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Single-nucleus RNA-seq resolves spatiotemporal developmental trajectories in the tomato shoot apex

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.cell.2015.04.044openalex-snapshot
Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells
inferredcites →https://doi.org/10.1016/j.cell.2015.05.002openalex-snapshot
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
inferredcites →https://doi.org/10.1016/j.cell.2019.05.031openalex-snapshot
Comprehensive Integration of Single-Cell Data
inferredcites →https://doi.org/10.1016/j.celrep.2019.04.054openalex-snapshot
High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types
inferredcites →https://doi.org/10.1016/j.cub.2018.12.041openalex-snapshot
DOF2.1 Controls Cytokinin-Dependent Vascular Cell Proliferation Downstream of TMO5/LHW
inferredcites →https://doi.org/10.1016/j.devcel.2019.02.022openalex-snapshot
Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single Cell RNA Sequencing
inferredcites →https://doi.org/10.1016/j.molp.2018.06.006openalex-snapshot
Molecular Mechanisms of Leaf Morphogenesis
inferredcites →https://doi.org/10.1016/j.molp.2019.04.004openalex-snapshot
A Single-Cell RNA Sequencing Profiles the Developmental Landscape of Arabidopsis Root
inferredcites →https://doi.org/10.1016/j.pbi.2015.09.008openalex-snapshot
Transcriptional control of cell fate in the stomatal lineage
inferredcites →https://doi.org/10.1016/j.pbi.2018.06.005openalex-snapshot
From signals to stem cells and back again
inferredcites →https://doi.org/10.1016/j.scib.2017.09.011openalex-snapshot
Single-cell transcriptome analysis reveals widespread monoallelic gene expression in individual rice mesophyll cells
inferredcites →https://doi.org/10.1016/j.tplants.2019.10.008openalex-snapshot
Single-Cell Transcriptomics: A High-Resolution Avenue for Plant Functional Genomics
inferredcites →https://doi.org/10.1016/j.tplants.2019.12.025openalex-snapshot
Genetic Control of Glandular Trichome Development
inferredcites →https://doi.org/10.1038/nbt.2859openalex-snapshot
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
inferredcites →https://doi.org/10.1038/s41467-018-08083-zopenalex-snapshot
A gene expression map of shoot domains reveals regulatory mechanisms
inferredcites →https://doi.org/10.1038/s41467-020-18158-5openalex-snapshot
Single cell transcriptomics comes of age
inferredcites →https://doi.org/10.1073/pnas.0900843106openalex-snapshot
Gene expression map of the Arabidopsis shoot apical meristem stem cell niche
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btx194openalex-snapshot
SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
inferredcites →https://doi.org/10.1093/nar/gkq310openalex-snapshot
agriGO: a GO analysis toolkit for the agricultural community
inferredcites →https://doi.org/10.1101/gr.1239303openalex-snapshot
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
inferredcites →https://doi.org/10.1104/pp.18.01482openalex-snapshot
Single-Cell RNA Sequencing Resolves Molecular Relationships Among Individual Plant Cells
inferredcites →https://doi.org/10.1105/tpc.18.00785openalex-snapshot
Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana
inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03514.xopenalex-snapshot
Epidermis: the formation and functions of a fundamental plant tissue
inferredcites →https://doi.org/10.1111/nph.16283openalex-snapshot
Glandular trichomes: micro‐organs with model status?
inferredcites →https://doi.org/10.1126/science.1090022openalex-snapshot
A Gene Expression Map of the Arabidopsis Root
inferredcites →https://doi.org/10.1146/annurev-genet-120116-024525openalex-snapshot
Genetic Networks in Plant Vascular Development
inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
inferredcites →https://doi.org/10.1186/s13059-016-0931-2openalex-snapshot
The potential of single-cell profiling in plants
inferredcites →https://doi.org/10.1242/dev.106104openalex-snapshot
A high-resolution gene expression map of the Arabidopsis shoot meristem stem cell niche
inferredcites →https://doi.org/10.15252/msb.20145470openalex-snapshot
An organ boundary‐enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ctm2.694openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/imo2.70047openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/npp2.70056openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-0716-3299-4_15openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-0716-4470-6_16openalex-snapshot
Quantitative Analysis of Tomato Flower Pedicel Abscission and Single-Cell Transcriptome Analysis
inferred← citeshttps://doi.org/10.1007/978-3-031-00848-1_6openalex-snapshot
The Longan (Dimocarpus longan) Genome
inferred← citeshttps://doi.org/10.1007/978-981-95-5109-5_11openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00299-024-03168-0openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00344-024-11238-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s11033-023-09042-8openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s12298-025-01558-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s42994-021-00040-7openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-443-23736-2.00015-0openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.cropd.2023.100041openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.csbj.2023.06.016openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.devcel.2022.04.011openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.indcrop.2023.117825openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.indcrop.2024.119646openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.jgg.2021.06.001openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.molp.2020.10.012openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.molp.2023.02.005openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ncrops.2024.100025openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.pbi.2021.102059openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.pbi.2021.102113openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.plantsci.2022.111535openalex-snapshot
An optimized FACS-free single-nucleus RNA sequencing (snRNA-seq) method for plant science research
inferred← citeshttps://doi.org/10.1016/j.tplants.2021.08.016openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.tplants.2023.10.002openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.tplants.2024.03.010openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.xinn.2022.100342openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.xplc.2023.100740openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41467-024-55755-0openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s42003-021-02477-4openalex-snapshot
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inferred← citeshttps://doi.org/10.1080/07388551.2023.2165900openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/jxb/erae107openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/jxb/erae454openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/plcell/koae077openalex-snapshot
A gradient of the HD-Zip regulator Woolly regulates multicellular trichome morphogenesis in tomato
inferred← citeshttps://doi.org/10.1101/2021.10.20.465066openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2023.10.26.562893openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2024.12.14.628512openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/jipb.70272openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/jipb.70287openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/nph.20269openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/nph.20446openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/pbi.13725openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/pbi.70422openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/tpj.15772openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/tpj.15927openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/tpj.16319openalex-snapshot
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inferred← citeshttps://doi.org/10.1146/annurev-arplant-081320-090914openalex-snapshot
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inferred← citeshttps://doi.org/10.1146/annurev-arplant-081720-010120openalex-snapshot
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inferred← citeshttps://doi.org/10.1146/annurev-genet-071719-020453openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s13059-021-02288-0openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s13059-021-02537-2openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s13059-026-03989-0openalex-snapshot
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inferred← citeshttps://doi.org/10.1242/dev.200179openalex-snapshot
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inferred← citeshttps://doi.org/10.21203/rs.3.rs-3079082/v1openalex-snapshot
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inferred← citeshttps://doi.org/10.3389/fpls.2022.988594openalex-snapshot
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inferred← citeshttps://doi.org/10.3389/fpls.2025.1666531openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/agronomy14112530openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/cells11233919openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/cells13181561openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/ijms23094497openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/ijms26041466openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/plants13091276openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/plants13121679openalex-snapshot
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