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Genome-wide sequence data show no evidence of admixture and introgression among pollinator wasps associated with a community of Panamanian strangler figs

https://doi.org/10.1101/2020.12.09.418376

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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How reticulated are species?

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Fig volatiles: Their role in attracting pollinators and maintaining pollinator specificity

inferredcites →https://doi.org/10.1007/bf01975677openalex-snapshot

Classification and distribution ofFicus

inferredcites →https://doi.org/10.1007/bf01975680openalex-snapshot

Coevolution of reproductive characteristics in 12 species of New World figs and their pollinator wasps

inferredcites →https://doi.org/10.1007/pl00008861openalex-snapshot

Fruit characteristics and factors affecting fruit removal in a Panamanian community of strangler figs

inferredcites →https://doi.org/10.1007/s00049-010-0043-5openalex-snapshot

Floral scents: their roles in nursery pollination mutualisms

inferredcites →https://doi.org/10.1007/s10682-016-9836-5openalex-snapshot

Geographic structuring into vicariant species-pairs in a wide-ranging, high-dispersal plant–insect mutualism: the case of Ficus racemosa and its pollinating wasps

inferredcites →https://doi.org/10.1016/j.actao.2013.07.009openalex-snapshot

Relative investment in egg load and poison sac in fig wasps: Implications for physiological mechanisms underlying seed and wasp production in figs

inferredcites →https://doi.org/10.1016/j.ympev.2016.12.031openalex-snapshot

First plastid phylogenomic study reveals potential cyto-nuclear discordance in the evolutionary history of Ficus L. (Moraceae)

inferredcites →https://doi.org/10.1016/j.ympev.2018.10.033openalex-snapshot

Multi-allele species reconstruction using ASTRAL

inferredcites →https://doi.org/10.1023/a:1017930023741openalex-snapshot

Specific Attraction of Fig-Pollinating Wasps: Role of Volatile Compounds Released by Tropical Figs

inferredcites →https://doi.org/10.1038/35055543openalex-snapshot

Wolbachia-induced incompatibility precedes other hybrid incompatibilities in Nasonia

inferredcites →https://doi.org/10.1038/35607openalex-snapshot

The breeding structure of a tropical keystone plant resource

inferredcites →https://doi.org/10.1038/hdy.2011.68openalex-snapshot

Next-generation hybridization and introgression

inferredcites →https://doi.org/10.1038/hdy.2016.125openalex-snapshot

Local coexistence and genetic isolation of three pollinator species on the same fig tree species

inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot

Full-length transcriptome assembly from RNA-Seq data without a reference genome

inferredcites →https://doi.org/10.1038/ncomms13942openalex-snapshot

Multiple Dirac cones at the surface of the topological metal LaBi

inferredcites →https://doi.org/10.1038/ncomms14363openalex-snapshot

Ancient hybridization fuels rapid cichlid fish adaptive radiations

inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot

ModelFinder: fast model selection for accurate phylogenetic estimates

inferredcites →https://doi.org/10.1038/s41559-018-0777-yopenalex-snapshot

Insights from genomes into the evolutionary importance and prevalence of hybridization in nature

inferredcites →https://doi.org/10.1073/pnas.0501840102openalex-snapshot

Critical review of host specificity and its coevolutionary implications in the fig/fig-wasp mutualism

inferredcites →https://doi.org/10.1073/pnas.0902213106openalex-snapshot

Wind-borne insects mediate directional pollen transfer between desert fig trees 160 kilometers apart

inferredcites →https://doi.org/10.1073/pnas.0930903100openalex-snapshot

Cryptic species of fig-pollinating wasps: Implications for the evolution of the fig–wasp mutualism, sex allocation, and precision of adaptation

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot

Fast and accurate long-read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btq228openalex-snapshot

DendroPy: a Python library for phylogenetic computing

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/bioinformatics/btu530openalex-snapshot

Quartet Inference from SNP Data Under the Coalescent Model

inferredcites →https://doi.org/10.1093/bioinformatics/btv646openalex-snapshot

PHYLUCE is a software package for the analysis of conserved genomic loci

inferredcites →https://doi.org/10.1093/genetics/155.2.945openalex-snapshot

Inference of Population Structure Using Multilocus Genotype Data

inferredcites →https://doi.org/10.1093/molbev/msr048openalex-snapshot

Testing for Ancient Admixture between Closely Related Populations

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

inferredcites →https://doi.org/10.1093/molbev/msw079openalex-snapshot

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

inferredcites →https://doi.org/10.1093/molbev/msx281openalex-snapshot

UFBoot2: Improving the Ultrafast Bootstrap Approximation

inferredcites →https://doi.org/10.1093/nar/gkw955openalex-snapshot

NOVOPlasty: de novo assembly of organelle genomes from whole genome data

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026334openalex-snapshot

Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis

inferredcites →https://doi.org/10.1093/sysbio/sys068openalex-snapshot

An Extreme Case of Plant–Insect Codiversification: Figs and Fig-Pollinating Wasps

