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The basic reproduction number of SARS-CoV-2: a scoping review of available evidence

https://doi.org/10.1101/2020.07.28.20163535

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Early phylogenetic estimate of the effective reproduction number of SARS‐CoV‐2

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The Effective Reproduction Number as a Prelude to Statistical Estimation of Time-Dependent Epidemic Trends

inferredcites →https://doi.org/10.1007/bf00178324openalex-snapshot

On the definition and the computation of the basic reproduction ratio R 0 in models for infectious diseases in heterogeneous populations

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Bluff your way in epidemic models

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Measurement and Modeling: Infectious Disease Modeling

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Measurement and Modeling: Infectious Disease Modeling

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Modeling the dynamics of novel coronavirus (2019-nCov) with fractional derivative

inferredcites →https://doi.org/10.1016/j.epidem.2018.12.002openalex-snapshot

A practical generation-interval-based approach to inferring the strength of epidemics from their speed

inferredcites →https://doi.org/10.1016/j.epidem.2019.100356openalex-snapshot

Improved inference of time-varying reproduction numbers during infectious disease outbreaks

inferredcites →https://doi.org/10.1016/j.epidem.2021.100528openalex-snapshot

The early phase of the COVID-19 epidemic in Lombardy, Italy

inferredcites →https://doi.org/10.1016/j.ijheh.2020.113555openalex-snapshot

Estimation of the Time-Varying Reproduction Number of COVID-19 Outbreak in China

inferredcites →https://doi.org/10.1016/j.ijid.2020.01.050openalex-snapshot

Preliminary estimation of the basic reproduction number of novel coronavirus (2019-nCoV) in China, from 2019 to 2020: A data-driven analysis in the early phase of the outbreak

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Estimation of the reproductive number of novel coronavirus (COVID-19) and the probable outbreak size on the Diamond Princess cruise ship: A data-driven analysis

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Transmission potential and severity of COVID-19 in South Korea

inferredcites →https://doi.org/10.1016/j.ijid.2020.04.044openalex-snapshot

Preliminary estimates of the reproduction number of the coronavirus disease (COVID-19) outbreak in Republic of Korea and Italy by 5 March 2020

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A tutorial introduction to Bayesian inference for stochastic epidemic models using Markov chain Monte Carlo methods

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Nowcasting and forecasting the potential domestic and international spread of the 2019-nCoV outbreak originating in Wuhan, China: a modelling study

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Superspreading and the effect of individual variation on disease emergence

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The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2

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Estimating clinical severity of COVID-19 from the transmission dynamics in Wuhan, China

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Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia

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Growth of small diameter multi-walled carbon nanotubes by arc discharge process

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On Parametric Estimation for Mortal Branching Processes

inferredcites →https://doi.org/10.1093/jtm/taaa077openalex-snapshot

Epidemic curve and reproduction number of COVID-19 in Iran

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Infectious Diseases of Humans

inferredcites →https://doi.org/10.1098/rsif.2011.0379openalex-snapshot

Methods to infer transmission risk factors in complex outbreak data

inferredcites →https://doi.org/10.1098/rsif.2016.0659openalex-snapshot

Characterizing the reproduction number of epidemics with early subexponential growth dynamics

inferredcites →https://doi.org/10.1098/rspb.2006.3754openalex-snapshot

How generation intervals shape the relationship between growth rates and reproductive numbers

inferredcites →https://doi.org/10.1098/rstb.2020.0265openalex-snapshot

Novel coronavirus 2019-nCoV (COVID-19): early estimation of epidemiological parameters and epidemic size estimates

inferredcites →https://doi.org/10.1101/2020.01.25.919787openalex-snapshot

Time-varying transmission dynamics of Novel Coronavirus Pneumonia in China

inferredcites →https://doi.org/10.1101/2020.01.30.20019828openalex-snapshot

Modelling the epidemic trend of the 2019-nCOV outbreak in Hubei Province, China

inferredcites →https://doi.org/10.1101/2020.02.26.20028431openalex-snapshot

Transmission characteristics of the COVID-19 outbreak in China: a study driven by data

inferredcites →https://doi.org/10.1101/2020.03.08.20032854openalex-snapshot

A deterministic epidemic model for the emergence of COVID-19 in China

inferredcites →https://doi.org/10.1101/2020.03.30.20047019openalex-snapshot

Early behavior of Madrid Covid-19 disease outbreak: A mathematical model

inferredcites →https://doi.org/10.1101/2020.05.12.20099473openalex-snapshot

Country differences in hospitalisation, length of stay, admission to Intensive Care Units, and mortality due to SARS-CoV-2 infection at the end of the first wave in Europe: a rapid review of available literature

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Host‐parasite population dynamics under combined frequency‐ and density‐dependent transmission

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Transmission Dynamics and Control of Severe Acute Respiratory Syndrome

inferredcites →https://doi.org/10.1126/science.1094442openalex-snapshot

Uses and Abuses of Mathematics in Biology

inferredcites →https://doi.org/10.1136/bmjopen-2020-039652openalex-snapshot

Incubation period of COVID-19: a rapid systematic review and meta-analysis of observational research

inferredcites →https://doi.org/10.1136/bmjopen-2020-039856openalex-snapshot

Inferred duration of infectious period of SARS-CoV-2: rapid scoping review and analysis of available evidence for asymptomatic and symptomatic COVID-19 cases

inferredcites →https://doi.org/10.1136/bmjopen-2020-040263openalex-snapshot

Rapid review of available evidence on the serial interval and generation time of COVID-19

inferredcites →https://doi.org/10.1136/bmjopen-2020-041240openalex-snapshot

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inferredcites →https://doi.org/10.1177/096228029300200103openalex-snapshot

