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Single nucleus multi-omics regulatory atlas of the murine pituitary

https://doi.org/10.1101/2020.06.06.138024

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Single-cell transcriptomic analysis of adult mouse pituitary reveals sexual dimorphism and physiologic demand-induced cellular plasticity

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Mouse Models of Gonadotrope Development

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A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility

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Comprehensive Integration of Single-Cell Data

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Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data

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Single-cell ATAC-Seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures

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Single nucleus multi-omics identifies human cortical cell regulatory genome diversity

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Sexually dimorphic gene expression in the hypothalamus, pituitary gland, and cortex

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Heterogeneity of growth hormone (GH)-producing cells in aging male rats: in vitro GH releasing activity of somatotrope subpopulations

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Two SNPs Associated With Spontaneous Dizygotic Twinning: Effect Sizes and How We Communicate Them

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Single-cell chromatin accessibility reveals principles of regulatory variation

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Integrating single-cell transcriptomic data across different conditions, technologies, and species

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Dimensionality reduction for visualizing single-cell data using UMAP

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Nuclear RNA-seq of single neurons reveals molecular signatures of activation

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Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism

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Causal mechanisms and balancing selection inferred from genetic associations with polycystic ovary syndrome

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Massively parallel single-nucleus RNA-seq with DroNc-seq

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Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations

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SCENIC: single-cell regulatory network inference and clustering

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GREB1 is an estrogen receptor-regulated tumour promoter that is frequently expressed in ovarian cancer

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Robust single-cell DNA methylome profiling with snmC-seq2

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Single-cell transcriptomic analysis of Alzheimer’s disease

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Benchmarking single-cell RNA-sequencing protocols for cell atlas projects

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Single-cell and single-molecule epigenomics to uncover genome regulation at unprecedented resolution

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Pathway-level information extractor (PLIER) for gene expression data

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Simultaneous profiling of 3D genome structure and DNA methylation in single human cells

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Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation

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Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation

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Singular value decomposition for genome-wide expression data processing and modeling

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Regulation of GREB1 Transcription by Estrogen Receptor α through a Multipartite Enhancer Spread Over 20 kb of Upstream Flanking Sequences

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SMAD3 Regulates Follicle-stimulating Hormone Synthesis by Pituitary Gonadotrope Cells in Vivo

inferredcites →https://doi.org/10.1093/hmg/ddy317openalex-snapshot

Large-scale meta-analysis highlights the hypothalamic–pituitary–gonadal axis in the genetic regulation of menstrual cycle length

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IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq

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Single-cell stabilization method identifies gonadotrope transcriptional dynamics and pituitary cell type heterogeneity

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Follicle‐stimulating hormone synthesis and fertility depend on SMAD4 and FOXL2

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The nuclear receptor steroidogenic factor 1 acts at multiple levels of the reproductive axis.

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Detection of nonneutral substitution rates on mammalian phylogenies

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

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Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain

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Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex

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Single-cell epigenomics: powerful new methods for understanding gene regulation and cell identity

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Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows

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Somatostatin increases growth hormone (GH) secretion in a subpopulation of porcine somatotropes: evidence for functional and morphological heterogeneity among porcine GH-producing cells

inferredcites →https://doi.org/10.1210/en.2002-220556openalex-snapshot

Sexually Dimorphic Expression of Corticotropin-Releasing Hormone-Binding Protein in the Mouse Pituitary

inferredcites →https://doi.org/10.1210/en.2018-00750openalex-snapshot

Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell Types

inferredcites →https://doi.org/10.1210/endo-120-5-1936openalex-snapshot

Existence of Somatotrope Subpopulations which are Differentially Responsive to Insulin-Like Growth Factor I and Somatostatin*

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Steroid and pulsatile gonadotropin-releasing hormone (GnRH) regulation of luteinizing hormone and GnRH receptor in a novel gonadotrope cell line

inferredcites →https://doi.org/10.1210/me.2011-0093openalex-snapshot

Impaired FSHβ Expression in the Pituitaries of Foxl2 Mutant Animals

inferredcites →https://doi.org/10.1210/me.2012-1286openalex-snapshot

Impaired Fertility and FSH Synthesis in Gonadotrope-Specific Foxl2 Knockout Mice

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Mapping chromatin modifications at the single cell level

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Single-nucleus and single-cell transcriptomes compared in matched cortical cell types

inferredcites →https://doi.org/10.1677/joe.0.162r001openalex-snapshot

LbetaT2 gonadotroph cells secrete follicle stimulating hormone (FSH) in response to active A

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Advantages of Single-Nucleus over Single-Cell RNA Sequencing of Adult Kidney: Rare Cell Types and Novel Cell States Revealed in Fibrosis

inferredcites →https://doi.org/10.3389/fcell.2018.00108openalex-snapshot

Experimental Considerations for Single-Cell RNA Sequencing Approaches

inferredcites →https://doi.org/10.3389/fendo.2019.00623openalex-snapshot

Cell Type- and Sex-Dependent Transcriptome Profiles of Rat Anterior Pituitary Cells

inferredcites →https://doi.org/10.3892/mmr.2017.7398openalex-snapshot

The role of gene polymorphisms in endometriosis

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/b978-0-12-819801-8.00001-6openalex-snapshot

Endocrinology of a Single Cell: Tools and Insights

inferred← citeshttps://doi.org/10.1016/j.ecl.2020.10.006openalex-snapshot

Genetics of Polycystic Ovary Syndrome

inferred← citeshttps://doi.org/10.1038/s41467-021-22859-wopenalex-snapshot

Single nucleus multi-omics regulatory landscape of the murine pituitary

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