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The legacy of recurrent introgression during the radiation of hares

https://doi.org/10.1101/2020.06.19.160283

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Northern Host–Parasite Assemblages

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ADAPTATIONS TO ENVIRONMENT

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A Combinatorial View on Speciation and Adaptive Radiation

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Evidence for genetic similarity of two allopatric European hares (Lepus corsicanus and L. castroviejoi) inferred from nuclear DNA sequences

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DiscoVista: Interpretable visualizations of gene tree discordance

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inferredcites →https://doi.org/10.1126/science.aar5273openalex-snapshot

Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares

inferredcites →https://doi.org/10.1126/science.aaw2090openalex-snapshot

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inferredcites →https://doi.org/10.1139/as-2016-0042openalex-snapshot

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inferredcites →https://doi.org/10.1139/z65-077openalex-snapshot

SEASONAL ACCLIMATIZATION IN VARYING HARE (LEPUS AMERICANUS)

inferredcites →https://doi.org/10.1186/1471-2148-11-223openalex-snapshot

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The genomic impact of historical hybridization with massive mitochondrial DNA introgression

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treeman: an R package for efficient and intuitive manipulation of phylogenetic trees

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Molecular phylogeny of Japanese Leporidae, the Amami rabbit Pentalagus furnessi, the Japanese hare Lepus brachyurus, and the mountain hare Lepus timidus, inferred from mitochondrial DNA sequences.

inferredcites →https://doi.org/10.1371/journal.pbio.3000954openalex-snapshot

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inferredcites →https://doi.org/10.1371/journal.pgen.1002660openalex-snapshot

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inferredcites →https://doi.org/10.1371/journal.pgen.1002967openalex-snapshot

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inferredcites →https://doi.org/10.1371/journal.pone.0059668openalex-snapshot

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inferredcites →https://doi.org/10.1371/journal.pone.0180137openalex-snapshot

Mitochondrial and nuclear DNA reveals reticulate evolution in hares (Lepus spp., Lagomorpha, Mammalia) from Ethiopia

inferredcites →https://doi.org/10.1371/journal.pone.0191790openalex-snapshot

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inferredcites →https://doi.org/10.1644/08-mamm-a-247r.1openalex-snapshot

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inferredcites →https://doi.org/10.2307/1374046openalex-snapshot

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inferredcites →https://doi.org/10.2307/1377162openalex-snapshot

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inferredcites →https://doi.org/10.2307/1377217openalex-snapshot

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inferredcites →https://doi.org/10.2307/1381937openalex-snapshot

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inferredcites →https://doi.org/10.4159/harvard.9780674865327openalex-snapshot

Animal Species and Evolution

inferredcites →https://doi.org/10.5281/zenodo.13503167openalex-snapshot

Lagomorphs: pikas, rabbits, and hares of the world

inferredcites →https://doi.org/10.5860/choice.46-0290openalex-snapshot

Lagomorph biology: evolution, ecology, and conservation

inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot

Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

inferredcites →https://doi.org/10.7717/peerj.1660openalex-snapshot

AMAS: a fast tool for alignment manipulation and computing of summary statistics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/evl3.301openalex-snapshot

Divergence and introgression among the virilis group of Drosophila

inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107313openalex-snapshot

Genome-wide data reveal extensive gene flow during the diversification of the western rattlesnakes (Viperidae: Crotalinae: Crotalus)

inferred← citeshttps://doi.org/10.1038/s41559-023-02094-wopenalex-snapshot

North African fox genomes show signatures of repeated introgression and adaptation to life in deserts

inferred← citeshttps://doi.org/10.1093/oso/9780192898166.001.0001openalex-snapshot

Conservation of Wildlife Populations

inferred← citeshttps://doi.org/10.1093/oso/9780192898166.002.0003openalex-snapshot

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Dedication

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List of Figures

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List of Boxes

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List of Symbols

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Preface to Third Edition

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Preface to Second Edition

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Preface to First Edition

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Epilogue

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Credits for Epigraphs

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The big picture

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Gaining reliable knowledge

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Genetic concepts and tools to support wildlife population ecology

inferred← citeshttps://doi.org/10.1093/oso/9780192898166.003.0004openalex-snapshot

Estimating population size and vital rates

inferred← citeshttps://doi.org/10.1093/oso/9780192898166.003.0005openalex-snapshot

Exponential (or geometric) change

inferred← citeshttps://doi.org/10.1093/oso/9780192898166.003.0006openalex-snapshot

All stage classes are not equal in their effects on population growth

inferred← citeshttps://doi.org/10.1093/oso/9780192898166.003.0007openalex-snapshot

Density-dependent population change

inferred← citeshttps://doi.org/10.1093/oso/9780192898166.003.0008openalex-snapshot

Predation and wildlife populations

inferred← citeshttps://doi.org/10.1093/oso/9780192898166.003.0009openalex-snapshot

Genetic variation and fitness of wildlife populations

inferred← citeshttps://doi.org/10.1093/oso/9780192898166.003.0010openalex-snapshot

Dynamics of multiple populations

inferred← citeshttps://doi.org/10.1093/oso/9780192898166.003.0011openalex-snapshot

Population responses to human-caused stressors: Move, adjust, or die

inferred← citeshttps://doi.org/10.1093/oso/9780192898166.003.0012openalex-snapshot

Dynamics of small and declining populations

inferred← citeshttps://doi.org/10.1093/oso/9780192898166.003.0013openalex-snapshot

Sustainable harvest principles, models, and best practices

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Diversification, Introgression, and Rampant Cytonuclear Discordance in Rocky Mountains Chipmunks (Sciuridae: Tamias)

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Understanding natural selection and similarity: Convergent, parallel and repeated evolution

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