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Discovery of divided RdRp sequences and a hitherto unknown genomic complexity in fungal viruses

https://doi.org/10.1101/2020.09.08.288829

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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A novel narnavirus from the plant-pathogenic fungus Magnaporthe oryzae

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Rapid detection of Magnaporthe oryzae chrysovirus 1-A from fungal colonies on agar plates and lesions of rice blast

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A simple and rapid method to purify viral dsRNA from plant and fungal tissue

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Extraction and electrophoretic analysis of large dsRNAs from desiccated plant tissues infected with plant viruses and biotrophic fungi

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Incidence of dsRNA Mycoviruses in a Collection of Aspergillus fumigatus Isolates

inferredcites →https://doi.org/10.1016/j.fgb.2006.01.014openalex-snapshot

Dynamics of dsRNA mycoviruses in black Aspergillus populations

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Magnaporthe oryzae chrysovirus 1 strain D confers growth inhibition to the host fungus and exhibits multiform viral structural proteins

inferredcites →https://doi.org/10.1073/pnas.1717806115openalex-snapshot

Viral discovery and diversity in trypanosomatid protozoa with a focus on relatives of the human parasite Leishmania

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Further analysis of the data by Akaike's information criterion and the finite corrections

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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

inferredcites →https://doi.org/10.1093/bioinformatics/btp666openalex-snapshot

Tablet—next generation sequence assembly visualization

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SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

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The Pfam protein families database: towards a more sustainable future

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Isolation and Analysis of Double-Stranded RNA from Virus-Infected Plant and Fungal Tissue

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Molecular characterization of the plant virus genus Ourmiavirus and evidence of inter-kingdom reassortment of viral genome segments as its possible route of origin

inferredcites →https://doi.org/10.1099/vir.0.025411-0openalex-snapshot

Mycoviruses related to chrysovirus affect vegetative growth in the rice blast fungus Magnaporthe oryzae

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The virome of the arbuscular mycorrhizal fungus Gigaspora margarita reveals the first report of DNA fragments corresponding to replicating non‐retroviral RNA viruses in fungi

inferredcites →https://doi.org/10.1111/1462-2920.14065openalex-snapshot

Novel, diverse RNA viruses from Mediterranean isolates of the phytopathogenic fungus, Rosellinia necatrix : insights into evolutionary biology of fungal viruses

inferredcites →https://doi.org/10.1111/1755-0998.12936openalex-snapshot

Unveiling the RNA virosphere associated with marine microorganisms

inferredcites →https://doi.org/10.1111/j.1755-0998.2011.03021.xopenalex-snapshot

Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data

inferredcites →https://doi.org/10.1128/jvi.00357-16openalex-snapshot

Identification of Diverse Mycoviruses through Metatranscriptomics Characterization of the Viromes of Five Major Fungal Plant Pathogens

inferredcites →https://doi.org/10.1128/mbio.02329-18openalex-snapshot

Origins and Evolution of the Global RNA Virome

inferredcites →https://doi.org/10.1146/annurev-phyto-080508-081932openalex-snapshot

Viruses of Plant Pathogenic Fungi

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BLAST+: architecture and applications

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FLDS: A Comprehensive dsRNA Sequencing Method for Intracellular RNA Virus Surveillance

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dsRNA-seq Reveals Novel RNA Virus and Virus-Like Putative Complete Genome Sequences from Hymeniacidon sp. Sponge

inferredcites →https://doi.org/10.1371/journal.pone.0077381openalex-snapshot

Double-Stranded RNA Mycovirus Infection of Aspergillus fumigatus Is Not Dependent on the Genetic Make-Up of the Host

inferredcites →https://doi.org/10.1371/journal.pone.0200511openalex-snapshot

Discovery and characterization of novel Aspergillus fumigatus mycoviruses

inferredcites →https://doi.org/10.1371/journal.pone.0219207openalex-snapshot

Hiding in plain sight: New virus genomes discovered via a systematic analysis of fungal public transcriptomes

inferredcites →https://doi.org/10.3389/fcimb.2019.00249openalex-snapshot

Detection and Molecular Characterization of Novel dsRNA Viruses Related to the Totiviridae Family in Umbelopsis ramanniana

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Beneath the surface: Unsolved questions in soil virus ecology

inferred← citeshttps://doi.org/10.1016/j.soilbio.2025.109791openalex-snapshot

Phosphate amendment drives bloom of RNA viruses after soil wet-up

inferred← citeshttps://doi.org/10.1016/j.virol.2025.110604openalex-snapshot

Grapevine holobiome metatranscriptomics provides a glimpse into the wood mycovirome

inferred← citeshttps://doi.org/10.1016/j.virusres.2023.199290openalex-snapshot

Seven new mycoviruses identified from isolated ascomycetous macrofungi

inferred← citeshttps://doi.org/10.1016/j.virusres.2024.199476openalex-snapshot

Dothistroma septosporum and Dothistroma pini, the causal agents of Dothistroma needle blight, are infected by multiple viruses

inferred← citeshttps://doi.org/10.1093/ve/veab095openalex-snapshot

Splitting of RNA-dependent RNA polymerase is common in Narnaviridae: Identification of a type II divided RdRp from deep-sea fungal isolates

inferred← citeshttps://doi.org/10.1093/ve/veac038openalex-snapshot

Three new clades of putative viral RNA-dependent RNA polymerases with rare or unique catalytic triads discovered in libraries of ORFans from powdery mildews and the yeast of oenological interest Starmerella bacillaris

inferred← citeshttps://doi.org/10.1093/ve/veae003openalex-snapshot

New clades of viruses infecting the obligatory biotroph Bremia lactucae representing distinct evolutionary trajectory for viruses infecting oomycetes

inferred← citeshttps://doi.org/10.1093/ve/veae040openalex-snapshot

A parasite odyssey: An RNA virus concealed in Toxoplasma gondii

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