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Induced systemic resistance impacts the phyllosphere microbiome through plant-microbe-microbe interactions

https://doi.org/10.1101/2021.01.13.426583

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Mode of Action of Bacillus thuringiensis Toxins

inferredcites →https://doi.org/10.1007/978-981-10-6068-7openalex-snapshot

Salicylic Acid: A Multifaceted Hormone

inferredcites →https://doi.org/10.1007/bf00011907openalex-snapshot

Bacterial antagonists of Sunflower (Helianthus annuus L.) fungal pathogens

inferredcites →https://doi.org/10.1007/bf03175344openalex-snapshot

Bacillus thuringiensis beyond insect biocontrol: plant growth promotion and biosafety of polyvalent strains

inferredcites →https://doi.org/10.1007/s002480000087openalex-snapshot

The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L.

inferredcites →https://doi.org/10.1007/s00253-009-2092-7openalex-snapshot

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture

inferredcites →https://doi.org/10.1007/s00299-013-1515-1openalex-snapshot

Transcriptional profile of tomato roots exhibiting Bacillus thuringiensis-induced resistance to Ralstonia solanacearum

inferredcites →https://doi.org/10.1016/j.cell.2018.02.049openalex-snapshot

Flavin Monooxygenase-Generated N-Hydroxypipecolic Acid Is a Critical Element of Plant Systemic Immunity

inferredcites →https://doi.org/10.1016/j.cell.2018.03.044openalex-snapshot

Opposite Roles of Salicylic Acid Receptors NPR1 and NPR3/NPR4 in Transcriptional Regulation of Plant Immunity

inferredcites →https://doi.org/10.1016/j.mib.2019.08.003openalex-snapshot

Beyond pathogens: microbiota interactions with the plant immune system

inferredcites →https://doi.org/10.1016/j.molp.2019.10.016openalex-snapshot

Redundant CAMTA Transcription Factors Negatively Regulate the Biosynthesis of Salicylic Acid and N-Hydroxypipecolic Acid by Modulating the Expression of SARD1 and CBP60g

inferredcites →https://doi.org/10.1016/j.molp.2019.11.001openalex-snapshot

Arabidopsis CAMTA Transcription Factors Regulate Pipecolic Acid Biosynthesis and Priming of Immunity Genes

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Mode of action of Bacillus thuringiensis Cry and Cyt toxins and their potential for insect control

inferredcites →https://doi.org/10.1016/j.tplants.2016.07.009openalex-snapshot

Recognizing Plant Defense Priming

inferredcites →https://doi.org/10.1016/s0092-8674(00)81858-9openalex-snapshot

The Arabidopsis NPR1 Gene That Controls Systemic Acquired Resistance Encodes a Novel Protein Containing Ankyrin Repeats

inferredcites →https://doi.org/10.1038/163688a0openalex-snapshot

Measurement of Diversity

inferredcites →https://doi.org/10.1038/35107108openalex-snapshot

Isochorismate synthase is required to synthesize salicylic acid for plant defence

inferredcites →https://doi.org/10.1038/nature11162openalex-snapshot

NPR3 and NPR4 are receptors for the immune signal salicylic acid in plants

inferredcites →https://doi.org/10.1038/nature11237openalex-snapshot

Defining the core Arabidopsis thaliana root microbiome

inferredcites →https://doi.org/10.1038/nature11336openalex-snapshot

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

inferredcites →https://doi.org/10.1038/nature16192openalex-snapshot

Functional overlap of the Arabidopsis leaf and root microbiota

inferredcites →https://doi.org/10.1038/ncomms8658openalex-snapshot

Arabidopsis AZI1 family proteins mediate signal mobilization for systemic defence priming

inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot

DADA2: High-resolution sample inference from Illumina amplicon data

inferredcites →https://doi.org/10.1038/nrmicro2910openalex-snapshot

Microbial life in the phyllosphere

inferredcites →https://doi.org/10.1038/s41396-018-0093-1openalex-snapshot

Disease-induced assemblage of a plant-beneficial bacterial consortium

inferredcites →https://doi.org/10.1038/s41467-019-11798-2openalex-snapshot

Systemic acquired resistance networks amplify airborne defense cues

inferredcites →https://doi.org/10.1038/s41467-019-13318-8openalex-snapshot

Glycerol-3-phosphate mediates rhizobia-induced systemic signaling in soybean

inferredcites →https://doi.org/10.1038/s41559-019-0994-zopenalex-snapshot

Synthetic microbiota reveal priority effects and keystone strains in the Arabidopsis phyllosphere

