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Analysis of the small chromosomal Prionium serratum (Cyperid) demonstrates the importance of a reliable method to differentiate between mono- and holocentricity

https://doi.org/10.1101/2020.07.08.193714

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/jez.1400870306openalex-snapshot

The diffuse spindle attachment of coccids, verified by the mitotic behavior of induced chromosome fragments

inferredcites →https://doi.org/10.1006/anbo.1998.0779openalex-snapshot

Repetitive DNA Elements as a Major Component of Plant Genomes

inferredcites →https://doi.org/10.1006/bojl.2000.0387openalex-snapshot

A new western Mediterranean species of Cuscuta (Convolvulaceae) confirms the presence of holocentric chromosomes in subgenus Cuscuta

inferredcites →https://doi.org/10.1007/bf00285757openalex-snapshot

The ultrastructure of meiotic kinetochores of Luzula

inferredcites →https://doi.org/10.1007/bf00328466openalex-snapshot

In situ hybridization confirms jumping nucleolus organizing regions in Allium

inferredcites →https://doi.org/10.1007/bf00328478openalex-snapshot

The ultrastructure of the diffuse kinetochore in Luzula nivea

inferredcites →https://doi.org/10.1007/bf00328928openalex-snapshot

The kinetochore of the hemiptera

inferredcites →https://doi.org/10.1007/bf00331804openalex-snapshot

Cytological evidence for holocentric chromosomes of the silkworms, Bombyx mori and B. mandarina, (Bombycidae, Lepidoptera)

inferredcites →https://doi.org/10.1007/s00412-007-0102-zopenalex-snapshot

CENH3 interacts with the centromeric retrotransposon cereba and GC-rich satellites and locates to centromeric substructures in barley

inferredcites →https://doi.org/10.1007/s00412-015-0521-1openalex-snapshot

The ultrastructure of mono- and holocentric plant centromeres: an immunological investigation by structured illumination microscopy and scanning electron microscopy

inferredcites →https://doi.org/10.1007/s00412-015-0524-yopenalex-snapshot

Holokinetic centromeres and efficient telomere healing enable rapid karyotype evolution

inferredcites →https://doi.org/10.1007/s00412-016-0612-7openalex-snapshot

Holocentromere identity: from the typical mitotic linear structure to the great plasticity of meiotic holocentromeres

inferredcites →https://doi.org/10.1007/s00412-016-0616-3openalex-snapshot

Centromeric and non-centromeric satellite DNA organisation differs in holocentric Rhynchospora species

inferredcites →https://doi.org/10.1007/s004120100132openalex-snapshot

Chromatin organization and its relation to replication and histone acetylation during the cell cycle in barley

inferredcites →https://doi.org/10.1007/s00606-020-01681-9openalex-snapshot

Comparative floral morphology and anatomy of Thurniaceae, an early-diverging family in the cyperids (Poales, Monocotyledons)

inferredcites →https://doi.org/10.1007/s10577-012-9292-1openalex-snapshot

Holocentric chromosomes: convergent evolution, meiotic adaptations, and genomic analysis

inferredcites →https://doi.org/10.1007/s10577-015-9466-8openalex-snapshot

The differential loading of two barley CENH3 variants into distinct centromeric substructures is cell type- and development-specific

inferredcites →https://doi.org/10.1007/s10577-017-9566-8openalex-snapshot

Do holocentric chromosomes represent an evolutionary advantage? A study of paired analyses of diversification rates of lineages with holocentric chromosomes and their monocentric closest relatives

inferredcites →https://doi.org/10.1007/s10709-009-9424-5openalex-snapshot

Evolutionary dynamics of rDNA clusters on chromosomes of moths and butterflies (Lepidoptera)

inferredcites →https://doi.org/10.1007/s11103-015-0364-4openalex-snapshot

Defining multiple, distinct, and shared spatiotemporal patterns of DNA replication and endoreduplication from 3D image analysis of developing maize (Zea mays L.) root tip nuclei

