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Single Cell and Spatial Transcriptomics Defines the Cellular Architecture of the Antimicrobial Response Network in Human Leprosy Granulomas

https://doi.org/10.1101/2020.12.01.406819

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Antimicrobial actions of calcium binding leucocyte L1 protein, calprotectin

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Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

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Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses

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A Unique Microglia Type Associated with Restricting Development of Alzheimer’s Disease

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Lipid-Associated Macrophages Control Metabolic Homeostasis in a Trem2-Dependent Manner

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Divergence of Macrophage Phagocytic and Antimicrobial Programs in Leprosy

inferredcites →https://doi.org/10.1016/j.jaci.2020.01.042openalex-snapshot

Single-cell transcriptome analysis of human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis

inferredcites →https://doi.org/10.1016/j.jdermsci.2019.11.012openalex-snapshot

Transcriptome landscape of myeloid cells in human skin reveals diversity, rare populations and putative DC progenitors

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SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin

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Cellular, Molecular, and Immunological Characteristics of Langhans Multinucleated Giant Cells Programmed by IL-15

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MRP8/14 induces autophagy to eliminate intracellular Mycobacterium bovis BCG

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Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis

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In vitro activity of protegrin-1 and beta-defensin-1, alone and in combination with isoniazid, against Mycobacterium tuberculosis

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A Subset of TREM2+ Dermal Macrophages Secretes Oncostatin M to Maintain Hair Follicle Stem Cell Quiescence and Inhibit Hair Growth

inferredcites →https://doi.org/10.1016/s0190-9622(83)70021-6openalex-snapshot

T lymphocyte subsets in the skin lesions of patients with leprosy

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Clathrin-Independent Killing of Intracellular Mycobacteria and Biofilm Disruptions Using Synthetic Antimicrobial Polymers

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Lymphocytes bearing antigen-specific γδ T-cell receptors accumulate in human infectious disease lesions

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T-cell release of granulysin contributes to host defense in leprosy

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Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

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Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

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The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

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Integrating single-cell transcriptomic data across different conditions, technologies, and species

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TH17 cells promote microbial killing and innate immune sensing of DNA via interleukin 26

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Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput

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Alternative activation of macrophages

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Expression of an additional cathelicidin antimicrobial peptide protects against bacterial skin infection

inferredcites →https://doi.org/10.1084/jem.166.4.1098openalex-snapshot

The expression of a gamma interferon-induced protein (IP-10) in delayed immune responses in human skin.

inferredcites →https://doi.org/10.1084/jem.169.5.1565openalex-snapshot

Analysis of naturally occurring delayed-type hypersensitivity reactions in leprosy by in situ hybridization.

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Granulysin‐Dependent Killing of Intracellular and ExtracellularMycobacterium tuberculosisby Vγ9/Vδ2 T Lymphocytes

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STAR: ultrafast universal RNA-seq aligner

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MEOX2 regulates nuclear factor-κB activity in vascular endothelial cells through interactions with p65 and IκBβ

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SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data

inferredcites →https://doi.org/10.1093/infdis/jit495openalex-snapshot

Interleukin 22 Inhibits Intracellular Growth of Mycobacterium tuberculosis by Enhancing Calgranulin A Expression

inferredcites →https://doi.org/10.1093/nar/gkv1278openalex-snapshot

APD3: the antimicrobial peptide database as a tool for research and education

inferredcites →https://doi.org/10.1111/1523-1747.ep12263574openalex-snapshot

Comparison of S-100 and OKT6 Antisera in Human Skin

inferredcites →https://doi.org/10.1111/imm.13013openalex-snapshot

Plasticity of antimicrobial and phagocytic programs in human macrophages

inferredcites →https://doi.org/10.1126/science.1123933openalex-snapshot

Toll-Like Receptor Triggering of a Vitamin D-Mediated Human Antimicrobial Response

inferredcites →https://doi.org/10.1126/science.1233665openalex-snapshot

Type I Interferon Suppresses Type II Interferon–Triggered Human Anti-Mycobacterial Responses

inferredcites →https://doi.org/10.1126/science.1925582openalex-snapshot

Defining Protective Responses to Pathogens: Cytokine Profiles in Leprosy Lesions

inferredcites →https://doi.org/10.1126/science.276.5319.1684openalex-snapshot

Differential Effects of Cytolytic T Cell Subsets on Intracellular Infection

inferredcites →https://doi.org/10.1126/science.282.5386.121openalex-snapshot

An Antimicrobial Activity of Cytolytic T Cells Mediated by Granulysin

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Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

