On the public citation graph

Inferring Patterns of Hybridization and Polyploidy in the Plant Genus Penstemon (Plantaginaceae)

https://doi.org/10.1101/2020.09.04.283093

0 signed · 75 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/aps3.1156openalex-snapshot

Fluidigm2 PURC : Automated processing and haplotype inference for double‐barcoded PCR amplicons

inferredcites →https://doi.org/10.1002/tax.562013openalex-snapshot

Concordance trees, concordance factors, and the exploration of reticulate genealogy

inferredcites →https://doi.org/10.1016/0040-5809(84)90027-3openalex-snapshot

Line-of-descent and genealogical processes, and their applications in population genetics models

inferredcites →https://doi.org/10.1016/j.jtbi.2015.03.006openalex-snapshot

Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites

inferredcites →https://doi.org/10.1016/j.tpb.2008.10.004openalex-snapshot

Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model

inferredcites →https://doi.org/10.1016/j.tree.2009.01.009openalex-snapshot

Gene tree discordance, phylogenetic inference and the multispecies coalescent

inferredcites →https://doi.org/10.1016/j.ympev.2011.06.021openalex-snapshot

Quartet MaxCut: A fast algorithm for amalgamating quartet trees

inferredcites →https://doi.org/10.1016/j.ympev.2017.04.003openalex-snapshot

Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae)

inferredcites →https://doi.org/10.1016/s0076-6879(05)95009-xopenalex-snapshot

ISSR Techniques for Evolutionary Biology

inferredcites →https://doi.org/10.1017/s0021900200034446openalex-snapshot

On the genealogy of large populations

inferredcites →https://doi.org/10.1038/nature05706openalex-snapshot

Hybrid speciation

inferredcites →https://doi.org/10.1043/0363-6445-27.1.138openalex-snapshot

A Phylogenetic and Biogeographic Analysis of the Cheloneae (Scrophulariaceae) Based on ITS and matK Sequence Data

inferredcites →https://doi.org/10.1046/j.1365-294x.1998.00425.xopenalex-snapshot

Assessing hybridization in natural populations of Penstemon (Scrophulariaceae) using hypervariable intersimple sequence repeat (ISSR) bands

inferredcites →https://doi.org/10.1073/pnas.95.9.5112openalex-snapshot

Diploid hybrid speciation in Penstemon (Scrophulariaceae)

inferredcites →https://doi.org/10.1080/10635150601146041openalex-snapshot

Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence

inferredcites →https://doi.org/10.1080/10635150802429642openalex-snapshot

A Rapid Bootstrap Algorithm for the RAxML Web Servers

inferredcites →https://doi.org/10.1086/407484openalex-snapshot

The Role of Trichomes in Plant Defense

inferredcites →https://doi.org/10.1086/498854openalex-snapshot

Anther Evolution: Pollen Presentation Strategies When Pollinators Differ

inferredcites →https://doi.org/10.1086/698120openalex-snapshot

Geographic Range Dynamics Drove Ancient Hybridization in a Lineage of Angiosperms

inferredcites →https://doi.org/10.1093/bioinformatics/btm619openalex-snapshot

Phyutility: a phyloinformatics tool for trees, alignments and molecular data

inferredcites →https://doi.org/10.1093/bioinformatics/btp133openalex-snapshot

PADRE: a package for analyzing and displaying reticulate evolution

inferredcites →https://doi.org/10.1093/bioinformatics/btq539openalex-snapshot

BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis

inferredcites →https://doi.org/10.1093/bioinformatics/btr507openalex-snapshot

FLASH: fast length adjustment of short reads to improve genome assemblies

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/bioinformatics/btv234openalex-snapshot

ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes

inferredcites →https://doi.org/10.1093/genetics/122.4.957openalex-snapshot

Gene genealogy in three related populations: consistency probability between gene and population trees.

inferredcites →https://doi.org/10.1093/molbev/msl170openalex-snapshot

Bayesian Estimation of Concordance among Gene Trees

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/molbev/msw079openalex-snapshot

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

inferredcites →https://doi.org/10.1093/molbev/msx235openalex-snapshot

PhyloNetworks: A Package for Phylogenetic Networks

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040517openalex-snapshot

Relationships between gene trees and species trees.

