On the public citation graph

Genotype-phenotype map of an RNA-ligand complex

https://doi.org/10.1101/2020.12.17.423258

0 signed · 41 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471142727.mb1420s92openalex-snapshot

Computer Control of Microscopes Using µManager

inferredcites →https://doi.org/10.1007/978-1-60327-429-6_1openalex-snapshot

UNAFold

inferredcites →https://doi.org/10.1016/j.chembiol.2015.04.018openalex-snapshot

In-Gel Imaging of RNA Processing Using Broccoli Reveals Optimal Aptamer Expression Strategies

inferredcites →https://doi.org/10.1016/j.copbio.2020.01.001openalex-snapshot

RNA-based fluorescent biosensors for live cell imaging of small molecules and RNAs

inferredcites →https://doi.org/10.1021/acs.biochem.9b00048openalex-snapshot

Spectral Tuning by a Single Nucleotide Controls the Fluorescence Properties of a Fluorogenic Aptamer

inferredcites →https://doi.org/10.1021/acschembio.6b00047openalex-snapshot

Quadruplex-Flanking Stem Structures Modulate the Stability and Metal Ion Preferences of RNA Mimics of GFP

inferredcites →https://doi.org/10.1021/cb500499xopenalex-snapshot

RNA Mango Aptamer-Fluorophore: A Bright, High-Affinity Complex for RNA Labeling and Tracking

inferredcites →https://doi.org/10.1021/ja1098325openalex-snapshot

Identification of RNA Pseudoknot-Binding Ligand That Inhibits the −1 Ribosomal Frameshifting of SARS-Coronavirus by Structure-Based Virtual Screening

inferredcites →https://doi.org/10.1021/ja311960gopenalex-snapshot

RNA-Based Fluorescent Biosensors for Live Cell Imaging of Second Messengers Cyclic di-GMP and Cyclic AMP-GMP

inferredcites →https://doi.org/10.1021/ja410819xopenalex-snapshot

Plug-and-Play Fluorophores Extend the Spectral Properties of Spinach

inferredcites →https://doi.org/10.1021/ja411060popenalex-snapshot

Understanding the Photophysics of the Spinach–DFHBI RNA Aptamer–Fluorogen Complex To Improve Live-Cell RNA Imaging

inferredcites →https://doi.org/10.1021/ja508478xopenalex-snapshot

Broccoli: Rapid Selection of an RNA Mimic of Green Fluorescent Protein by Fluorescence-Based Selection and Directed Evolution

inferredcites →https://doi.org/10.1038/nature17995openalex-snapshot

Local fitness landscape of the green fluorescent protein

inferredcites →https://doi.org/10.1038/nchembio.2477openalex-snapshot

Imaging RNA polymerase III transcription using a photostable RNA–fluorophore complex

inferredcites →https://doi.org/10.1038/nmeth.2701openalex-snapshot

A superfolding Spinach2 reveals the dynamic nature of trinucleotide repeat–containing RNA

inferredcites →https://doi.org/10.1038/nrd.2018.93openalex-snapshot

Principles for targeting RNA with drug-like small molecules

inferredcites →https://doi.org/10.1038/nsmb.2865openalex-snapshot

Structural basis for activity of highly efficient RNA mimics of green fluorescent protein

inferredcites →https://doi.org/10.1038/s41586-018-0170-7openalex-snapshot

Pairwise and higher-order genetic interactions during the evolution of a tRNA

inferredcites →https://doi.org/10.1038/s41587-019-0249-1openalex-snapshot

Visualizing RNA dynamics in live cells with bright and stable fluorescent RNAs

inferredcites →https://doi.org/10.1038/s41588-019-0431-xopenalex-snapshot

Determining protein structures using deep mutagenesis

inferredcites →https://doi.org/10.1038/s41588-019-0432-9openalex-snapshot

Inferring protein 3D structure from deep mutation scans

inferredcites →https://doi.org/10.1073/pnas.0703836104openalex-snapshot

Automated de novo prediction of native-like RNA tertiary structures

inferredcites →https://doi.org/10.1073/pnas.1804015115openalex-snapshot

Inferring the shape of global epistasis

inferredcites →https://doi.org/10.1073/pnas.211214298openalex-snapshot

Multidimensional epistasis and the disadvantage of sex

inferredcites →https://doi.org/10.1093/bioinformatics/btz422openalex-snapshot

AlphaFold at CASP13

inferredcites →https://doi.org/10.1093/nar/gkv1479openalex-snapshot

SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction

inferredcites →https://doi.org/10.1093/nar/gkv944openalex-snapshot

Systematic reconstruction of binding and stability landscapes of the fluorogenic aptamer spinach

inferredcites →https://doi.org/10.1093/nar/gkz1084openalex-snapshot

Structure–fluorescence activation relationships of a large Stokes shift fluorogenic RNA aptamer

inferredcites →https://doi.org/10.1093/nar/gkz1192openalex-snapshot

Accurate inference of the full base-pairing structure of RNA by deep mutational scanning and covariation-induced deviation of activity

inferredcites →https://doi.org/10.1126/science.1207339openalex-snapshot

RNA Mimics of Green Fluorescent Protein

inferredcites →https://doi.org/10.1126/science.1218298openalex-snapshot

Fluorescence Imaging of Cellular Metabolites with RNA

inferredcites →https://doi.org/10.1126/science.1712983openalex-snapshot

Structural Features that Give Rise to the Unusual Stability of RNA Hairpins Containing GNRA Loops

inferredcites →https://doi.org/10.1126/science.aae0568openalex-snapshot

The fitness landscape of a tRNA gene

inferredcites →https://doi.org/10.1126/science.aaf0965openalex-snapshot

Network of epistatic interactions within a yeast snoRNA

inferredcites →https://doi.org/10.1146/annurev-genom-083118-014857openalex-snapshot

The Causes and Consequences of Genetic Interactions (Epistasis)

inferredcites →https://doi.org/10.1146/annurev.biochem.69.1.617openalex-snapshot

Aminoacyl-tRNA Synthesis

inferredcites →https://doi.org/10.1186/1748-7188-6-26openalex-snapshot

ViennaRNA Package 2.0

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.copbio.2023.102941openalex-snapshot

Deep learning for optimization of protein expression

inferred← citeshttps://doi.org/10.1038/s41467-022-34902-5openalex-snapshot

Accuracy and data efficiency in deep learning models of protein expression

inferred← citeshttps://doi.org/10.1088/2050-6120/ae008fopenalex-snapshot

An enhanced mountain climbing search algorithm to enable fast and accurate autofocusing in high resolution fluorescence microscopy

inferred← citeshttps://doi.org/10.1101/2023.04.05.535757openalex-snapshot

Nanopore molecular trajectories of a eukaryotic reverse transcriptase reveal a long-range RNA structure sensing mechanism

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.