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Human antimicrobial cytotoxic T lymphocytes, defined by NK receptors and antimicrobial proteins, kill intracellular bacteria

inferredcites →https://doi.org/10.1126/scitranslmed.3003045openalex-snapshot

Vitamin D Is Required for IFN-γ–Mediated Antimicrobial Activity of Human Macrophages

inferredcites →https://doi.org/10.1126/scitranslmed.3009546openalex-snapshot

IL-32 is a molecular marker of a host defense network in human tuberculosis

inferredcites →https://doi.org/10.1128/aac.00428-13openalex-snapshot

Two Human Host Defense Ribonucleases against Mycobacteria, the Eosinophil Cationic Protein (RNase 3) and RNase 7

inferredcites →https://doi.org/10.1161/circresaha.117.312509openalex-snapshot

Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis

inferredcites →https://doi.org/10.1164/rccm.201509-1746ocopenalex-snapshot

Lipoarabinomannan-Responsive Polycytotoxic T Cells Are Associated with Protection in Human Tuberculosis

inferredcites →https://doi.org/10.1172/jci97508openalex-snapshot

Mycobacterial growth inhibition is associated with trained innate immunity

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IL-26 contributes to host defense against intracellular bacteria

inferredcites →https://doi.org/10.1371/journal.pntd.0007589openalex-snapshot

The cell fate regulator NUPR1 is induced by Mycobacterium leprae via type I interferon in human leprosy

inferredcites →https://doi.org/10.1371/journal.pntd.0007764openalex-snapshot

Identification of a systemic interferon-γ inducible antimicrobial gene signature in leprosy patients undergoing reversal reaction

inferredcites →https://doi.org/10.1371/journal.pone.0009753openalex-snapshot

Dissecting Interferon-Induced Transcriptional Programs in Human Peripheral Blood Cells

inferredcites →https://doi.org/10.4049/jimmunol.149.4.1470openalex-snapshot

Cytokine patterns of immunologically mediated tissue damage

inferredcites →https://doi.org/10.4049/jimmunol.1701733openalex-snapshot

Mycobacterium tuberculosis Transfer RNA Induces IL-12p70 via Synergistic Activation of Pattern Recognition Receptors within a Cell Network

inferredcites →https://doi.org/10.4049/jimmunol.1901211openalex-snapshot

IL-10 Impairs Local Immune Response in Lung Granulomas and Lymph Nodes during Early Mycobacterium tuberculosis Infection

inferredcites →https://doi.org/10.47276/lr.73.1.52openalex-snapshot

Lymphatics in leprosy: relationship to elastic fibres and observations following intra-lesional injections of colloidal carbon

inferredcites →https://doi.org/10.5935/0305-7518.20000081openalex-snapshot

Role of granulysin in immunity to leprosy

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ctm2.669openalex-snapshot

Clinical challenges of tissue preparation for spatial transcriptome

inferred← citeshttps://doi.org/10.1007/978-3-030-87821-4_7openalex-snapshot

Comparative Analysis of Packages and Algorithms for the Analysis of Spatially Resolved Transcriptomics Data

inferred← citeshttps://doi.org/10.1038/s41586-021-03634-9openalex-snapshot

Exploring tissue architecture using spatial transcriptomics

inferred← citeshttps://doi.org/10.1097/moh.0000000000000651openalex-snapshot

Single-cell RNA sequencing to study vascular diversity and function

inferred← citeshttps://doi.org/10.3389/fcimb.2022.792617openalex-snapshot

Using Omics to Study Leprosy, Tuberculosis, and Other Mycobacterial Diseases

inferred← citeshttps://doi.org/10.3389/fphar.2024.1361641openalex-snapshot

Leprosy: Comprehensive insights into pathology, immunology, and cutting-edge treatment strategies, integrating nanoparticles and ethnomedicinal plants

inferred← citeshttps://doi.org/10.3390/life12010067openalex-snapshot

Challenges and Opportunities for the Translation of Single-Cell RNA Sequencing Technologies to Dermatology

inferred← citeshttps://doi.org/10.7150/thno.95908openalex-snapshot

Spatial Transcriptomics: A Powerful Tool in Disease Understanding and Drug Discovery

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