inferredcites →https://doi.org/10.1093/sysbio/46.3.523openalex-snapshot

Gene Trees in Species Trees

inferredcites →https://doi.org/10.1093/sysbio/syr096openalex-snapshot

Inferring Species Networks from Gene Trees in High-Polyploid North American and Hawaiian Violets (Viola, Violaceae)

inferredcites →https://doi.org/10.1093/sysbio/syt012openalex-snapshot

Statistical Inference of Allopolyploid Species Networks in the Presence of Incomplete Lineage Sorting

inferredcites →https://doi.org/10.1093/sysbio/syt057openalex-snapshot

Poor Fit to the Multispecies Coalescent is Widely Detectable in Empirical Data

inferredcites →https://doi.org/10.1093/sysbio/syv004openalex-snapshot

Assignment of Homoeologs to Parental Genomes in Allopolyploids for Species Tree Inference, with an Example from Fumaria (Papaveraceae)

inferredcites →https://doi.org/10.1093/sysbio/syv039openalex-snapshot

Exploring Tree-Like and Non-Tree-Like Patterns Using Genome Sequences: An Example Using the Inbreeding Plant SpeciesArabidopsis thaliana(L.) Heynh

inferredcites →https://doi.org/10.1093/sysbio/syw083openalex-snapshot

Ancestral Gene Flow and Parallel Organellar Genome Capture Result in Extreme Phylogenomic Discord in a Lineage of Angiosperms

inferredcites →https://doi.org/10.1093/sysbio/syy015openalex-snapshot

Inferring Phylogenetic Networks Using PhyloNet

inferredcites →https://doi.org/10.1093/sysbio/syy019openalex-snapshot

The Biogeography of Deep Time Phylogenetic Reticulation

inferredcites →https://doi.org/10.1093/sysbio/syy023openalex-snapshot

HyDe: A Python Package for Genome-Scale Hybridization Detection

inferredcites →https://doi.org/10.1093/sysbio/syy033openalex-snapshot

Phylogenetic Comparative Methods on Phylogenetic Networks with Reticulations

inferredcites →https://doi.org/10.1093/sysbio/syy039openalex-snapshot

Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements

inferredcites →https://doi.org/10.1101/023986openalex-snapshot

Trait Evolution on Phylogenetic Networks

inferredcites →https://doi.org/10.1101/034348openalex-snapshot

An Invariants-based Method for Efficient Identification of Hybrid Species From Large-scale Genomic Data

inferredcites →https://doi.org/10.1111/1755-0998.12435openalex-snapshot

Posterior predictive checks of coalescent models: P2C2M, an R package

inferredcites →https://doi.org/10.1111/2041-210x.12694openalex-snapshot

A permutation approach for inferring species networks from gene trees in polyploid complexes by minimising deep coalescences

inferredcites →https://doi.org/10.1111/j.1469-8137.2007.02219.xopenalex-snapshot

Constrained lability in floral evolution: counting convergent origins of hummingbird pollination in Penstemon and Keckiella

inferredcites →https://doi.org/10.1111/j.1558-5646.1954.tb01504.xopenalex-snapshot

HYBRIDIZATION AS AN EVOLUTIONARY STIMULUS

inferredcites →https://doi.org/10.1111/j.1558-5646.1955.tb01553.xopenalex-snapshot

HYBRIDIZATION, HOMOGAMY, AND SYMPATRIC SPECIATION

inferredcites →https://doi.org/10.1111/j.1558-5646.1990.tb03856.xopenalex-snapshot

HYBRIDS AND PHYLOGENETIC SYSTEMATICS I. PATTERNS OF CHARACTER EXPRESSION IN HYBRIDS AND THEIR IMPLICATIONS FOR CLADISTIC ANALYSIS

inferredcites →https://doi.org/10.1111/j.1558-5646.1992.tb01127.xopenalex-snapshot