The estimation of the basic reproduction number for infectious diseases

inferredcites →https://doi.org/10.1186/s40249-020-00640-3openalex-snapshot

A mathematical model for simulating the phase-based transmissibility of a novel coronavirus

inferredcites →https://doi.org/10.1239/jap/1222441827openalex-snapshot

Epidemics on Random Graphs with Tunable Clustering

inferredcites →https://doi.org/10.12688/wellcomeopenres.15842.1openalex-snapshot

Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China

inferredcites →https://doi.org/10.2105/ajph.2013.301704openalex-snapshot

Unraveling R0: Considerations for Public Health Applications

inferredcites →https://doi.org/10.2139/ssrn.3524675openalex-snapshot

Early Transmissibility Assessment of a Novel Coronavirus in Wuhan, China

inferredcites →https://doi.org/10.26502/acbr.50170187openalex-snapshot

Identification of a Super-Spreading Chain of Transmission Associated with COVID-19 at the Early Stage of the Disease Outbreak in Wuhan

inferredcites →https://doi.org/10.2807/1560-7917.es.2020.25.4.2000058openalex-snapshot

Pattern of early human-to-human transmission of Wuhan 2019 novel coronavirus (2019-nCoV), December 2019 to January 2020

inferredcites →https://doi.org/10.3201/eid2501.171901openalex-snapshot

Complexity of the Basic Reproduction Number (R 0 )

inferredcites →https://doi.org/10.3201/eid2606.200357openalex-snapshot

Serial Interval of COVID-19 among Publicly Reported Confirmed Cases

inferredcites →https://doi.org/10.3201/eid2607.200282openalex-snapshot

High Contagiousness and Rapid Spread of Severe Acute Respiratory Syndrome Coronavirus 2

inferredcites →https://doi.org/10.3201/eid2608.200536openalex-snapshot

Severe Acute Respiratory Syndrome Coronavirus 2 Transmission Potential, Iran, 2020

inferredcites →https://doi.org/10.3389/fmed.2020.00169openalex-snapshot

Extended SIR Prediction of the Epidemics Trend of COVID-19 in Italy and Compared With Hunan, China

inferredcites →https://doi.org/10.3389/fpubh.2020.00256openalex-snapshot

COVID-19 UK Lockdown Forecasts and R0

inferredcites →https://doi.org/10.3390/biology9050097openalex-snapshot

Using early data to estimate the actual infection fatality ratio from COVID-19 in France (Running title: Infection fatality ratio from COVID-19)

inferredcites →https://doi.org/10.3390/ijerph7031204openalex-snapshot

Branching Processes: Their Role in Epidemiology

inferredcites →https://doi.org/10.3390/jcm9020462openalex-snapshot

Estimation of the Transmission Risk of the 2019-nCoV and Its Implication for Public Health Interventions

inferredcites →https://doi.org/10.4414/smw.2020.20212openalex-snapshot

Preliminary case report on the SARS-CoV-2 cluster in the UK, France, and Spain

inferredcites →https://doi.org/10.48550/arxiv.2003.09320openalex-snapshot

The early phase of the COVID-19 outbreak in Lombardy, Italy

inferredcites →https://doi.org/10.48550/arxiv.2003.10720openalex-snapshot

Using early data to estimate the actual infection fatality ratio from COVID-19 in France (Running title: Infection fatality ratio from COVID-19)

inferredcites →https://doi.org/10.7326/0003-4819-117-2-174_4openalex-snapshot

Infectious Diseases of Humans: Dynamics and Control

inferredcites →https://doi.org/10.7326/m18-0850openalex-snapshot

PRISMA Extension for Scoping Reviews (PRISMA-ScR): Checklist and Explanation

inferredcites →https://doi.org/10.7554/elife.57149openalex-snapshot

Evidence for transmission of COVID-19 prior to symptom onset

inferredcites →https://doi.org/10.7759/cureus.9884openalex-snapshot

Modeling the Epidemiological Trend and Behavior of COVID-19 in Italy

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.tpb.2020.12.003openalex-snapshot

What the reproductive number R0 can and cannot tell us about COVID-19 dynamics

inferred← citeshttps://doi.org/10.1038/s41467-020-20699-8openalex-snapshot

The challenges of containing SARS-CoV-2 via test-trace-and-isolate

inferred← citeshttps://doi.org/10.1101/2021.01.20.21250109openalex-snapshot

Numbers of close contacts of individuals infected with SARS-CoV-2 and their association with government intervention strategies

inferred← citeshttps://doi.org/10.1186/s12889-021-12318-yopenalex-snapshot

Numbers of close contacts of individuals infected with SARS-CoV-2 and their association with government intervention strategies

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1010375openalex-snapshot

Consistent pattern of epidemic slowing across many geographies led to longer, flatter initial waves of the COVID-19 pandemic

inferred← citeshttps://doi.org/10.20944/preprints202103.0416.v1openalex-snapshot

Science’s Response to COVID-19

inferred← citeshttps://doi.org/10.31219/osf.io/s9z2popenalex-snapshot

A TALE OF TWO SCIENTIFIC PARADIGMS: CONFLICTING SCIENTIFIC OPINIONS ON WHAT “FOLLOWING THE SCIENCE” MEANS FOR SARS-COV-2 AND THE COVID-19 PANDEMIC

inferred← citeshttps://doi.org/10.3389/fvets.2020.578649openalex-snapshot

Reflecting on One Health in Action During the COVID-19 Response

inferred← citeshttps://doi.org/10.3390/bios12060410openalex-snapshot

Advancements in Testing Strategies for COVID-19

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