inferredcites →https://doi.org/10.1007/s12229-018-9202-0openalex-snapshot

Phylogeny and Systematics of Cyperaceae, the Evolution and Importance of Embryo Morphology

inferredcites →https://doi.org/10.1016/j.plantsci.2011.04.020openalex-snapshot

Progress in understanding DNA replication control

inferredcites →https://doi.org/10.1023/a:1018493419208openalex-snapshot

Meiotic behaviour of holocentric chromosomes: orientation and segregation of autosomes in Triatoma infestans (Heteroptera)

inferredcites →https://doi.org/10.1038/ncomms5979openalex-snapshot

Alternative meiotic chromatid segregation in the holocentric plant Luzula elegans

inferredcites →https://doi.org/10.1038/ncomms6070openalex-snapshot

Chiasmatic and achiasmatic inverted meiosis of plants with holocentric chromosomes

inferredcites →https://doi.org/10.1038/nrg2466openalex-snapshot

Epigenetic regulation of centromeric chromatin: old dogs, new tricks?

inferredcites →https://doi.org/10.1038/srep27161openalex-snapshot

Flow cytometry may allow microscope-independent detection of holocentric chromosomes in plants

inferredcites →https://doi.org/10.1046/j.1365-313x.1991.00159.xopenalex-snapshot

Localization of tandemly repeated DNA sequences in Arabidopsis thaliana

inferredcites →https://doi.org/10.1073/pnas.1321152111openalex-snapshot

Ecological and evolutionary significance of genomic GC content diversity in monocots

inferredcites →https://doi.org/10.1073/pnas.1512255112openalex-snapshot

Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin

inferredcites →https://doi.org/10.1083/jcb.153.6.f33openalex-snapshot

Here, There, and Everywhere

inferredcites →https://doi.org/10.1093/aob/mcx118openalex-snapshot

Holocentric chromosomes: from tolerance to fragmentation to colonization of the land

inferredcites →https://doi.org/10.1093/bioinformatics/btl158openalex-snapshot

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

inferredcites →https://doi.org/10.1093/bioinformatics/btl529openalex-snapshot

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

inferredcites →https://doi.org/10.1093/bioinformatics/bts565openalex-snapshot

CD-HIT: accelerated for clustering the next-generation sequencing data

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/botlinnean/boz065openalex-snapshot

Monocentric chromosomes in Juncus (Juncaceae) and implications for the chromosome evolution of the family

inferredcites →https://doi.org/10.1093/hesc/9781605353890.001.0001openalex-snapshot

Plant Systematics

inferredcites →https://doi.org/10.1093/molbev/msy096openalex-snapshot

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

inferredcites →https://doi.org/10.1093/nar/22.22.4673openalex-snapshot

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

inferredcites →https://doi.org/10.1093/nar/gkw256openalex-snapshot

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

inferredcites →https://doi.org/10.1101/gr.196469.115openalex-snapshot

TransRate: reference-free quality assessment of de novo transcriptome assemblies

inferredcites →https://doi.org/10.1105/tpc.003079openalex-snapshot

Functional Rice Centromeres Are Marked by a Satellite Repeat and a Centromere-Specific Retrotransposon

inferredcites →https://doi.org/10.1105/tpc.105.032961openalex-snapshot

Visualization of Diffuse Centromeres with Centromere-Specific Histone H3 in the Holocentric Plant Luzula nivea

inferredcites →https://doi.org/10.1111/j.1365-313x.2012.05029.xopenalex-snapshot

Phosphorylation of histone H2A is associated with centromere function and maintenance in meiosis

inferredcites →https://doi.org/10.1111/j.1601-5223.1962.tb01828.xopenalex-snapshot