HYBRIDS AND PHYLOGENETIC SYSTEMATICS II. THE IMPACT OF HYBRIDS ON CLADISTIC ANALYSIS

inferredcites →https://doi.org/10.1111/nph.14111openalex-snapshot

Next‐generation polyploid phylogenetics: rapid resolution of hybrid polyploid complexes using PacBio single‐molecule sequencing

inferredcites →https://doi.org/10.1111/nph.15099openalex-snapshot

Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)

inferredcites →https://doi.org/10.1139/g10-106openalex-snapshot

A survey ofPenstemon’sgenome size

inferredcites →https://doi.org/10.1186/s12862-017-1019-7openalex-snapshot

Evaluating allopolyploid origins in strawberries (Fragaria) using haplotypes generated from target capture sequencing

inferredcites →https://doi.org/10.1239/aap/1208358894openalex-snapshot

Identifiability of a Markovian model of molecular evolution with gamma-distributed rates

inferredcites →https://doi.org/10.1371/journal.pgen.1005896openalex-snapshot

Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting

inferredcites →https://doi.org/10.1371/journal.pone.0148203openalex-snapshot

A Phylogenomic Approach Based on PCR Target Enrichment and High Throughput Sequencing: Resolving the Diversity within the South American Species of Bartsia L. (Orobanchaceae)

inferredcites →https://doi.org/10.1554/04-661.1openalex-snapshot

INVESTIGATING THE EVOLUTIONARY HISTORY OF THE PACIFIC NORTHWEST MESIC FOREST ECOSYSTEM: HYPOTHESIS TESTING WITHIN A COMPARATIVE PHYLOGEOGRAPHIC FRAMEWORK

inferredcites →https://doi.org/10.1600/036364404772974077openalex-snapshot

Phylogenetic Relationships and Morphological Evolution in Penstemon subg. Dasanthera (Veronicaceae)

inferredcites →https://doi.org/10.1600/036364407780360094openalex-snapshot

Insights into the Biogeography of the Pacific Northwest of North America: Evidence from the Phylogeography of Salix melanopsis

inferredcites →https://doi.org/10.2307/2421327openalex-snapshot

Studies in Penstemon VIII A Cyto-taxonomic Account of the Section Spermunculus

inferredcites →https://doi.org/10.2307/2805112openalex-snapshot

A Redefinition of Penstemon (Scrophulariaceae)

inferredcites →https://doi.org/10.2307/3669297openalex-snapshot

Hybridization of Penstemon Barbatus (Scrophulariaceae) of Section Elmigera with Species of a Section Habroanthus

inferredcites →https://doi.org/10.3389/fevo.2016.00060openalex-snapshot

Testing the Hypothesis of Allopolyploidy in the Origin of Penstemon azureus (Plantaginaceae)

inferredcites →https://doi.org/10.3732/ajb.1500519openalex-snapshot

Multiplexed shotgun genotyping resolves species relationships within the North American genus Penstemon

inferredcites →https://doi.org/10.3732/ajb.93.11.1699openalex-snapshot

Phylogeny, taxonomic affinities, and biogeography of Penstemon (Plantaginaceae) based on ITS and cpDNA sequence data

inferredcites →https://doi.org/10.3732/apps.1400044openalex-snapshot

Gene prediction and annotation in Penstemon (Plantaginaceae): A workflow for marker development from extremely low‐coverage genome sequencing

inferredcites →https://doi.org/10.5962/bhl.title.4553openalex-snapshot

Introgressive hybridization

inferredcites →https://doi.org/10.7312/steb94536openalex-snapshot

Variation and Evolution in Plants

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ajb2.16118openalex-snapshot

Testing hypotheses of hybrid taxon formation in the shrubby beardtongues (Penstemon subgenus Dasanthera)

inferred← citeshttps://doi.org/10.1007/978-1-0716-2561-3_10openalex-snapshot

PURC Provides Improved Sequence Inference for Polyploid Phylogenetics and Other Manifestations of the Multiple-Copy Problem

inferred← citeshttps://doi.org/10.1007/s00285-022-01792-6openalex-snapshot

The hybrid number of a ploidy profile

inferred← citeshttps://doi.org/10.1101/2021.11.18.468666openalex-snapshot

PURC v2.0: A Program for Improved Sequence Inference for Polyploid Phylogenetics and Other Manifestations of the Multiple-Copy Problem

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.