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QTL mapping in an interspecific sorghum population uncovers candidate regulators of salinity tolerance

https://doi.org/10.1101/2020.08.05.238972

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Phenotypic and physiological responses to salt exposure in Sorghum reveal diversity among domesticated landraces

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Aquaporin Water Channels (Nobel Lecture)

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Continuum Electrostatic Methods Applied to pH-Dependent Properties of Antibody–Antigen Association

inferredcites →https://doi.org/10.1007/978-0-387-92125-9openalex-snapshot

A Guide to QTL Mapping with R/qtl

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Aquaporins: A Family of Highly Regulated Multifunctional Channels

inferredcites →https://doi.org/10.1007/bf00286684openalex-snapshot

Two genes that encode Ca2+-dependent protein kinases are induced by drought and high-salt stresses in Arabidopsis thaliana

inferredcites →https://doi.org/10.1007/bf00779180openalex-snapshot

A rapid screening technique for salt tolerance in rice (Oryza sativa L.)

inferredcites →https://doi.org/10.1007/s10535-016-0656-9openalex-snapshot

Water use efficiency in the drought-stressed sorghum and maize in relation to expression of aquaporin genes

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Mapping of quantitative trait loci for seedling salt tolerance in maize

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Energy dissipation and antioxidant enzyme system protect photosystem II of sweet sorghum under drought stress

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Whole Gene Family Expression and Drought Stress Regulation of Aquaporins

inferredcites →https://doi.org/10.1007/s11104-018-3770-yopenalex-snapshot

It is not all about sodium: revealing tissue specificity and signalling roles of potassium in plant responses to salt stress

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Effect of salinity stress on plants and its tolerance strategies: a review

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Sodium (Na+) homeostasis and salt tolerance of plants

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Enhanced root hydraulic conductance by aquaporin regulation accounts for silicon alleviated salt-induced osmotic stress in Sorghum bicolor L

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Cellular and tissue distribution of potassium: Physiological relevance, mechanisms and regulation

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Drought tolerance strategies highlighted by two Sorghum bicolor races in a dry-down experiment

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Physiological functions of mineral macronutrients

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Scavenging of reactive oxygen species in NaCl-stressed rice (Oryza sativa L.)—differential response in salt-tolerant and sensitive varieties

inferredcites →https://doi.org/10.1016/j.plgene.2014.12.002openalex-snapshot

Genome-wide identification and characterization of the aquaporin gene family in Sorghum bicolor (L.)

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Mechanisms of Plant Responses and Adaptation to Soil Salinity

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Potassium Estimation, Uptake, and Its Role in the Physiology and Metabolism of Flowering Plants

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Genetical consequences of single seed descent in the breeding of self-pollinating crops

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Wheat grain yield on saline soils is improved by an ancestral Na+ transporter gene

inferredcites →https://doi.org/10.1042/bj20080275openalex-snapshot

Structure–function analysis of plant aquaporin At PIP2;1 gating by divalent cations and protons

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Calcium signalling in Arabidopsis thaliana responding to drought and salinity

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Genetics and Analysis of Quantitative Traits

inferredcites →https://doi.org/10.1071/ea04162openalex-snapshot

Improving salt tolerance of wheat and barley: future prospects

inferredcites →https://doi.org/10.1071/fp18009openalex-snapshot

Evaluation of salt-tolerant germplasm and screening of the salt-tolerance traits of sweet sorghum in the germination stage

inferredcites →https://doi.org/10.1071/pp9940675openalex-snapshot

Salt Tolerance Is Not Associated With the Sodium Accumulation of Two Maize Hybrids

inferredcites →https://doi.org/10.1093/aob/mct205openalex-snapshot

Learning from halophytes: physiological basis and strategies to improve abiotic stress tolerance in crops