inferredcites →https://doi.org/10.1093/sysbio/syt032openalex-snapshot

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

inferredcites →https://doi.org/10.1093/sysbio/syv023openalex-snapshot

Detection and Polarization of Introgression in a Five-Taxon Phylogeny

inferredcites →https://doi.org/10.1093/sysbio/syw037openalex-snapshot

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

inferredcites →https://doi.org/10.1093/sysbio/syy039openalex-snapshot

Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements

inferredcites →https://doi.org/10.1098/rspb.2002.2100openalex-snapshot

The distribution ofWolbachiain fig wasps: correlations with host phylogeny, ecology and population structure

inferredcites →https://doi.org/10.1098/rspb.2003.2457openalex-snapshot

Reproductive isolation driven by the combined effects of ecological adaptation and reinforcement

inferredcites →https://doi.org/10.1098/rspb.2004.2956openalex-snapshot

Convergent incidences ofWolbachiainfection in fig wasp communities from two continents

inferredcites →https://doi.org/10.1098/rspb.2011.1972openalex-snapshot

Floral volatiles, pollinator sharing and diversification in the fig–wasp mutualism: insights fromFicus natalensis, and its two wasp pollinators (South Africa)

inferredcites →https://doi.org/10.1098/rspb.2015.2963openalex-snapshot

Pollinator sharing and gene flow among closely related sympatric dioecious fig taxa

inferredcites →https://doi.org/10.1111/1755-0998.12509openalex-snapshot

pophelper : an R package and web app to analyse and visualize population structure

inferredcites →https://doi.org/10.1111/2041-210x.12742openalex-snapshot

Enriching the ant tree of life: enhanced UCE bait set for genome‐scale phylogenetics of ants and other Hymenoptera

inferredcites →https://doi.org/10.1111/evo.12584openalex-snapshot

The incidence and pattern of copollinator diversification in dioecious and monoecious figs

inferredcites →https://doi.org/10.1111/evo.13809openalex-snapshot

Inferring processes of coevolutionary diversification in a community of Panamanian strangler figs and associated pollinating wasps*

inferredcites →https://doi.org/10.1111/evo.13902openalex-snapshot

Genomic data reveal a protracted window of introgression during the diversification of a neotropical woodcreeper radiation*

inferredcites →https://doi.org/10.1111/j.0014-3820.2005.tb01747.xopenalex-snapshot

REPRODUCTIVE ISOLATION CAUSED BY NATURAL SELECTION AGAINST IMMIGRANTS FROM DIVERGENT HABITATS

inferredcites →https://doi.org/10.1111/j.1365-2699.1996.tb00013.xopenalex-snapshot

Exceptions to the one:one relationship between African fig trees and their fig wasp pollinators: possible evolutionary scenarios

inferredcites →https://doi.org/10.1111/j.1365-294x.2004.02158.xopenalex-snapshot

Inbreeding and population structure in two pairs of cryptic fig wasp species

inferredcites →https://doi.org/10.1111/j.1471-8286.2005.01155.xopenalex-snapshot

genalex 6: genetic analysis in Excel. Population genetic software for teaching and research

inferredcites →https://doi.org/10.1111/j.1558-5646.1970.tb01804.xopenalex-snapshot

HOST SPECIFICITY OF FIG WASPS (AGAONIDAE)

inferredcites →https://doi.org/10.1111/j.1558-5646.2012.01727.xopenalex-snapshot

POLLINATOR-MEDIATED REPRODUCTIVE ISOLATION AMONG DIOECIOUS FIG SPECIES ( FICUS , MORACEAE)

inferredcites →https://doi.org/10.1111/j.1744-7429.1997.tb00007.xopenalex-snapshot

Active Pollination ofFicus surby Two Sympatric Fig Wasp Species in West Africa

inferredcites →https://doi.org/10.1111/jbi.13069openalex-snapshot

Evaluating hypotheses of expansion from refugia through comparative phylogeography of south‐eastern Coastal Plain amphibians

inferredcites →https://doi.org/10.1111/mec.12814openalex-snapshot

Diversification and asymmetrical gene flow across time and space: lineage sorting and hybridization in polytypic barking frogs

inferredcites →https://doi.org/10.1111/mec.15046openalex-snapshot

Multiple parapatric pollinators have radiated across a continental fig tree displaying clinal genetic variation

inferredcites →https://doi.org/10.1111/mec.15190openalex-snapshot

Faster speciation of fig‐wasps than their host figs leads to decoupled speciation dynamics: Snapshots across the speciation continuum