inferredcites →https://doi.org/10.1038/s41586-020-2185-0openalex-snapshot

A plant genetic network for preventing dysbiosis in the phyllosphere

inferredcites →https://doi.org/10.1046/j.1466-822x.2003.00015.xopenalex-snapshot

A tribute to Claude Shannon (1916–2001) and a plea for more rigorous use of species richness, species diversity and the ‘Shannon–Wiener’ Index

inferredcites →https://doi.org/10.1073/pnas.0504423102openalex-snapshot

The endophytic fungus Piriformospora indica reprograms barley to salt-stress tolerance, disease resistance, and higher yield

inferredcites →https://doi.org/10.1073/pnas.1805291115openalex-snapshot

N -hydroxy-pipecolic acid is a mobile metabolite that induces systemic disease resistance in Arabidopsis

inferredcites →https://doi.org/10.1073/pnas.92.1.151openalex-snapshot

Comparative genomic analysis of tumors: detection of DNA losses and amplification.

inferredcites →https://doi.org/10.1080/14620316.2004.11511852openalex-snapshot

The use ofPantoea agglomeransandFlavobacterium sp. to control banana pathogens

inferredcites →https://doi.org/10.1086/338994openalex-snapshot

General Relationships between Species Diversity and Stability in Competitive Systems

inferredcites →https://doi.org/10.1093/jxb/eraa417openalex-snapshot

Shaping the leaf microbiota: plant–microbe–microbe interactions

inferredcites →https://doi.org/10.1093/nar/gkt1209openalex-snapshot

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

inferredcites →https://doi.org/10.1094/mpmi-07-18-0185-ropenalex-snapshot

Underground Azelaic Acid–Conferred Resistance to Pseudomonas syringae in Arabidopsis

inferredcites →https://doi.org/10.1094/mpmi-09-10-0213openalex-snapshot

The Plant Growth–Promoting Rhizobacterium Bacillus cereus AR156 Induces Systemic Resistance in Arabidopsis thaliana by Simultaneously Activating Salicylate- and Jasmonate/Ethylene-Dependent Signaling Pathways

inferredcites →https://doi.org/10.1094/mpmi-10-14-0334-fiopenalex-snapshot

The Plant Microbiome at Work

inferredcites →https://doi.org/10.1094/mpmi.2002.15.1.27openalex-snapshot

Differential Effectiveness of Salicylate-Dependent and Jasmonate/Ethylene-Dependent Induced Resistance in Arabidopsis

inferredcites →https://doi.org/10.1099/ijs.0.055574-0openalex-snapshot

Solimonas terrae sp. nov., isolated from soil

inferredcites →https://doi.org/10.1104/pp.107.113829openalex-snapshot

MYB72 Is Required in Early Signaling Steps of Rhizobacteria-Induced Systemic Resistance in Arabidopsis

inferredcites →https://doi.org/10.1104/pp.108.127613openalex-snapshot

Root-Secreted Malic Acid Recruits Beneficial Soil Bacteria

inferredcites →https://doi.org/10.1104/pp.111.2.525openalex-snapshot

Two Methyl Jasmonate-Insensitive Mutants Show Altered Expression of AtVsp in Response to Methyl Jasmonate and Wounding

inferredcites →https://doi.org/10.1104/pp.112.2.525openalex-snapshot

Tissue-Specific Activity of Two Manganese Superoxide Dismutase Promoters in Transgenic Tobacco

inferredcites →https://doi.org/10.1104/pp.112.207324openalex-snapshot

Metabolic and Transcriptomic Changes Induced in Arabidopsis by the Rhizobacterium Pseudomonas fluorescens SS101

inferredcites →https://doi.org/10.1104/pp.114.239665openalex-snapshot

Contrasting Roles of the Apoplastic Aspartyl Protease APOPLASTIC, ENHANCED DISEASE SUSCEPTIBILITY1-DEPENDENT1 and LEGUME LECTIN-LIKE PROTEIN1 in Arabidopsis Systemic Acquired Resistance ,

inferredcites →https://doi.org/10.1104/pp.17.00222openalex-snapshot

Biochemical Principles and Functional Aspects of Pipecolic Acid Biosynthesis in Plant Immunity

inferredcites →https://doi.org/10.1105/tpc.10.9.1571openalex-snapshot

A Novel Signaling Pathway Controlling Induced Systemic Resistance in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.112.103564openalex-snapshot