inferredcites →https://doi.org/10.1093/aob/mcu217openalex-snapshot

Sodium chloride toxicity and the cellular basis of salt tolerance in halophytes

inferredcites →https://doi.org/10.1093/aob/mcw191openalex-snapshot

Evaluating physiological responses of plants to salinity stress

inferredcites →https://doi.org/10.1093/bioinformatics/btg112openalex-snapshot

R/qtl: QTL mapping in experimental crosses

inferredcites →https://doi.org/10.1093/bioinformatics/btm308openalex-snapshot

TASSEL: software for association mapping of complex traits in diverse samples

inferredcites →https://doi.org/10.1093/g3journal/jkab024openalex-snapshot

Integration of high-density genetic mapping with transcriptome analysis uncovers numerous agronomic QTL and reveals candidate genes for the control of tillering in sorghum

inferredcites →https://doi.org/10.1093/genetics/138.3.963openalex-snapshot

Empirical threshold values for quantitative trait mapping.

inferredcites →https://doi.org/10.1093/jexbot/49.327.1619openalex-snapshot

The principles of QTL analysis (a minimal mathematics approach)

inferredcites →https://doi.org/10.1093/jxb/erj108openalex-snapshot

World salinization with emphasis on Australia

inferredcites →https://doi.org/10.1093/jxb/eru229openalex-snapshot

Energy Sorghum--a genetic model for the design of C4 grass bioenergy crops

inferredcites →https://doi.org/10.1093/jxb/erx238openalex-snapshot

Signalling by potassium: another second messenger to add to the list?

inferredcites →https://doi.org/10.1093/pcp/pci172openalex-snapshot

Identification of 33 Rice Aquaporin Genes and Analysis of Their Expression and Function

inferredcites →https://doi.org/10.1104/pp.005645openalex-snapshot

Calcium Signaling through Protein Kinases. The Arabidopsis Calcium-Dependent Protein Kinase Gene Family

inferredcites →https://doi.org/10.1104/pp.105.065029openalex-snapshot

Early Effects of Salinity on Water Transport in Arabidopsis Roots. Molecular and Cellular Features of Aquaporin Expression

inferredcites →https://doi.org/10.1104/pp.105.4.1461openalex-snapshot

An Arabidopsis thaliana cDNA Encoding Ca2+-Dependent Protein Kinase

inferredcites →https://doi.org/10.1104/pp.107.110262openalex-snapshot

Root Plasma Membrane Transporters Controlling K+/Na+ Homeostasis in Salt-Stressed Barley

inferredcites →https://doi.org/10.1104/pp.110.163113openalex-snapshot

Natural Variation of Root Hydraulics in Arabidopsis Grown in Normal and Salt-Stressed Conditions

inferredcites →https://doi.org/10.1104/pp.19.00235openalex-snapshot

MVApp—Multivariate Analysis Application for Streamlined Data Analysis and Curation

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Salt tolerance of maize (Zea mays L.): the role of sodium exclusion

inferredcites →https://doi.org/10.1111/j.1365-3040.2005.01364.xopenalex-snapshot

Screening plants for salt tolerance by measuring K+ flux: a case study for barley

inferredcites →https://doi.org/10.1111/j.1365-3040.2009.02041.xopenalex-snapshot

Reactive oxygen species homeostasis and signalling during drought and salinity stresses

inferredcites →https://doi.org/10.1111/nph.13757openalex-snapshot

Uncoupling of sodium and chloride to assist breeding for salinity tolerance in crops

inferredcites →https://doi.org/10.1111/nph.15862openalex-snapshot

Osmotic adjustment and energy limitations to plant growth in saline soil

inferredcites →https://doi.org/10.1111/nph.15864openalex-snapshot

Energy costs of salt tolerance in crop plants

inferredcites →https://doi.org/10.1111/nph.16088openalex-snapshot

Properties and functions of calcium‐dependent protein kinases and their relatives in Arabidopsis thaliana

inferredcites →https://doi.org/10.1111/pbr.12805openalex-snapshot

QTL analysis of salt tolerance in Sorghum bicolor during whole‐plant growth stages

