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Bacterial community dynamics during embryonic development of the little skate ( Leucoraja erinacea )

https://doi.org/10.1101/2020.12.30.424594

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Permutational Multivariate Analysis of Variance ( PERMANOVA )

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Embryonic development of the axial column in the little skate,Leucoraja erinacea

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Remarkable Natural Material Surfaces and Their Engineering Potential

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Data Analysis

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Compositional dissimilarity as a robust measure of ecological distance

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Alternative life-history styles of cartilaginous fishes in time and space

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Permeability coefficients of the egg-case membrane ofScyliorhinus canicula L.

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Promiscuity in mice is associated with increased vaginal bacterial diversity

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Seasonal variation in fecundity, egg case viability, gestation, and neonate size for little skates, Leucoraja erinacea, in the Gulf of Maine

inferredcites →https://doi.org/10.1016/j.cpc.2010.04.018openalex-snapshot

NWChem: A comprehensive and scalable open-source solution for large scale molecular simulations

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Metabarcoding data of bacterial diversity of the deep sea shark, Centroscyllium fabricii

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Ocean acidification exacerbates the impacts of global warming on embryonic little skate, Leucoraja erinacea (Mitchill)

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Alterations of the human skin microbiome after ocean water exposure

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Kenojeinin I, antimicrobial peptide isolated from the skin of the fermented skate, Raja kenojei

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The secret of the mermaid’s purse: Phylogenetic affinities within the Rajidae and the evolution of a novel reproductive strategy in skates

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Urea based osmoregulation and endocrine control in elasmobranch fish with special reference to euryhalinity

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A Note on the Formation of the Egg Case of the Skate

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A Review of Elasmobranch Reproductive Behavior with a Case Study on the Nurse Shark, Ginglymostoma Cirratum

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Ecology of marine Bacteroidetes: a comparative genomics approach

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Primate vaginal microbiomes exhibit species specificity without universal Lactobacillus dominance

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DADA2: High-resolution sample inference from Illumina amplicon data

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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

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FEAST: fast expectation-maximization for microbial source tracking

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Limb proportions show developmental plasticity in response to embryo movement

inferredcites →https://doi.org/10.1046/j.1462-2920.2001.00172.xopenalex-snapshot

Phylogenetic characterization of epibiotic bacteria in the accessory nidamental gland and egg capsules of the squid Loligo pealei (Cephalopoda: Loliginidae)

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Molecular mechanisms underlying the exceptional adaptations of batoid fins

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Use of Ranks in One-Criterion Variance Analysis

inferredcites →https://doi.org/10.1080/19425120.2011.555707openalex-snapshot

Maturation of the Gonads and Reproductive Tracts of the Thornback Ray Raja clavata, with Comments on the Development of a Standardized Reproductive Terminology for Oviparous Elasmobranchs

inferredcites →https://doi.org/10.1089/end.2010.0611openalex-snapshot

Micropatterned Surfaces for Reducing the Risk of Catheter-Associated Urinary Tract Infection: An In Vitro Study on the Effect of Sharklet Micropatterned Surfaces to Inhibit Bacterial Colonization and Migration of Uropathogenic Escherichia coli

inferredcites →https://doi.org/10.1093/femsec/fiu006openalex-snapshot

Bacterial communities associated with four ctenophore genera from the German Bight (North Sea)

inferredcites →https://doi.org/10.1093/nar/gkt1209openalex-snapshot

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

inferredcites →https://doi.org/10.1098/rspb.1997.0181openalex-snapshot

Evolutionary transitions among egg–laying, live–bearing and maternal inputs in sharks and rays

inferredcites →https://doi.org/10.1098/rspb.2019.1571openalex-snapshot

The evolutionary origins and diversity of the neuromuscular system of paired appendages in batoids

inferredcites →https://doi.org/10.1098/rspb.2019.2900openalex-snapshot

An introduction to phylosymbiosis

inferredcites →https://doi.org/10.1098/rspb.2020.0820openalex-snapshot

Transmission efficiency drives host–microbe associations

inferredcites →https://doi.org/10.1099/ijsem.0.001244openalex-snapshot

Undibacterium danionis sp. nov. isolated from a zebrafish (Danio rerio)

inferredcites →https://doi.org/10.1099/ijsem.0.002416openalex-snapshot

Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminigenes sp. nov., Nitrosopumilus oxyclinae sp. nov., and Nitrosopumilus ureiphilus sp. nov., four marine ammonia-oxidizing archaea of the phylum Thaumarchaeota

