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Complete Chloroplast Genomes of Saccharum giganteum , Saccharum longisetosum , Cleistachne sorghoides, Sarga timorense, Narenga porphyrocoma and Tripsacum dactyloides . Comparisons with ITS phylogeny and Placement within Saccharum

https://doi.org/10.1101/2020.06.12.149476

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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IOPB CHROMOSOME NUMBER REPORTS LIV

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Complete Sequence of the Maize Chloroplast Genome: Gene Content, Hotspots of Divergence and Fine Tuning of Genetic Information by Transcript Editing

inferredcites →https://doi.org/10.1007/978-1-4419-5947-8openalex-snapshot

Genomics of the Saccharinae

inferredcites →https://doi.org/10.1007/978-1-4419-5947-8_1openalex-snapshot

Phylogenetic Relationships of Saccharinae and Sorghinae

inferredcites →https://doi.org/10.1007/bf00145639openalex-snapshot

Cytogenetic analyses of sugarcane relatives (Andropogoneae: Saccharinae)

inferredcites →https://doi.org/10.1007/s10265-002-0049-3openalex-snapshot

Phylogenetics of Miscanthus , Saccharum and related genera (Saccharinae, Andropogoneae, Poaceae) based on DNA sequences from ITS nuclear ribosomal DNA and plastid trnL intron and trnL-F intergenic spacers

inferredcites →https://doi.org/10.1016/j.ympev.2014.04.021openalex-snapshot

The phylogeography of Eurasian Fraxinus species reveals ancient transcontinental reticulation

inferredcites →https://doi.org/10.1016/j.ympev.2016.04.017openalex-snapshot

Hybridization among distantly related species: Examples from the polyploid genus Curcuma (Zingiberaceae)

inferredcites →https://doi.org/10.1016/s1055-7903(03)00208-2openalex-snapshot

Ribosomal ITS sequences and plant phylogenetic inference

inferredcites →https://doi.org/10.1023/a:1006133804170openalex-snapshot

Quantitative chromosome map of the polyploid Saccharum spontaneum by multicolor fluorescence in situ hybridization and imaging methods

inferredcites →https://doi.org/10.1038/ncomms5956openalex-snapshot

Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times

inferredcites →https://doi.org/10.1038/nmeth.2109openalex-snapshot

jModelTest 2: more models, new heuristics and parallel computing

inferredcites →https://doi.org/10.1038/s41598-018-20399-wopenalex-snapshot

Plastid super-barcodes as a tool for species discrimination in feather grasses (Poaceae: Stipa)

inferredcites →https://doi.org/10.1073/pnas.1404177111openalex-snapshot

Allopolyploidy, diversification, and the Miocene grassland expansion

inferredcites →https://doi.org/10.1080/00087114.1984.10797713openalex-snapshot

Cytology ofSaccharumComplex from new Guinea, Indonesia and India

inferredcites →https://doi.org/10.1080/0028825x.2004.9512930openalex-snapshot

Flora of New Zealand ‐ Gramineae supplement I: Danthonioideae

inferredcites →https://doi.org/10.1080/14772000.2016.1197336openalex-snapshot

Complete chloroplast genomes of Saccharum spontaneum, Saccharum officinarum and Miscanthus floridulus (Panicoideae: Andropogoneae) reveal the plastid view on sugarcane origins

inferredcites →https://doi.org/10.1086/335962openalex-snapshot

Origin and Distribution of Saccharum

inferredcites →https://doi.org/10.1093/aob/mci015openalex-snapshot

Genome Evolution in the Genus Sorghum (Poaceae)

inferredcites →https://doi.org/10.1093/aob/mct174openalex-snapshot

Phylogenomics and taxonomy of Lecomtelleae (Poaceae), an isolated panicoid lineage from Madagascar

inferredcites →https://doi.org/10.1093/aob/mcv097openalex-snapshot

Phylogenetic reconstruction using four low-copy nuclear loci strongly supports a polyphyletic origin of the genusSorghum

inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot

MrBayes 3: Bayesian phylogenetic inference under mixed models

inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

inferredcites →https://doi.org/10.1093/bioinformatics/btm388openalex-snapshot

AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics

inferredcites →https://doi.org/10.1093/bioinformatics/btq228openalex-snapshot

DendroPy: a Python library for phylogenetic computing

inferredcites →https://doi.org/10.1093/bioinformatics/bts198openalex-snapshot

Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm

inferredcites →https://doi.org/10.1093/gbe/evz256openalex-snapshot

Long-reads reveal that the chloroplast genome exists in two distinct versions in most plants

inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

inferredcites →https://doi.org/10.1093/nar/25.17.3478openalex-snapshot

Nucleoprotein complex formation by the enhancer binding protein nifA

inferredcites →https://doi.org/10.1093/oxfordjournals.jhered.a109911openalex-snapshot

Karyotype analysis of seven species in the genus Sorghum

inferredcites →https://doi.org/10.1093/sysbio/syw083openalex-snapshot

Ancestral Gene Flow and Parallel Organellar Genome Capture Result in Extreme Phylogenomic Discord in a Lineage of Angiosperms

inferredcites →https://doi.org/10.1126/science.1171243openalex-snapshot

Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees

inferredcites →https://doi.org/10.1139/g00-059openalex-snapshot

Molecular contribution to selection of intergeneric hybrids between sugarcane and the wild species Erianthus arundinaceus

inferredcites →https://doi.org/10.1139/gen-43-6-1033openalex-snapshot

Molecular contribution to selection of intergeneric hybrids between sugarcane and the wild species Erianthus arundinaceus

inferredcites →https://doi.org/10.1186/1471-2105-13-134openalex-snapshot

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

inferredcites →https://doi.org/10.1186/s12862-019-1356-9openalex-snapshot

Whole chloroplast genome and gene locus phylogenies reveal the taxonomic placement and relationship of Tripidium (Panicoideae: Andropogoneae) to sugarcane

inferredcites →https://doi.org/10.1371/journal.pone.0033821openalex-snapshot

High Resolution Genetic Mapping by Genome Sequencing Reveals Genome Duplication and Tetraploid Genetic Structure of the Diploid Miscanthus sinensis

inferredcites →https://doi.org/10.1508/cytologia.23.395openalex-snapshot

Cytotaxonomy of the Andropogoneae

inferredcites →https://doi.org/10.1508/cytologia.24.220openalex-snapshot

Cytological Studies of Sugarcane and its Relatives

inferredcites →https://doi.org/10.2307/2419662openalex-snapshot

When Genes Tell Different Stories: The Diploid Genera of Triticeae (Gramineae)

inferredcites →https://doi.org/10.3389/fbioe.2018.00072openalex-snapshot

Assessing the Likelihood of Gene Flow From Sugarcane (Saccharum Hybrids) to Wild Relatives in South Africa

inferredcites →https://doi.org/10.3389/fphar.2018.00695openalex-snapshot

Identification of Ligularia Herbs Using the Complete Chloroplast Genome as a Super-Barcode

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/2020.06.28.175893openalex-snapshot

Assembly of 23 Plastid Genomes Provides the Chloroplast View on Miscanthus Origins

inferred← citeshttps://doi.org/10.1101/2020.07.29.226753openalex-snapshot

On the Validity of the Saccharum Complex and the Saccharinae Subtribe: A Re-assesment

inferred← citeshttps://doi.org/10.1101/2020.07.29.226852openalex-snapshot

Origins, History and Molecular Characterization of Creole Cane

inferred← citeshttps://doi.org/10.3390/ijms23147661openalex-snapshot

Comparative Analysis of Chloroplast Genome in Saccharum spp. and Related Members of ‘Saccharum Complex’

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