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ClinePlotR: Visualizing genomic clines and detecting outliers in R

https://doi.org/10.1101/2020.09.05.284109

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ece3.609openalex-snapshot

Alternative forms for genomic clines

inferredcites →https://doi.org/10.1016/j.ecolmodel.2005.03.026openalex-snapshot

Maximum entropy modeling of species geographic distributions

inferredcites →https://doi.org/10.1016/j.tree.2008.07.008openalex-snapshot

Admixture as the basis for genetic mapping

inferredcites →https://doi.org/10.1038/s41437-019-0259-2openalex-snapshot

Hybridization drives genetic erosion in sympatric desert fishes of western North America

inferredcites →https://doi.org/10.1093/bioinformatics/bty191openalex-snapshot

Minimap2: pairwise alignment for nucleotide sequences

inferredcites →https://doi.org/10.1093/bioinformatics/btz966openalex-snapshot

ipyrad: Interactive assembly and analysis of RADseq datasets

inferredcites →https://doi.org/10.1093/czoolo/59.1.72openalex-snapshot

The geography of introgression in a patchy environment and the thorn in the side of ecological speciation

inferredcites →https://doi.org/10.1093/gbe/evaa063openalex-snapshot

An Annotated Chromosome-Level Reference Genome of the Red-Eared Slider Turtle (Trachemys scripta elegans)

inferredcites →https://doi.org/10.1098/rstb.2011.0196openalex-snapshot

Genomics of isolation in hybrids

inferredcites →https://doi.org/10.1111/1755-0998.12009.xopenalex-snapshot

bgc: Software for Bayesian estimation of genomic clines

inferredcites →https://doi.org/10.1111/2041-210x.12261openalex-snapshot

ENM eval: An R package for conducting spatially independent evaluations and estimating optimal model complexity for Maxent ecological niche models

inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04098.xopenalex-snapshot

A powerful regression‐based method for admixture mapping of isolation across the genome of hybrids

inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05074.xopenalex-snapshot

Bayesian estimation of genomic clines

inferredcites →https://doi.org/10.1111/j.1558-5646.1983.tb05563.xopenalex-snapshot

MULTILOCUS CLINES

inferredcites →https://doi.org/10.1111/j.1558-5646.2012.01587.xopenalex-snapshot

GENOMIC REGIONS WITH A HISTORY OF DIVERGENT SELECTION AFFECT FITNESS OF HYBRIDS BETWEEN TWO BUTTERFLY SPECIES

inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02733.xopenalex-snapshot

introgress : a software package for mapping components of isolation in hybrids

inferredcites →https://doi.org/10.1111/mec.12201openalex-snapshot

The genomic consequences of adaptive divergence and reproductive isolation between species of manakins

inferredcites →https://doi.org/10.1111/mec.15403openalex-snapshot

Contrasting genomic and phenotypic outcomes of hybridization between pairs of mimetic butterfly taxa across a suture zone

inferredcites →https://doi.org/10.1111/mec.15622openalex-snapshot

Contrasting signatures of introgression in North American box turtle ( Terrapene spp.) contact zones

inferredcites →https://doi.org/10.1146/annurev-ecolsys-110316-022652openalex-snapshot

Analysis of Population Genomic Data from Hybrid Zones

inferredcites →https://doi.org/10.7717/peerj-cs.251openalex-snapshot

RIdeogram : drawing SVG graphics to visualize and map genome-wide data on the idiograms

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ece3.10399openalex-snapshot

Variable rates of hybridization among contact zones between a pair of topminnow species, Fundulus notatus and F. olivaceus

inferred← citeshttps://doi.org/10.1111/eva.13233openalex-snapshot

Spatial population genetics in heavily managed species: Separating patterns of historical translocation from contemporary gene flow in white‐tailed deer

inferred← citeshttps://doi.org/10.1111/evo.14381openalex-snapshot

Weak coupling among barrier loci and waves of neutral and adaptive introgression across an expanding hybrid zone

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