inferredcites →https://doi.org/10.1111/mec.15350openalex-snapshot

Biogeography, habitat transitions and hybridization in a radiation of South American silverside fishes revealed by mitochondrial and genomic RAD data

inferredcites →https://doi.org/10.1126/science.1188021openalex-snapshot

A Draft Sequence of the Neandertal Genome

inferredcites →https://doi.org/10.1126/science.228.4701.896openalex-snapshot

Sex Ratio Adjustment in Fig Wasps

inferredcites →https://doi.org/10.1126/science.259.5100.1442openalex-snapshot

Population Structure and the Evolution of Virulence in Nematode Parasites of Fig Wasps

inferredcites →https://doi.org/10.1146/annurev.ecolsys.27.1.83openalex-snapshot

EXTINCTION BY HYBRIDIZATION AND INTROGRESSION

inferredcites →https://doi.org/10.1146/annurev.ecolsys.28.1.593openalex-snapshot

The Role of Hybridization and Introgression in the Diversification of Animals

inferredcites →https://doi.org/10.1146/annurev.ecolsys.37.091305.110232openalex-snapshot

Evolutionary Ecology of Figs and Their Associates: Recent Progress and Outstanding Puzzles

inferredcites →https://doi.org/10.1146/annurev.ento.42.1.587openalex-snapshot

BIOLOGY OF WOLBACHIA

inferredcites →https://doi.org/10.1146/annurev.es.10.110179.000305openalex-snapshot

How to be a Fig

inferredcites →https://doi.org/10.1186/1471-2148-11-86openalex-snapshot

Comparisons of host mitochondrial, nuclear and endosymbiont bacterial genes reveal cryptic fig wasp species and the effects of Wolbachiaon host mtDNA evolution and diversity

inferredcites →https://doi.org/10.1186/1471-2148-6-83openalex-snapshot

Deep mtDNA divergences indicate cryptic species in a fig-pollinating wasp

inferredcites →https://doi.org/10.1186/1471-2148-9-248openalex-snapshot

Cyto-nuclear discordance in the phylogeny of Ficus section Galoglychia and host shifts in plant-pollinator associations

inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

inferredcites →https://doi.org/10.1186/s12862-014-0189-9openalex-snapshot

Molecular species delimitation of a symbiotic fig-pollinating wasp species complex reveals extreme deviation from reciprocal partner specificity

inferredcites →https://doi.org/10.1371/journal.pgen.1002967openalex-snapshot

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

inferredcites →https://doi.org/10.1371/journal.pone.0138446openalex-snapshot

Ultraconserved Elements Sequencing as a Low-Cost Source of Complete Mitochondrial Genomes and Microsatellite Markers in Non-Model Amniotes

inferredcites →https://doi.org/10.18637/jss.v022.i02openalex-snapshot

Analogue Methods in Palaeoecology: Using theanaloguePackage

inferredcites →https://doi.org/10.18637/jss.v022.i04openalex-snapshot

The ade4 Package: Implementing the Duality Diagram for Ecologists

inferredcites →https://doi.org/10.2307/1934454openalex-snapshot

On the Pollination Ecology of Ficus Sycomorus in East Africa

inferredcites →https://doi.org/10.2307/3565686openalex-snapshot

Maintenance of Species-Specificity in a Neotropical Fig: Pollinator Wasp Mutualism

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.3732/ajb.1600056openalex-snapshot

Diversification and coevolution in brood pollination mutualisms: Windows into the role of biotic interactions in generating biological diversity

inferredcites →https://doi.org/10.4001/003.017.0212openalex-snapshot

A Fig Crop Pollinated by Three or More Species of Agaonid Fig Wasps

inferredcites →https://doi.org/10.5733/afin.054.0208openalex-snapshot

Fig Wasps (Hymenoptera: Chalcidoidea: Agaonidae, Pteromalidae) Associated with Asian Fig Trees (Ficus, Moraceae) in Southern Africa: Asian Followers and African Colonists

inferredcites →https://doi.org/10.6079/j9illopenalex-snapshot

Illumiprocessor - software for Illumina read quality filtering

inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot

Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

inferredcites →https://doi.org/10.7717/peerj.7755openalex-snapshot

Adapterama I: universal stubs and primers for 384 unique dual-indexed or 147,456 combinatorially-indexed Illumina libraries (iTru & iNext)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ece3.9311openalex-snapshot

Rising temperatures threaten pollinators of fig trees—Keystone resources of tropical forests

inferred← citeshttps://doi.org/10.1007/s13199-021-00781-5openalex-snapshot

Fitness costs for fig wasps that fail to pollinate their host Ficus perforata

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