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Transcriptomic analysis of Lentinus squarrosulus provide insights into its biodegradation ability

https://doi.org/10.1101/2020.09.28.316471
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Combined sequence and structure analysis of the fungal laccase family
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Svf1 inhibits reactive oxygen species generation and promotes survival under conditions of oxidative stress inSaccharomyces cerevisiae
inferredcites →https://doi.org/10.1007/s00253-011-3473-2openalex-snapshot
Fungal enzyme sets for plant polysaccharide degradation
inferredcites →https://doi.org/10.1016/0014-5793(85)81343-0openalex-snapshot
Acetyl xylan esterases in fungal cellulolytic systems
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Cytochrome P450 enzymes in the fungal kingdom
inferredcites →https://doi.org/10.1016/j.enzmictec.2012.10.003openalex-snapshot
Fungal laccase, manganese peroxidase and lignin peroxidase: Gene expression and regulation
inferredcites →https://doi.org/10.1016/j.enzmictec.2015.02.006openalex-snapshot
Development of reproducible assays for polygalacturonase and pectinase
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Genes associated with lignin degradation in the polyphagous white-rot pathogen Heterobasidion irregulare show substrate-specific regulation
inferredcites →https://doi.org/10.1016/j.funbio.2017.05.010openalex-snapshot
A revised family-level classification of the Polyporales (Basidiomycota)
inferredcites →https://doi.org/10.1016/s0021-9258(18)35893-9openalex-snapshot
Manganese(II) oxidation by manganese peroxidase from the basidiomycete Phanerochaete chrysosporium. Kinetic mechanism and role of chelators.
inferredcites →https://doi.org/10.1021/ac60147a030openalex-snapshot
Use of Dinitrosalicylic Acid Reagent for Determination of Reducing Sugar
inferredcites →https://doi.org/10.1038/s41598-017-10952-4openalex-snapshot
FunctionAnnotator, a versatile and efficient web tool for non-model organism annotation
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Isolation and characterization of an active mannanase-producing anaerobic bacterium, Clostridium tertiumKT-5A, from lotus soil
inferredcites →https://doi.org/10.1073/pnas.0602398103openalex-snapshot
Mechanism of action of a flavin-containing monooxygenase
inferredcites →https://doi.org/10.1073/pnas.1119912109openalex-snapshot
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis
inferredcites →https://doi.org/10.1074/jbc.274.23.16040openalex-snapshot
Yap1 and Skn7 Control Two Specialized Oxidative Stress Response Regulons in Yeast
inferredcites →https://doi.org/10.1080/09168451.2016.1182418openalex-snapshot
Analysis of de novo sequencing and transcriptome assembly and lignocellulolytic enzymes gene expression of Coriolopsis gallica HTC
inferredcites →https://doi.org/10.1093/bioinformatics/bti610openalex-snapshot
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
inferredcites →https://doi.org/10.1093/database/bav008openalex-snapshot
mycoCLAP, the database for characterized lignocellulose-active proteins of fungal origin: resource and text mining curation support
inferredcites →https://doi.org/10.1093/nar/gki458openalex-snapshot
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
inferredcites →https://doi.org/10.1093/nar/gkm321openalex-snapshot
KAAS: an automatic genome annotation and pathway reconstruction server
inferredcites →https://doi.org/10.1093/nar/gkt1178openalex-snapshot
The carbohydrate-active enzymes database (CAZy) in 2013
inferredcites →https://doi.org/10.1093/nar/gky418openalex-snapshot
dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
inferredcites →https://doi.org/10.1111/febs.13224openalex-snapshot
Lignin‐degrading enzymes
inferredcites →https://doi.org/10.1111/j.1574-6976.2008.00106.xopenalex-snapshot
Degradation of cellulose by basidiomycetous fungi
inferredcites →https://doi.org/10.1126/science.1221748openalex-snapshot
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
inferredcites →https://doi.org/10.1128/aem.00314-09openalex-snapshot
Transcriptome and Secretome Analyses of Phanerochaete chrysosporium Reveal Complex Patterns of Gene Expression
inferredcites →https://doi.org/10.1128/aem.02064-15openalex-snapshot
Regulation of Gene Expression during the Onset of Ligninolytic Oxidation by Phanerochaete chrysosporium on Spruce Wood
inferredcites →https://doi.org/10.1128/aem.03652-13openalex-snapshot
Temporal Alterations in the Secretome of the Selective Ligninolytic Fungus Ceriporiopsis subvermispora during Growth on Aspen Wood Reveal This Organism's Strategy for Degrading Lignocellulose
inferredcites →https://doi.org/10.1128/aem.42.2.290-296.1981openalex-snapshot
Nutritional Regulation of Lignin Degradation by Phanerochaete chrysosporium
inferredcites →https://doi.org/10.1128/aem.66.3.920-924.2000openalex-snapshot
Copper Induction of Laccase Isoenzymes in the Ligninolytic Fungus Pleurotus ostreatus
inferredcites →https://doi.org/10.1139/m78-195openalex-snapshot
Cellulase and β-glucosidase production by a basidiomycete species
inferredcites →https://doi.org/10.1146/annurev.mi.41.100187.002341openalex-snapshot
Enzymatic "Combustion": The Microbial Degradation of Lignin
inferredcites →https://doi.org/10.1155/2015/376387openalex-snapshot
Edible Mushrooms: Improving Human Health and Promoting Quality Life
inferredcites →https://doi.org/10.1186/gb-2006-7-s1-s10openalex-snapshot
Automatic annotation of eukaryotic genes, pseudogenes and promoters
inferredcites →https://doi.org/10.1186/s13068-018-1060-9openalex-snapshot
Deciphering lignocellulose deconstruction by the white rot fungus Irpex lacteus based on genomic and transcriptomic analyses
inferredcites →https://doi.org/10.1186/s13068-019-1436-5openalex-snapshot
Peptide-based functional annotation of carbohydrate-active enzymes by conserved unique peptide patterns (CUPP)
inferredcites →https://doi.org/10.1371/journal.pone.0081033openalex-snapshot
A First Insight into Pycnoporus sanguineus BAFC 2126 Transcriptome
inferredcites →https://doi.org/10.1371/journal.pone.0087959openalex-snapshot
Oxalate-Metabolising Genes of the White-Rot Fungus Dichomitus squalens Are Differentially Induced on Wood and at High Proton Concentration
inferredcites →https://doi.org/10.15376/biores.12.2.2507-2527openalex-snapshot
Transcriptomic Profile of Lignocellulose Degradation from Trametes versicolor on Poplar Wood
inferredcites →https://doi.org/10.18520/cs/v113/i01/35-42openalex-snapshot
Insights into the Mechanism of Lignocellulose Degradation by Versatile Peroxidases
inferredcites →https://doi.org/10.3852/15-027openalex-snapshot
A survey of genes encoding H 2 O 2 -producing GMC oxidoreductases in 10 Polyporales genomes
inferredcites →https://doi.org/10.7150/ijbs.17390openalex-snapshot
Metadata Analysis of Phanerochaete chrysosporium Gene Expression Data Identified Common CAZymes Encoding Gene Expression Profiles Involved in Cellulose and Hemicellulose Degradation

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inferred← citeshttps://doi.org/10.3390/jof7090700openalex-snapshot
Trends and Applications of Omics Technologies to Functional Characterisation of Enzymes and Protein Metabolites Produced by Fungi
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