STUDIES OF MEIOSIS IN LUZULA PURPUREA

inferredcites →https://doi.org/10.1111/tpj.12054openalex-snapshot

The holocentric species L uzula elegans shows interplay between centromere and large‐scale genome organization

inferredcites →https://doi.org/10.1111/tpj.13254openalex-snapshot

Analysis of transposable elements and organellar DNA in male and female genomes of a species with a huge Y chromosome reveals distinct Y centromeres

inferredcites →https://doi.org/10.1111/tpj.14705openalex-snapshot

Satellite DNA landscapes after allotetraploidization of quinoa ( Chenopodium quinoa ) reveal unique A and B subgenomes

inferredcites →https://doi.org/10.1159/000074175openalex-snapshot

The temporal and spatial pattern of histone H3 phosphorylation at serine 28 and serine 10 is similar in plants but differs between mono- and polycentric chromosomes

inferredcites →https://doi.org/10.1159/000327713openalex-snapshot

Holocentric Chromosomes of Luzula elegans Are Characterized by a Longitudinal Centromere Groove, Chromosome Bending, and a Terminal Nucleolus Organizer Region

inferredcites →https://doi.org/10.1159/000360018openalex-snapshot

Anti-Phosphorylated Histone H2AThr120: A Universal Microscopic Marker for Centromeric Chromatin of Mono- and Holocentric Plant Species

inferredcites →https://doi.org/10.1159/000437008openalex-snapshot

Satellite DNA in Plants: More than Just Rubbish

inferredcites →https://doi.org/10.1186/1471-2148-12-225openalex-snapshot

Distribution of 45S rDNA sites in chromosomes of plants: Structural and evolutionary implications

inferredcites →https://doi.org/10.1242/jcs.202416openalex-snapshot

Replication of ribosomal DNA in Arabidopsis occurs both inside and outside the nucleolus during S phase progression

inferredcites →https://doi.org/10.12705/673.5openalex-snapshot

Nuclear genes, matK and the phylogeny of the Poales

inferredcites →https://doi.org/10.1364/aop.7.000241openalex-snapshot

Structured illumination microscopy

inferredcites →https://doi.org/10.1508/cytologia.42.753openalex-snapshot

Chromosome Studies in Chionographis (Liliaceae)

inferredcites →https://doi.org/10.1508/cytologia.44.935openalex-snapshot

Chromosome Studies in Chionographis (Liliaceae)

inferredcites →https://doi.org/10.1508/cytologia.60.43openalex-snapshot

Study on Diffused Centromeric Nature of Drosera Chromosomes.

inferredcites →https://doi.org/10.1534/genetics.116.191213openalex-snapshot

Restructuring of Holocentric Centromeres During Meiosis in the Plant Rhynchospora pubera

inferredcites →https://doi.org/10.1600/036364416x692442openalex-snapshot

The Phylogenetic Origins and Evolutionary History of Holocentric Chromosomes

inferredcites →https://doi.org/10.21769/bioprotoc.1725openalex-snapshot

Structured Illumination Microscopy (SIM) and Photoactivated Localization Microscopy (PALM) to Analyze the Abundance and Distribution of RNA Polymerase II Molecules on Flow-sorted Arabidopsis Nuclei

inferredcites →https://doi.org/10.3389/fpls.2015.00913openalex-snapshot

Atypical centromeres in plants—what they can tell us

inferredcites →https://doi.org/10.3389/fpls.2019.01170openalex-snapshot

Together But Different: The Subgenomes of the Bimodal Eleutherine Karyotypes Are Differentially Organized

inferredcites →https://doi.org/10.3389/fpls.2019.01799openalex-snapshot

Mitotic Spindle Attachment to the Holocentric Chromosomes of Cuscuta europaea Does Not Correlate With the Distribution of CENH3 Chromatin

inferredcites →https://doi.org/10.3390/ijms21103488openalex-snapshot

Super-Resolution Microscopy Reveals Diversity of Plant Centromere Architecture

inferredcites →https://doi.org/10.7554/elife.03676openalex-snapshot

Recurrent loss of CenH3 is associated with independent transitions to holocentricity in insects

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3389/fpls.2020.536507openalex-snapshot

Holocentric Karyotype Evolution in Rhynchospora Is Marked by Intense Numerical, Structural, and Genome Size Changes

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