inferredcites →https://doi.org/10.1111/pce.12832openalex-snapshot

Non‐selective cation channel activity of aquaporin AtPIP2;1 regulated by Ca 2+ and pH

inferredcites →https://doi.org/10.1111/tpj.13781openalex-snapshot

The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization

inferredcites →https://doi.org/10.1111/tpj.14189openalex-snapshot

Salt stress under the scalpel – dissecting the genetics of salt tolerance

inferredcites →https://doi.org/10.1111/tpj.14424openalex-snapshot

Root vacuolar Na + sequestration but not exclusion from uptake correlates with barley salt tolerance

inferredcites →https://doi.org/10.1146/annurev.arplant.59.032607.092734openalex-snapshot

Plant Aquaporins: Membrane Channels with Multiple Integrated Functions

inferredcites →https://doi.org/10.1146/annurev.arplant.59.032607.092911openalex-snapshot

Mechanisms of Salinity Tolerance

inferredcites →https://doi.org/10.1155/2008/362451openalex-snapshot

Genomics of Sorghum

inferredcites →https://doi.org/10.1186/s12864-015-1243-8openalex-snapshot

Using QTL mapping to investigate the relationships between abiotic stress tolerance (drought and salinity) and agronomic and physiological traits

inferredcites →https://doi.org/10.1186/s12864-015-1760-5openalex-snapshot

Identification and transcriptomic profiling of genes involved in increasing sugar content during salt stress in sweet sorghum leaves

inferredcites →https://doi.org/10.1534/genetics.107.080101openalex-snapshot

Efficient Control of Population Structure in Model Organism Association Mapping

inferredcites →https://doi.org/10.2134/agronj1984.00021962007600050008xopenalex-snapshot

Salinity Effects on Seed Yield, Growth, and Germination of Grain Sorghum1

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A Modified Pedigree Method of Selection in Soybeans1

inferredcites →https://doi.org/10.2135/cropsci1990.0011183x003000060014xopenalex-snapshot

Growth Responses and Mineral Nutrient Relations of Salt‐Stressed Sorghum

inferredcites →https://doi.org/10.3389/fpls.2017.00862openalex-snapshot

Characterization and Regulation of Aquaporin Genes of Sorghum [Sorghum bicolor (L.) Moench] in Response to Waterlogging Stress

inferredcites →https://doi.org/10.3389/fpls.2019.00319openalex-snapshot

Modulation of Ethylene and Ascorbic Acid on Reactive Oxygen Species Scavenging in Plant Salt Response

inferredcites →https://doi.org/10.3390/ijms18112323openalex-snapshot

Divalent Cations Regulate the Ion Conductance Properties of Diverse Classes of Aquaporins

inferredcites →https://doi.org/10.3835/plantgenome2018.02.0010openalex-snapshot

Sequencing‐Based Bin Map Construction of a Tomato Mapping Population, Facilitating High‐Resolution Quantitative Trait Loci Detection

inferredcites →https://doi.org/10.3923/jbs.2007.1492.1495openalex-snapshot

Effects of Salt Stress on Germination Percentage and Seedling Growth in Sweet Sorghum Cultivars

inferredcites →https://doi.org/10.3923/rjes.2008.298.304openalex-snapshot

The Effects of Salt Stress on Growth Parameters and Carbohydrates Contents in Sweet Sorghum

inferredcites →https://doi.org/10.4314/ajb.v7i22.59513openalex-snapshot

Sorghum stem yield and soluble carbohydrates under different salinity levels

inferredcites →https://doi.org/10.5772/22331openalex-snapshot

Salinity Stress and Salt Tolerance

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s00425-021-03671-8openalex-snapshot

Sorghum under saline conditions: responses, tolerance mechanisms, and management strategies

inferred← citeshttps://doi.org/10.3389/fpls.2022.810632openalex-snapshot

Genetic Dissection and Quantitative Trait Loci Mapping of Agronomic and Fodder Quality Traits in Sorghum Under Different Water Regimes

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