Pipecolic Acid, an Endogenous Mediator of Defense Amplification and Priming, Is a Critical Regulator of Inducible Plant Immunity

inferredcites →https://doi.org/10.1105/tpc.16.00486openalex-snapshot

Characterization of a Pipecolic Acid Biosynthesis Pathway Required for Systemic Acquired Resistance

inferredcites →https://doi.org/10.1105/tpc.16.00898openalex-snapshot

Monoterpenes Support Systemic Acquired Resistance within and between Plants

inferredcites →https://doi.org/10.1105/tpc.20.00499openalex-snapshot

Diverse Roles of the Salicylic Acid Receptors NPR1 and NPR3/NPR4 in Plant Immunity

inferredcites →https://doi.org/10.1105/tpc.8.8.1225openalex-snapshot

Systemic resistance in Arabidopsis induced by biocontrol bacteria is independent of salicylic acid accumulation and pathogenesis-related gene expression.

inferredcites →https://doi.org/10.1111/2041-210x.12760openalex-snapshot

Intertwining phylogenetic trees and networks

inferredcites →https://doi.org/10.1111/j.1364-3703.2004.00242.xopenalex-snapshot

The jasmonate‐insensitive mutant jin1 shows increased resistance to biotrophic as well as necrotrophic pathogens

inferredcites →https://doi.org/10.1111/j.1365-2672.2012.05330.xopenalex-snapshot

The volatile-producing Flavobacterium johnsoniae strain GSE09 shows biocontrol activity against Phytophthora capsici in pepper

inferredcites →https://doi.org/10.1111/j.1365-313x.2004.02200.xopenalex-snapshot

A key role for ALD1 in activation of local and systemic defenses in Arabidopsis

inferredcites →https://doi.org/10.1111/j.1462-2920.2006.01155.xopenalex-snapshot

Isolation and characterization of hydrogen‐oxidizing bacteria induced following exposure of soil to hydrogen gas and their impact on plant growth

inferredcites →https://doi.org/10.1111/j.1469-8137.2008.02578.xopenalex-snapshot

Transcription factor MYC2 is involved in priming for enhanced defense during rhizobacteria‐induced systemic resistance in Arabidopsis thaliana

inferredcites →https://doi.org/10.1111/nph.14036openalex-snapshot

The Arabidopsis leaf transcriptome reveals distinct but also overlapping responses to colonization by phyllosphere commensals and pathogen infection with impact on plant health

inferredcites →https://doi.org/10.1111/nph.16953openalex-snapshot

Systemic propagation of immunity in plants

inferredcites →https://doi.org/10.1111/pce.13632openalex-snapshot

Beneficial microbes going underground of root immunity

inferredcites →https://doi.org/10.1126/sciadv.aar4509openalex-snapshot

Pipecolic acid confers systemic immunity by regulating free radicals

inferredcites →https://doi.org/10.1126/sciadv.aaz0478openalex-snapshot

The plant cuticle regulates apoplastic transport of salicylic acid during systemic acquired resistance

inferredcites →https://doi.org/10.1126/science.1147113openalex-snapshot

Methyl Salicylate Is a Critical Mobile Signal for Plant Systemic Acquired Resistance

inferredcites →https://doi.org/10.1126/science.aaw1720openalex-snapshot

Isochorismate-derived biosynthesis of the plant stress hormone salicylic acid

inferredcites →https://doi.org/10.1128/aem.02928-05openalex-snapshot

Peptidoglycan from Bacillus cereus Mediates Commensalism with Rhizosphere Bacteria from the Cytophaga-Flavobacterium Group

inferredcites →https://doi.org/10.1128/aem.71.12.8228-8235.2005openalex-snapshot

UniFrac: a New Phylogenetic Method for Comparing Microbial Communities

inferredcites →https://doi.org/10.1146/annurev-arplant-042916-041132openalex-snapshot

Defense Priming: An Adaptive Part of Induced Resistance

inferredcites →https://doi.org/10.1146/annurev-cellbio-092910-154055openalex-snapshot

Hormonal Modulation of Plant Immunity

inferredcites →https://doi.org/10.1146/annurev-phyto-080614-120132openalex-snapshot

Priming for Enhanced Defense

inferredcites →https://doi.org/10.1146/annurev-phyto-082712-102340openalex-snapshot

Induced Systemic Resistance by Beneficial Microbes

inferredcites →https://doi.org/10.1146/annurev.phyto.050908.135202openalex-snapshot

Salicylic Acid, a Multifaceted Hormone to Combat Disease

inferredcites →https://doi.org/10.1146/annurev.phyto.42.040803.140421openalex-snapshot

SYSTEMIC ACQUIRED RESISTANCE

inferredcites →https://doi.org/10.1146/annurev.phyto.44.070505.143425openalex-snapshot

