tissue Cultures

inferredcites →https://doi.org/10.1111/nph.12194openalex-snapshot

ALFIN ‐ LIKE 6 is involved in root hair elongation during phosphate deficiency in Arabidopsis

inferredcites →https://doi.org/10.1111/tpj.12777openalex-snapshot

Robust biological nitrogen fixation in a model grass–bacterial association

inferredcites →https://doi.org/10.1111/tpj.13020openalex-snapshot

Arabidopsis TAF 1 is an MRE 11‐interacting protein required for resistance to genotoxic stress and viability of the male gametophyte

inferredcites →https://doi.org/10.1186/1746-4811-9-1openalex-snapshot

Novel scanning procedure enabling the vectorization of entire rhizotron-grown root systems

inferredcites →https://doi.org/10.1186/1746-4811-9-29openalex-snapshot

The advantages and limitations of trait analysis with GWAS: a review

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Evolution of Chloroplast J Proteins

inferredcites →https://doi.org/10.1371/journal.pone.0132500openalex-snapshot

The THERMOSENSITIVE MALE STERILE 1 Interacts with the BiPs via DnaJ Domain and Stimulates Their ATPase Enzyme Activities in Arabidopsis

inferredcites →https://doi.org/10.3389/fphys.2017.00667openalex-snapshot

Bacillus: A Biological Tool for Crop Improvement through Bio-Molecular Changes in Adverse Environments

inferredcites →https://doi.org/10.3389/fpls.2014.00525openalex-snapshot

Beneficial soil bacterium Bacillus subtilis (GB03) augments salt tolerance of white clover

inferredcites →https://doi.org/10.3390/agronomy8100216openalex-snapshot

Bacillus Pumilus Strain TUAT-1 and Nitrogen Application in Nursery Phase Promote Growth of Rice Plants under Field Conditions

inferredcites →https://doi.org/10.3390/ijms20040869openalex-snapshot

PACLOBUTRAZOL-RESISTANCE Gene Family Regulates Floral Organ Growth with Unequal Genetic Redundancy in Arabidopsis thaliana

inferredcites →https://doi.org/10.3390/molecules21050573openalex-snapshot

Role of Plant Growth Promoting Rhizobacteria in Agricultural Sustainability—A Review

inferredcites →https://doi.org/10.3390/molecules21081078openalex-snapshot

Evaluation of Biosynthetic Pathway and Engineered Biosynthesis of Alkaloids

inferredcites →https://doi.org/10.5511/plantbiotechnology.11.1228aopenalex-snapshot

Role of the plant-specific endoplasmic reticulum stress-inducible gene TIN1 in the formation of pollen surface structure in Arabidopsis thaliana

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Toward Ecologically Relevant Genetics of Interactions Between Host Plants and Plant Growth‐Promoting Bacteria

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Heat stress and viral infection elicit a specific and differential gene response in thermo-tolerant and thermo-susceptible tomato plants

inferred← citeshttps://doi.org/10.1101/2022.09.19.508615openalex-snapshot

The genetic architecture of Arabidopsis thaliana in response to native non-pathogenic leaf bacterial species revealed by GWA mapping in field conditions

inferred← citeshttps://doi.org/10.3389/fpls.2023.1266032openalex-snapshot

Genetic architecture of the response of Arabidopsis thaliana to a native plant-growth-promoting bacterial strain

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