inferredcites →https://doi.org/10.1099/ijsem.0.003604openalex-snapshot

Undibacterium piscinae sp. nov., isolated from Korean shiner intestine

inferredcites →https://doi.org/10.1111/1462-2920.13665openalex-snapshot

Symbiotic bacteria associated with a bobtail squid reproductive system are detectable in the environment, and stable in the host and developing eggs

inferredcites →https://doi.org/10.1111/1574-6941.12136openalex-snapshot

Diversity of the skin microbiota of fishes: evidence for host species specificity

inferredcites →https://doi.org/10.1111/1758-2229.12537openalex-snapshot

The skin microbiome of the common thresher shark ( Alopias vulpinus ) has low taxonomic and gene function β‐diversity

inferredcites →https://doi.org/10.1111/j.1095-8649.2011.03207.xopenalex-snapshot

Basics of skin structure and function in elasmobranchs: a review

inferredcites →https://doi.org/10.1111/j.1095-8649.2012.03256.xopenalex-snapshot

Assessing the potential for post‐copulatory sexual selection in elasmobranchs

inferredcites →https://doi.org/10.1111/j.1467-2979.2011.00436.xopenalex-snapshot

Social behaviour in sharks and rays: analysis, patterns and implications for conservation

inferredcites →https://doi.org/10.1126/sciadv.aar6849openalex-snapshot

Genes for de novo biosynthesis of omega-3 polyunsaturated fatty acids are widespread in animals

inferredcites →https://doi.org/10.1128/aem.01244-18openalex-snapshot

Spatial Distribution and Diverse Metabolic Functions of Lignocellulose-Degrading Uncultured Bacteria as Revealed by Genome-Centric Metagenomics

inferredcites →https://doi.org/10.1128/mbio.02579-19openalex-snapshot

Drug-Resistant Epimutants Exhibit Organ-Specific Stability and Induction during Murine Infections Caused by the Human Fungal Pathogen Mucor circinelloides

inferredcites →https://doi.org/10.1186/1471-2105-15-41openalex-snapshot

VAMPS: a website for visualization and analysis of microbial population structures

inferredcites →https://doi.org/10.1186/2047-2994-3-28openalex-snapshot

Surface micropattern limits bacterial contamination

inferredcites →https://doi.org/10.1186/gb-2011-12-6-r60openalex-snapshot

Metagenomic biomarker discovery and explanation

inferredcites →https://doi.org/10.1186/s40168-017-0237-yopenalex-snapshot

Normalization and microbial differential abundance strategies depend upon data characteristics

inferredcites →https://doi.org/10.1186/s40168-018-0470-zopenalex-snapshot

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

inferredcites →https://doi.org/10.1186/s40168-020-00840-xopenalex-snapshot

The skin microbiome of elasmobranchs follows phylosymbiosis, but in teleost fishes, the microbiomes converge

inferredcites →https://doi.org/10.1186/s42523-019-0011-5openalex-snapshot

Similar bacterial communities on healthy and injured skin of black tip reef sharks

inferredcites →https://doi.org/10.12688/f1000research.4996.1openalex-snapshot

SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes

inferredcites →https://doi.org/10.12688/f1000research.8986.1openalex-snapshot

Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses

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Mom Knows Best: The Universality of Maternal Microbial Transmission

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Cloacal Bacterial Diversity Increases with Multiple Mates: Evidence of Sexual Transmission in Female Common Lizards

inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

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Humpback Whale Populations Share a Core Skin Bacterial Community: Towards a Health Index for Marine Mammals?

inferredcites →https://doi.org/10.1371/journal.pone.0094249openalex-snapshot

Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys

inferredcites →https://doi.org/10.1371/journal.pone.0232698openalex-snapshot

Identification and characterization of a novel extracellular polyhydroxyalkanoate depolymerase in the complete genome sequence of Undibacterium sp. KW1 and YM2 strains

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Beneficial effects of Bacteroides fragilis polysaccharides on the immune system

inferredcites →https://doi.org/10.3354/meps11034openalex-snapshot

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

inferredcites →https://doi.org/10.3389/fmicb.2012.00292openalex-snapshot

The Second Skin: Ecological Role of Epibiotic Biofilms on Marine Organisms

inferredcites →https://doi.org/10.3389/fmicb.2017.01050openalex-snapshot

Survey of Antibiotic-producing Bacteria Associated with the Epidermal Mucus Layers of Rays and Skates

inferredcites →https://doi.org/10.3389/fmicb.2021.605285openalex-snapshot

Microbiome Analyses Demonstrate Specific Communities Within Five Shark Species

inferredcites →https://doi.org/10.7554/elife.52760openalex-snapshot

The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications

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