Significance of Inducible Defense-related Proteins in Infected Plants

inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

inferredcites →https://doi.org/10.1264/jsme2.me12162openalex-snapshot

Bacillus thuringiensis Suppresses Bacterial wilt Disease Caused by Ralstonia solanacearum with Systemic Induction of Defense-Related Gene Expression in Tomato

inferredcites →https://doi.org/10.1371/journal.pcbi.1003531openalex-snapshot

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

inferredcites →https://doi.org/10.1371/journal.pone.0056329openalex-snapshot

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

inferredcites →https://doi.org/10.1371/journal.pone.0076704openalex-snapshot

Comparative Genomic Analysis Indicates that Niche Adaptation of Terrestrial Flavobacteria Is Strongly Linked to Plant Glycan Metabolism

inferredcites →https://doi.org/10.23880/oajmb-16000126openalex-snapshot

Induced Systemic Resistance

inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot

vegan: Community Ecology Package

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.32614/rj-2016-025openalex-snapshot

Using DECIPHER v2.0 to Analyze Big Biological Sequence Data in R

inferredcites →https://doi.org/10.3389/fmicb.2018.00847openalex-snapshot

Stomatal Closure and SA-, JA/ET-Signaling Pathways Are Essential for Bacillus amyloliquefaciens FZB42 to Restrict Leaf Disease Caused by Phytophthora nicotianae in Nicotiana benthamiana

inferredcites →https://doi.org/10.3389/fpls.2013.00206openalex-snapshot

Deciphering the hormonal signalling network behind the systemic resistance induced by Trichoderma harzianum in tomato

inferredcites →https://doi.org/10.3389/fpls.2017.00238openalex-snapshot

Induced Systemic Resistance against Botrytis cinerea by Bacillus cereus AR156 through a JA/ET- and NPR1-Dependent Signaling Pathway and Activates PAMP-Triggered Immunity in Arabidopsis

inferredcites →https://doi.org/10.3390/vaccines8030503openalex-snapshot

Bacillus subtilis and Pseudomonas fluorescens Trigger Common and Distinct Systemic Immune Responses in Arabidopsis thaliana Depending on the Pathogen Lifestyle

inferredcites →https://doi.org/10.35848/1882-0786/ab9712openalex-snapshot

Cold plasma treatment ofArabidopsis thaliana(L.) seeds modulates plant-associated microbiome composition

inferredcites →https://doi.org/10.5650/jos.62.415openalex-snapshot

Involvement of the Salicylic Acid Signaling Pathway in the Systemic Resistance Induced in Arabidopsis by Plant Growth-Promoting Fungus Fusarium equiseti GF19-1

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ps.7560openalex-snapshot

Bacillus thuringiensis as a biofertilizer in crops and their implications in the control of phytopathogens and insect pests

inferred← citeshttps://doi.org/10.1007/978-3-031-24181-9_7openalex-snapshot

Induced Systematic Resistance and Plant Immunity

inferred← citeshttps://doi.org/10.1007/s11274-026-04788-2openalex-snapshot

Phyllosphere microbiome: Exploring the unexplored frontiers for precision agricultural and environmental sustainability

inferred← citeshttps://doi.org/10.1016/j.rhisph.2026.101310openalex-snapshot

Inoculation of Pseudomonas koreensis enhances crop health by modulating metabolomes related to growth and resistance of lettuce grown in a hydroponic system

inferred← citeshttps://doi.org/10.1111/pce.14399openalex-snapshot

Impaired microbial N‐acyl homoserine lactone signalling increases plant resistance to aphids across variable abiotic and biotic environments

inferred← citeshttps://doi.org/10.22541/au.165782025.53201742/v1openalex-snapshot

Microbial N-acyl homoserine lactone signalling increases plant resistance to aphids across variable abiotic and biotic environments

inferred← citeshttps://doi.org/10.3389/fmicb.2022.939911openalex-snapshot

Organic Fertilizer Application Mediates Tomato Defense Against Pseudomonas syringae pv. Tomato, Possibly by Reshaping the Soil Microbiome

inferred← citeshttps://doi.org/10.3389/fmicb.2026.1799394openalex-snapshot

Pseudomonas simiae-induced resistance in barley is subject to pathogen-dependent gene expression regulation and not associated with major changes in the phyllosphere microbiome

inferred← citeshttps://doi.org/10.64898/2026.01.21.700805openalex-snapshot

The induction of systemic resistance to barley powdery mildew by rhizosphere bacterial communities does not disrupt the structure or function of native microbial communities

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